Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024454.1

Orthogroup ID

OG0005349

Physical Location & Seq

Genomic Coordinates Forward (+)

2334 .. 3765

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024454.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggattcgctcgcacgattcgtctgcttctatctgctcacagtttcctccttcttcttctcacaggctagggcccaaggtactgcttccgtcttctttatcgatagctccactcatcaatttcttcgcagcaacgatgtcgtcaagcctgactcaatgtcgctgccggaagtcagtgctgccgtgtctgtcttgcttggatttgcgccgcctgcttcactctcagctgctggttcatctaagttaaatgaggttcttgagcccaatccatttaatagacctcgtgctgttttcgtgctggaagtcagaggaattgctgatcctactcttgttctcaaacaaaattccatgtttaaaagtgcttatgaaaccgagattgaccttggcttgaagaaagctgagattgagcttcctgatgaaagtgaagtatctgtgttttctttggatgagcaatcggcagactataatgacaatgaaatcagcaattttgcctcttggatgggcggatcatatgatcctgatacattggaagcgttaaacggagagttggccatccccttggccaatggtgatcagttgaagcttcatatgtccaaggtacttttagcagtcagtatcatatggtctagtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04614 map04614

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

22.94

Weight (kDa)

4.43

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24160
fragaria_vesca	FvH4_4g00480 FvH4_4g00480 FvH4_4g00480 FvH4_4g00480
malus_domestica	MD04G1005200.v1.1 MD04G1005300.v1.1 MD07G1287300.v1.1
prunus_persica	Prupe.1G005000_v2.0.a1 Prupe.1G005000_v2.0.a1 Prupe.1G005000_v2.0.a1 Prupe.1G005000_v2.0.a1 Prupe.1G005000_v2.0.a1
pyrus_communis	pycom04g00500
rosa_chinensis	RchiOBHm_Chr4g0385791 RchiOBHm_Chr4g0385911
rosa_laevigata	RLG00000010202
rosa_multiflora	Rmu_co8333427.1_g000001 Rmu_sc0007400.1_g000009 Rmu_sc0008728.1_g000001 Rmu_sc0024454.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333510
rosa_rugosa	Rorug03G0302700 Rorug03G0302800
rosa_samantha	Rh4AG007400 Rh4BG005200 Rh4CG008000 Rh4DG006900
rosa_wichuraiana	Rw4G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	209, 504
AclWI	GGATC	3 cut(s)	314, 509, 514
AcoI	YGGCCR	2 cut(s)	549, 561
AcsI	RAATTY	1 cut(s)	343
AfaI	GTAC	2 cut(s)	82, 600
AgsI	TTSAA	2 cut(s)	391, 580
AhdI	GACNNNNNGTC	1 cut(s)	157
AluBI	AGCT	5 cut(s)	108, 227, 398, 409, 583
AluI	AGCT	5 cut(s)	108, 227, 398, 409, 583
AlwI	GGATC	3 cut(s)	314, 509, 514
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	72, 549, 561
ApaI	GGGCCC	1 cut(s)	76
ApeKI	GCWGC	4 cut(s)	129, 163, 179, 227
ApoI	RAATTY	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	72, 73
AsuHPI	GGTGA	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	76
BalI	TGGCCA	2 cut(s)	551, 563
BanII	GRGCYC	2 cut(s)	76, 264
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	85
BbvI	GCAGC	4 cut(s)	141, 150, 166, 214
BccI	CCATC	2 cut(s)	493, 560
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 121, 155
BclI	TGATCA	1 cut(s)	571
BfaI	CTAG	2 cut(s)	69, 627
BisI	GCNGC	5 cut(s)	130, 164, 180, 209, 228
BlsI	GCNGC	5 cut(s)	131, 165, 181, 210, 229
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmgT120I	GGNCC	2 cut(s)	72, 73
BmiI	GGNNCC	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	76, 382, 558, 594
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	4 cut(s)	76, 382, 558, 594
BseGI	GGATG	3 cut(s)	451, 504, 552
BseMII	CTCAG	2 cut(s)	237, 390
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	4 cut(s)	141, 150, 166, 214
BshFI	GGCC	3 cut(s)	74, 551, 563
BshVI	ATCGAT	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	167
BsnI	GGCC	3 cut(s)	74, 551, 563
Bsp120I	GGGCCC	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	76, 264
Bsp143I	GATC	4 cut(s)	319, 506, 514, 571
BspACI	CCGC	2 cut(s)	209, 504
BspANI	GGCC	3 cut(s)	74, 551, 563
BspCNI	CTCAG	2 cut(s)	236, 391
BspDI	ATCGAT	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	3 cut(s)	314, 509, 514
BssECI	CCNNGG	4 cut(s)	76, 382, 558, 594
BssMI	GATC	4 cut(s)	319, 506, 514, 571
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	4 cut(s)	76, 382, 558, 594
Bst2BI	CACGAG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	12, 213
BstDEI	CTNAG	3 cut(s)	223, 240, 399
BstF5I	GGATG	3 cut(s)	451, 504, 552
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	4 cut(s)	322, 509, 517, 574
BstMBI	GATC	4 cut(s)	319, 506, 514, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	4 cut(s)	141, 150, 166, 214
BstV2I	GAAGAC	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	559
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	74, 551, 563
BsuTUI	ATCGAT	1 cut(s)	102
BtsCI	GGATG	3 cut(s)	451, 504, 552
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	12, 213
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	72, 73
ClaI	ATCGAT	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	81, 599
CviAII	CATG	1 cut(s)	349
CviQI	GTAC	2 cut(s)	81, 599
DdeI	CTNAG	3 cut(s)	223, 240, 399
DpnI	GATC	4 cut(s)	321, 508, 516, 573
DpnII	GATC	4 cut(s)	319, 506, 514, 571
DraI	TTTAAA	1 cut(s)	355
DriI	GACNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	2 cut(s)	549, 561
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	519
Eco130I	CCWWGG	4 cut(s)	76, 382, 558, 594
Eco24I	GRGCYC	2 cut(s)	76, 264
EcoO109I	RGGNCCY	1 cut(s)	72
EcoT14I	CCWWGG	4 cut(s)	76, 382, 558, 594
EcoT38I	GRGCYC	2 cut(s)	76, 264
ErhI	CCWWGG	4 cut(s)	76, 382, 558, 594
FaeI	CATG	1 cut(s)	352
FaiI	YATR	9 cut(s)	350, 366, 465, 511, 513, 588, 590, 620, 622
FatI	CATG	1 cut(s)	348
FauNDI	CATATG	3 cut(s)	511, 588, 620
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	5 cut(s)	130, 164, 180, 209, 228
FokI	GGATG	3 cut(s)	458, 511, 539
FriOI	GRGCYC	2 cut(s)	76, 264
Fsp4HI	GCNGC	5 cut(s)	130, 164, 180, 209, 228
FspBI	CTAG	2 cut(s)	69, 627
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	5 cut(s)	130, 164, 180, 209, 228
HaeIII	GGCC	3 cut(s)	74, 551, 563
HapII	CCGG	1 cut(s)	167
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	3 cut(s)	5, 18, 152
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	581
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	3 cut(s)	257, 413, 518
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	223, 240, 399
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	4 cut(s)	319, 506, 514, 571
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	8 cut(s)	50, 162, 180, 216, 225, 284, 426, 531
Lsp1109I	GCAGC	4 cut(s)	141, 150, 166, 214
MaeI	CTAG	2 cut(s)	69, 627
MalI	GATC	4 cut(s)	321, 508, 516, 573
MboI	GATC	4 cut(s)	319, 506, 514, 571
MboII	GAAGA	5 cut(s)	46, 49, 85, 116, 403
MhlI	GDGCHC	2 cut(s)	76, 264
MlsI	TGGCCA	2 cut(s)	551, 563
MluCI	AATT	4 cut(s)	119, 312, 343, 484
MluNI	TGGCCA	2 cut(s)	551, 563
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	58, 244, 291, 302, 502
Mox20I	TGGCCA	2 cut(s)	551, 563
MscI	TGGCCA	2 cut(s)	551, 563
MseI	TTAA	4 cut(s)	245, 273, 354, 536
Msp20I	TGGCCA	2 cut(s)	551, 563
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeI	CATATG	3 cut(s)	511, 588, 620
NdeII	GATC	4 cut(s)	319, 506, 514, 571
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	5, 18
PkrI	GCNGC	5 cut(s)	131, 165, 181, 210, 229
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	74
PspOMI	GGGCCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	72, 73
PstNI	CAGNNNCTG	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	82, 600
RsaNI	GTAC	2 cut(s)	81, 599
SaqAI	TTAA	4 cut(s)	245, 273, 354, 536
SatI	GCNGC	5 cut(s)	130, 164, 180, 209, 228
Sau3AI	GATC	4 cut(s)	319, 506, 514, 571
Sau96I	GGNCC	2 cut(s)	72, 73
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	76, 264
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	4 cut(s)	119, 312, 343, 484
SsiI	CCGC	2 cut(s)	209, 504
SspMI	CTAG	2 cut(s)	69, 627
StyI	CCWWGG	4 cut(s)	76, 382, 558, 594
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	119, 312, 343, 484
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	2 cut(s)	5, 18
Tru1I	TTAA	4 cut(s)	245, 273, 354, 536
Tru9I	TTAA	4 cut(s)	245, 273, 354, 536
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	4 cut(s)	129, 163, 179, 227
TspDTI	ATGAA	5 cut(s)	225, 381, 432, 489, 575
TspGWI	ACGGA	2 cut(s)	79, 555
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	343
XspI	CTAG	2 cut(s)	69, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.