Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005349

Physical Location & Seq

Genomic Coordinates Reverse (-)

446728 .. 451273

Gene Structure 4546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G005000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGATTTGCTTGCACGCAGTATCTGCTTCTACCTACTTACCATTTCTTCGTTTCTCTTCTCGCAAGCTAGGGCCGAAGGTACTGCTTCCGTCTTCTTCATCGATAGCTCCACCCATCGATTTCTTCGCAGCCCGTCCTCAAACGATGTCGTCAAGCCTGACTCAATGTTGCTCCCAGAAGTCAGTGCAGCAGTGTCGGTCTTGCTTGGATTTGCACCACCTGTCACGCTCTCAGCTGCTGGTTCAGCTAAGTTGAATGAGGTTCTCATGCCTAATCCATTCAATAGACCTCGTGCTGTTTTTGTGCTGGAAGTCAGAGGAATTGATGATCCTAGTCTTATAGTCAAAGATAACGCCATGTTCAGCAGCGCCTATAGTGCCAATATTGATTTTGGCTCAAACAAAGCTGACATTGAGCTTCCAGATCAAGGTGAAGTCTCTGTGTTTTCTTTGGATGAACAATTGGCAGATTATACTGTTAAAGAGATTGGCGATTTTGCATCTTGGATGGGTGGTTCATATGTTGTTGATACATTGGAACCACTAAATGGAGAATTGAGCATCCCTTTGGCCAATGGTGACAACTTGAAGCTTCATATGTCAAAGGAGGCAGACAGGATATTCACAACTAGCCTTTTGTCTCTCATCCGCAACTTTAGAAGTGCAATGGAGATGCATCAAGATTTGTCTCACAGTATCCACAGCCCAGCCGAGTTATTAACAGGCTGTTTTGATCGAATCAAGGTTCTGCAAGAGCAGTATGGAACTGAAGGTGCTGCTCATGGAGTGGAGCTGCTACTTGCTACACTGTCCAAGATATTTGACTCACTCGATGATGCATACAAAGGTCAAATTGTTGGAGCTATCCTTTTCAATGGAGTTGCACCTGTGGAGTCAGGGAAGATGTTGAATGTGATGTTTACTTGTCAGCCATCTCCTCGTTGGTTGGCTGAAAAAGAAGTCCCGAAAGATACAAAGATTGTGCAAGTGCTTTTGGTTAGACGTACGCTTGCTTGGATCACTGGAATCATTCTCATCATTTCAACTCTATTGGGGGTATGCTTCCTTCTGAATATGCCAGTCACCAGGGATACCCTACTGTACTCTAATGTCAAGCTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04614 map04614

Pfam Domains

Protein Families

No domains found.

Protein Analysis

375

Amino Acids

40.94

Weight (kDa)

4.95

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24160
fragaria_vesca	FvH4_4g00480 FvH4_4g00480 FvH4_4g00480 FvH4_4g00480
malus_domestica	MD04G1005200.v1.1 MD04G1005300.v1.1 MD07G1287300.v1.1
prunus_persica	Prupe.1G005000_v2.0.a1 Prupe.1G005000_v2.0.a1 Prupe.1G005000_v2.0.a1 Prupe.1G005000_v2.0.a1 Prupe.1G005000_v2.0.a1
pyrus_communis	pycom04g00500
rosa_chinensis	RchiOBHm_Chr4g0385791 RchiOBHm_Chr4g0385911
rosa_laevigata	RLG00000010202
rosa_multiflora	Rmu_co8333427.1_g000001 Rmu_sc0007400.1_g000009 Rmu_sc0008728.1_g000001 Rmu_sc0024454.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333510
rosa_rugosa	Rorug03G0302700 Rorug03G0302800
rosa_samantha	Rh4AG007400 Rh4BG005200 Rh4CG008000 Rh4DG006900
rosa_wichuraiana	Rw4G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	548
AciI	CCGC	1 cut(s)	649
AclWI	GGATC	2 cut(s)	323, 1025
AcoI	YGGCCR	1 cut(s)	570
AcuI	CTGAAG	1 cut(s)	789
AfaI	GTAC	3 cut(s)	82, 1006, 1103
AfiI	CCNNNNNNNGG	2 cut(s)	428, 548
AgsI	TTSAA	6 cut(s)	256, 283, 589, 874, 910, 1044
AjnI	CCWGG	1 cut(s)	1085
AloI	GAACNNNNNNTCC	2 cut(s)	499, 531
Alw26I	GTCTC	3 cut(s)	442, 645, 693
AlwI	GGATC	2 cut(s)	323, 1025
AlwNI	CAGNNNCTG	2 cut(s)	24, 239
AoxI	GGCC	2 cut(s)	72, 570
ApeKI	GCWGC	6 cut(s)	129, 188, 236, 366, 776, 793
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	443, 590, 1075
BalI	TGGCCA	1 cut(s)	572
BarI	GAAGNNNNNNTAC	2 cut(s)	1050, 1082
BauI	CACGAG	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	85
BbvI	GCAGC	6 cut(s)	141, 200, 223, 378, 763, 780
BccI	CCATC	3 cut(s)	123, 502, 940
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 177, 211
BciT130I	CCWGG	1 cut(s)	1087
BciVI	GTATCC	2 cut(s)	707, 1084
BcoDI	GTCTC	3 cut(s)	442, 645, 693
BfaI	CTAG	3 cut(s)	69, 333, 630
BfmI	CTRYAG	1 cut(s)	373
BfoI	RGCGCY	1 cut(s)	372
BfuI	GTATCC	2 cut(s)	707, 1084
BisI	GCNGC	6 cut(s)	130, 189, 237, 367, 777, 794
BlsI	GCNGC	6 cut(s)	131, 190, 238, 368, 778, 795
Bme1390I	CCNGG	1 cut(s)	1087
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	1 cut(s)	1087
BmsI	GCATC	5 cut(s)	509, 570, 663, 685, 826
BpiI	GAAGAC	1 cut(s)	85
Bsa29I	ATCGAT	2 cut(s)	102, 118
BsaJI	CCNNGG	1 cut(s)	1086
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 548
Bse1I	ACTGG	2 cut(s)	1027, 1079
Bse3DI	GCAATG	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	1087
BseCI	ATCGAT	2 cut(s)	102, 118
BseDI	CCNNGG	1 cut(s)	1086
BseGI	GGATG	4 cut(s)	460, 513, 561, 645
BseLI	CCNNNNNNNGG	2 cut(s)	428, 548
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	1027, 1079
BseRI	GAGGAG	1 cut(s)	927
BseXI	GCAGC	6 cut(s)	141, 200, 223, 378, 763, 780
BseYI	CCCAGC	1 cut(s)	706
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	74, 572
BshVI	ATCGAT	2 cut(s)	102, 118
BsiWI	CGTACG	1 cut(s)	1004
BslFI	GGGAC	1 cut(s)	947
BslI	CCNNNNNNNGG	2 cut(s)	428, 548
BsmAI	GTCTC	3 cut(s)	442, 645, 693
BsmFI	GGGAC	1 cut(s)	947
BsnI	GGCC	2 cut(s)	74, 572
Bsp143I	GATC	4 cut(s)	328, 424, 733, 1017
BspACI	CCGC	1 cut(s)	649
BspANI	GGCC	2 cut(s)	74, 572
BspCNI	CTCAG	1 cut(s)	245
BspDI	ATCGAT	2 cut(s)	102, 118
BspLI	GGNNCC	1 cut(s)	540
BspPI	GGATC	2 cut(s)	323, 1025
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	2 cut(s)	1027, 1079
BssECI	CCNNGG	1 cut(s)	1086
BssMI	GATC	4 cut(s)	328, 424, 733, 1017
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	1087
Bst4CI	ACNGT	4 cut(s)	478, 695, 810, 1101
Bst6I	CTCTTC	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstC8I	GCNNGC	4 cut(s)	12, 16, 66, 1011
BstDEI	CTNAG	2 cut(s)	232, 249
BstF5I	GGATG	4 cut(s)	460, 513, 561, 645
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	4 cut(s)	331, 427, 736, 1020
BstMAI	GTCTC	3 cut(s)	442, 645, 693
BstMBI	GATC	4 cut(s)	328, 424, 733, 1017
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 245, 377
BstNI	CCWGG	1 cut(s)	1087
BstSCI	CCNGG	1 cut(s)	1085
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	6 cut(s)	141, 200, 223, 378, 763, 780
BstV2I	GAAGAC	1 cut(s)	85
Bsu15I	ATCGAT	2 cut(s)	102, 118
BsuI	GTATCC	2 cut(s)	707, 1084
BsuRI	GGCC	2 cut(s)	74, 572
BsuTUI	ATCGAT	2 cut(s)	102, 118
BtsCI	GGATG	4 cut(s)	460, 513, 561, 645
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	4 cut(s)	190, 198, 806, 1020
Cac8I	GCNNGC	4 cut(s)	12, 16, 66, 1011
CaiI	CAGNNNCTG	2 cut(s)	24, 239
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	72
ClaI	ATCGAT	2 cut(s)	102, 118
Csp6I	GTAC	3 cut(s)	81, 1005, 1102
CviAII	CATG	3 cut(s)	268, 358, 782
CviQI	GTAC	3 cut(s)	81, 1005, 1102
DdeI	CTNAG	2 cut(s)	232, 249
DpnI	GATC	4 cut(s)	330, 426, 735, 1019
DpnII	GATC	4 cut(s)	328, 424, 733, 1017
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	789
EcoRII	CCWGG	1 cut(s)	1085
EcoT22I	ATGCAT	2 cut(s)	678, 841
FaeI	CATG	3 cut(s)	271, 361, 785
FaqI	GGGAC	1 cut(s)	947
FatI	CATG	3 cut(s)	267, 357, 781
FauNDI	CATATG	2 cut(s)	520, 597
Fnu4HI	GCNGC	6 cut(s)	130, 189, 237, 367, 777, 794
FokI	GGATG	4 cut(s)	467, 520, 548, 632
Fsp4HI	GCNGC	6 cut(s)	130, 189, 237, 367, 777, 794
FspBI	CTAG	3 cut(s)	69, 333, 630
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	6 cut(s)	130, 189, 237, 367, 777, 794
GsaI	CCCAGC	1 cut(s)	710
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	74, 572
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	3 cut(s)	271, 361, 785
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	5 cut(s)	161, 738, 824, 893, 1026
HphI	GGTGA	3 cut(s)	443, 590, 1075
Hpy166II	GTNNAC	1 cut(s)	921
Hpy188I	TCNGA	2 cut(s)	317, 1071
Hpy188III	TCNNGA	3 cut(s)	422, 680, 964
Hpy8I	GTNNAC	1 cut(s)	921
HpyAV	CCTTC	3 cut(s)	71, 764, 1076
HpyCH4III	ACNGT	4 cut(s)	478, 695, 810, 1101
HpyCH4IV	ACGT	1 cut(s)	1003
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 245, 377
HpyF3I	CTNAG	2 cut(s)	232, 249
HpySE526I	ACGT	1 cut(s)	1003
Hsp92II	CATG	3 cut(s)	271, 361, 785
HspAI	GCGC	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	328, 424, 733, 1017
LmnI	GCTCC	4 cut(s)	113, 177, 790, 860
Lsp1109I	GCAGC	6 cut(s)	141, 200, 223, 378, 763, 780
LweI	GCATC	5 cut(s)	509, 570, 663, 685, 826
MaeI	CTAG	3 cut(s)	69, 333, 630
MaeII	ACGT	1 cut(s)	1003
MaeIII	GTNAC	3 cut(s)	223, 578, 1081
MalI	GATC	4 cut(s)	330, 426, 735, 1019
MboI	GATC	4 cut(s)	328, 424, 733, 1017
MboII	GAAGA	6 cut(s)	39, 49, 85, 88, 116, 913
MfeI	CAATTG	1 cut(s)	461
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	4 cut(s)	321, 461, 554, 852
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	3 cut(s)	155, 818, 902
MmeI	TCCRAC	1 cut(s)	838
MnlI	CCTC	6 cut(s)	148, 253, 300, 311, 601, 948
Mox20I	TGGCCA	1 cut(s)	572
Mph1103I	ATGCAT	2 cut(s)	678, 841
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	2 cut(s)	480, 719
Msp20I	TGGCCA	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	1087
MunI	CAATTG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	1087
MwoI	GCNNNNNNNGC	3 cut(s)	24, 245, 377
NdeI	CATATG	2 cut(s)	520, 597
NdeII	GATC	4 cut(s)	328, 424, 733, 1017
NlaIII	CATG	3 cut(s)	271, 361, 785
NlaIV	GGNNCC	1 cut(s)	540
NmeAIII	GCCGAG	1 cut(s)	736
NmuCI	GTSAC	3 cut(s)	223, 578, 1081
NsiI	ATGCAT	2 cut(s)	678, 841
PfeI	GAWTC	2 cut(s)	738, 1026
Pfl23II	CGTACG	1 cut(s)	1004
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	6 cut(s)	131, 190, 238, 368, 778, 795
PleI	GAGTC	3 cut(s)	155, 818, 901
PpsI	GAGTC	3 cut(s)	155, 818, 901
Psp6I	CCWGG	1 cut(s)	1085
PspFI	CCCAGC	1 cut(s)	706
PspGI	CCWGG	1 cut(s)	1085
PspLI	CGTACG	1 cut(s)	1004
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	72
PstNI	CAGNNNCTG	2 cut(s)	24, 239
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	3 cut(s)	82, 1006, 1103
RsaNI	GTAC	3 cut(s)	81, 1005, 1102
SaqAI	TTAA	2 cut(s)	480, 719
SatI	GCNGC	6 cut(s)	130, 189, 237, 367, 777, 794
Sau3AI	GATC	4 cut(s)	328, 424, 733, 1017
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	3 cut(s)	155, 818, 902
ScrFI	CCNGG	1 cut(s)	1087
SfaNI	GCATC	5 cut(s)	509, 570, 663, 685, 826
SfcI	CTRYAG	1 cut(s)	373
Sse9I	AATT	4 cut(s)	321, 461, 554, 852
SsiI	CCGC	1 cut(s)	649
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	3 cut(s)	69, 333, 630
StyD4I	CCNGG	1 cut(s)	1085
TaaI	ACNGT	4 cut(s)	478, 695, 810, 1101
TaiI	ACGT	1 cut(s)	1006
TaqI	TCGA	4 cut(s)	102, 118, 736, 831
TaqII	GACCGA	1 cut(s)	187
TasI	AATT	4 cut(s)	321, 461, 554, 852
TatI	WGTACW	1 cut(s)	1101
TfiI	GAWTC	2 cut(s)	738, 1026
Tru1I	TTAA	2 cut(s)	480, 719
Tru9I	TTAA	2 cut(s)	480, 719
TscAI	CASTG	4 cut(s)	190, 198, 813, 1027
TseFI	GTSAC	3 cut(s)	223, 578, 1081
TseI	GCWGC	6 cut(s)	129, 188, 236, 366, 776, 793
Tsp45I	GTSAC	3 cut(s)	223, 578, 1081
TspDTI	ATGAA	4 cut(s)	88, 471, 507, 584
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	4 cut(s)	190, 198, 813, 1027
Van91I	CCANNNNNTGG	1 cut(s)	548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	939
XspI	CTAG	3 cut(s)	69, 333, 630
Zsp2I	ATGCAT	2 cut(s)	678, 841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.