AT3G24480

Leucine-rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007583
Physical Location & Seq
Reverse (-)
8901154 .. 8902835
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24480.1

Sequence Viewer

Length: 1485 bp
ATGAAGAACAACACCACTCAATCTCTCCTTCTCCTTCTCCTCTTCTTCTTCTTCTTCTTTGAAATCTCTCATTCTCTCTCAATCTCATCCAATGCTCCTCTCTCCGACACCGAAGTCAGATTCATCCAACGCCGTCAACTTCTCTACTACCGCGACGAGTTCGGTGACCGTGGTGAGAATGTCACAGTAGATCCATCACTAATCTTCGAGAATCCGCGGCTTCGTAGTGCTTACATAGCTCTTCAAGCTTGGAAACAAGCTATTCTCTCTGATCCTAATAATATCACTGTTAATTGGATCGGATCCAATGTCTGTAACTACACCGGAGTTTTCTGTTCTAAAGCTCTTGATAACCGGAAGATCCGTACCGTCGCCGGAATCGATCTCAACCACGCCGATATCGCTGGGTATTTACCTGAAGAGCTTGGTTTGTTAACAGATCTAGCTTTGTTTCATGTTAATTCGAATCGATTCTGTGGTACTGTTCCTCATAAGTTCAAGCAGCTTAAGCTTTTGTTCGAGCTTGATCTTAGTAACAATCGGTTCGCCGGAAAGTTTCCCACGGTGGTTCTTCATTTGCCGTCGTTGAAGTTCTTAGATCTCCGGTTTAATGAGTTTGAAGGAACCGTACCGAAAGAGCTTTTTAGTAAAAATCTAGATGCGATTTTTATAAACCATAACCGGTTCCGGTTTGAGTTACCGGAAAATTTCGGTGATTCTCCGGTTTCGGTTATTGTTCTTGCGAATAATCATTTCCATGGTTGTATTCCGACGAGTTTGGTGGAGATGAAGAATCTTAATGAGATTATTTTCATGAACAATGGTTTGAATTCTTGTTTACCGGCGGATATCGGAAGGTTGAAGAATGTGACGGTGTTTGATGTTAGTTTTAATGAGCTTGTTGGTCCGTTGCCGGAGAGTGTTGGTGGTATGGTGGAGGTTGAGCAGTTGAATGTTGCTCATAATTTGTTATCTGGGAAGATTCCGGCGAGTATTTGTCAGCTTCCTAAGCTTGAGAATTTCACTTATAGTTATAATTTCTTTACTGGTGAAGCTCCTGTGTGTTTGAGGTTGTCTGAGTTTGATGATCGGAGAAATTGTTTGCCCGGAAGACCTGCTCAGAGATCTTCACGGCAATGTTCAGCTTTCTTGTCACGGCCTTCGGTGGATTGTGGATCTTTTGGTTGTGGTCGTTCTGTTGTTAAACCGTCTCCACCTATTGTAGCATTACCGCCGCCTCCTCCGCCATCGCCTCCGTTACCTCCACCTGTTTACTCTCCTCCGCCGTCACCTCCTGTCTTCTCTCCTCCACCGTCACCCCCTGTATACTCTCCTCCACCGCCACCATCAATCCATTACAGTTCTCCTCCTCCACCGCCAGTCCATCACAGTTCTCCTCCACCACCATCACCTGAATTTGAAGGGCCATTACCGCCGGTGATCGGAGTATCCTATGCATCTCCCCCACCACCACCCTTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005199 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8

Protein Analysis

494

Amino Acids

54.7

Weight (kDa)

6.46

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 149 - 205 6.8e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 671, 1035
AasI GACNNNNNNGTC 1 cut(s) 113
Acc36I ACCTGC 1 cut(s) 1123
AccI GTMKAC 1 cut(s) 1326
AccII CGCG 2 cut(s) 153, 217
AclWI GGATC 7 cut(s) 185, 266, 297, 305, 310, 355, 1183
AcsI RAATTY 4 cut(s) 706, 829, 1018, 1415
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 3 cut(s) 367, 481, 630
AfiI CCNNNNNNNGG 1 cut(s) 1442
AflII CTTAAG 1 cut(s) 506
AgeI ACCGGT 1 cut(s) 681
AgsI TTSAA 9 cut(s) 62, 245, 499, 589, 620, 829, 862, 952, 1421
Alw26I GTCTC 1 cut(s) 1215
AlwI GGATC 7 cut(s) 185, 266, 297, 305, 310, 355, 1183
AoxI GGCC 2 cut(s) 1157, 1424
ApeKI GCWGC 1 cut(s) 502
ApoI RAATTY 4 cut(s) 706, 829, 1018, 1415
AsiGI ACCGGT 1 cut(s) 681
Asp700I GAANNNNTTC 1 cut(s) 470
AspS9I GGNCC 2 cut(s) 905, 1424
AsuC2I CCSGG 1 cut(s) 1107
AsuHPI GGTGA 8 cut(s) 176, 185, 725, 1061, 1281, 1308, 1401, 1450
AsuII TTCGAA 1 cut(s) 464
AvaII GGWCC 1 cut(s) 905
BamHI GGATCC 1 cut(s) 302
BarI GAAGNNNNNNTAC 4 cut(s) 612, 644, 1413, 1445
BbsI GAAGAC 2 cut(s) 1117, 1291
BbvI GCAGC 1 cut(s) 514
BccI CCATC 5 cut(s) 202, 1255, 1354, 1392, 1414
BceAI ACGGC 5 cut(s) 117, 565, 1148, 1172, 1270
BciVI GTATCC 1 cut(s) 1459
BcnI CCSGG 1 cut(s) 1107
BcoDI GTCTC 1 cut(s) 1215
BfaI CTAG 2 cut(s) 443, 656
BfrI CTTAAG 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 1123
BfuI GTATCC 1 cut(s) 1459
BglII AGATCT 3 cut(s) 439, 598, 1124
BisI GCNGC 3 cut(s) 218, 503, 1235
BlsI GCNGC 3 cut(s) 219, 504, 1236
Bme1390I CCNGG 1 cut(s) 1107
Bme18I GGWCC 1 cut(s) 905
BmgT120I GGNCC 2 cut(s) 905, 1424
BmiI GGNNCC 3 cut(s) 304, 625, 686
BmrFI CCNGG 1 cut(s) 1107
BmsI GCATC 2 cut(s) 649, 1466
BpiI GAAGAC 2 cut(s) 1117, 1291
Bpu10I CCTNAGC 1 cut(s) 1008
Bpu14I TTCGAA 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 1034
BpuMI CCSGG 1 cut(s) 1107
Bsa29I ATCGAT 2 cut(s) 381, 469
BsaJI CCNNGG 4 cut(s) 169, 215, 561, 757
BsaWI WCCGGW 7 cut(s) 323, 354, 603, 681, 687, 700, 721
BsaXI ACNNNNNCTCC 2 cut(s) 1084, 1114
Bsc4I CCNNNNNNNGG 1 cut(s) 1442
Bse118I RCCGGY 3 cut(s) 681, 841, 1435
Bse1I ACTGG 2 cut(s) 1051, 1379
Bse3DI GCAATG 1 cut(s) 1142
BseCI ATCGAT 2 cut(s) 381, 469
BseDI CCNNGG 4 cut(s) 169, 215, 561, 757
BseGI GGATG 2 cut(s) 86, 123
BseLI CCNNNNNNNGG 1 cut(s) 1442
BseMI GCAATG 1 cut(s) 1142
BseMII CTCAG 2 cut(s) 1068, 1133
BseNI ACTGG 2 cut(s) 1051, 1379
BseRI GAGGAG 9 cut(s) 29, 87, 1230, 1269, 1296, 1323, 1356, 1359, 1386
BseXI GCAGC 1 cut(s) 514
BseYI CCCAGC 1 cut(s) 404
Bsh1236I CGCG 2 cut(s) 153, 217
BshFI GGCC 2 cut(s) 1159, 1426
BshTI ACCGGT 1 cut(s) 681
BshVI ATCGAT 2 cut(s) 381, 469
BslI CCNNNNNNNGG 1 cut(s) 1442
BsmAI GTCTC 1 cut(s) 1215
BsmBI CGTCTC 1 cut(s) 1215
BsnI GGCC 2 cut(s) 1159, 1426
Bsp119I TTCGAA 1 cut(s) 464
Bsp19I CCATGG 1 cut(s) 757
BspANI GGCC 2 cut(s) 1159, 1426
BspCNI CTCAG 2 cut(s) 1069, 1132
BspDI ATCGAT 2 cut(s) 381, 469
BspFNI CGCG 2 cut(s) 153, 217
BspHI TCATGA 1 cut(s) 813
BspLI GGNNCC 3 cut(s) 304, 625, 686
BspMI ACCTGC 1 cut(s) 1123
BspPI GGATC 7 cut(s) 185, 266, 297, 305, 310, 355, 1183
BspQI GCTCTTC 2 cut(s) 246, 414
BspT104I TTCGAA 1 cut(s) 464
BspTI CTTAAG 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 1142
BsrFI RCCGGY 3 cut(s) 681, 841, 1435
BsrI ACTGG 2 cut(s) 1051, 1379
BssAI RCCGGY 3 cut(s) 681, 841, 1435
BssECI CCNNGG 4 cut(s) 169, 215, 561, 757
BssNAI GTATAC 1 cut(s) 1327
BssT1I CCWWGG 1 cut(s) 757
Bst1107I GTATAC 1 cut(s) 1327
Bst6I CTCTTC 3 cut(s) 47, 246, 414
BstAFI CTTAAG 1 cut(s) 506
BstBI TTCGAA 1 cut(s) 464
BstDEI CTNAG 5 cut(s) 530, 595, 1008, 1077, 1119
BstDSI CCRYGG 4 cut(s) 169, 215, 561, 757
BstEII GGTNACC 1 cut(s) 164
BstF5I GGATG 2 cut(s) 86, 123
BstFNI CGCG 2 cut(s) 153, 217
BstMAI GTCTC 1 cut(s) 1215
BstMWI GCNNNNNNNGC 7 cut(s) 236, 245, 401, 508, 1009, 1243, 1432
BstPI GGTNACC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 1105
BstUI CGCG 2 cut(s) 153, 217
BstV1I GCAGC 1 cut(s) 514
BstV2I GAAGAC 2 cut(s) 1117, 1291
BstX2I RGATCY 7 cut(s) 190, 302, 360, 439, 598, 1124, 1175
BstYI RGATCY 7 cut(s) 190, 302, 360, 439, 598, 1124, 1175
BstZ17I GTATAC 1 cut(s) 1327
Bsu15I ATCGAT 2 cut(s) 381, 469
BsuI GTATCC 1 cut(s) 1459
BsuRI GGCC 2 cut(s) 1159, 1426
BsuTUI ATCGAT 2 cut(s) 381, 469
BtgI CCRYGG 4 cut(s) 169, 215, 561, 757
BtgZI GCGATG 1 cut(s) 1233
BtsCI GGATG 2 cut(s) 86, 123
BtsIMutI CAGTG 1 cut(s) 285
BveI ACCTGC 1 cut(s) 1123
CciI TCATGA 1 cut(s) 813
Cfr10I RCCGGY 3 cut(s) 681, 841, 1435
Cfr13I GGNCC 2 cut(s) 905, 1424
Cfr42I CCGCGG 1 cut(s) 218
ClaI ATCGAT 2 cut(s) 381, 469
Csp6I GTAC 3 cut(s) 366, 480, 629
CspAI ACCGGT 1 cut(s) 681
CviAII CATG 3 cut(s) 455, 758, 814
CviQI GTAC 3 cut(s) 366, 480, 629
DdeI CTNAG 5 cut(s) 530, 595, 1008, 1077, 1119
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
Eam1104I CTCTTC 3 cut(s) 47, 246, 414
EarI CTCTTC 3 cut(s) 47, 246, 414
EciI GGCGGA 3 cut(s) 860, 1233, 1272
Eco130I CCWWGG 1 cut(s) 757
Eco32I GATATC 2 cut(s) 400, 850
Eco47I GGWCC 1 cut(s) 905
Eco57I CTGAAG 1 cut(s) 438
Eco91I GGTNACC 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 164
EcoRI GAATTC 1 cut(s) 829
EcoRV GATATC 2 cut(s) 400, 850
EcoT14I CCWWGG 1 cut(s) 757
EcoT22I ATGCAT 1 cut(s) 1459
ErhI CCWWGG 1 cut(s) 757
Esp3I CGTCTC 1 cut(s) 1215
FaeI CATG 3 cut(s) 458, 761, 817
FatI CATG 3 cut(s) 454, 757, 813
FblI GTMKAC 1 cut(s) 1326
Fnu4HI GCNGC 3 cut(s) 218, 503, 1235
FokI GGATG 2 cut(s) 73, 110
Fsp4HI GCNGC 3 cut(s) 218, 503, 1235
FspBI CTAG 2 cut(s) 443, 656
GluI GCNGC 3 cut(s) 218, 503, 1235
GsaI CCCAGC 1 cut(s) 408
HaeIII GGCC 2 cut(s) 1159, 1426
Hin1II CATG 3 cut(s) 458, 761, 817
HincII GTYRAC 2 cut(s) 137, 435
HindII GTYRAC 2 cut(s) 137, 435
HindIII AAGCTT 3 cut(s) 246, 509, 1010
HinfI GANTC 8 cut(s) 120, 211, 378, 466, 471, 716, 793, 982
HpaI GTTAAC 1 cut(s) 435
HphI GGTGA 8 cut(s) 176, 185, 725, 1061, 1281, 1308, 1401, 1450
Hpy166II GTNNAC 5 cut(s) 137, 435, 839, 1273, 1327
Hpy188III TCNNGA 4 cut(s) 208, 347, 656, 814
Hpy8I GTNNAC 5 cut(s) 137, 435, 839, 1273, 1327
Hpy99I CGWCG 4 cut(s) 158, 374, 586, 775
HpyAV CCTTC 6 cut(s) 38, 44, 614, 849, 1170, 1415
HpyCH4V TGCA 1 cut(s) 1457
HpyF10VI GCNNNNNNNGC 7 cut(s) 236, 245, 401, 508, 1009, 1243, 1432
HpyF3I CTNAG 5 cut(s) 530, 595, 1008, 1077, 1119
Hsp92II CATG 3 cut(s) 458, 761, 817
KspAI GTTAAC 1 cut(s) 435
KspI CCGCGG 1 cut(s) 218
LguI GCTCTTC 2 cut(s) 246, 414
LmnI GCTCC 2 cut(s) 100, 1060
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 2 cut(s) 649, 1466
MaeI CTAG 2 cut(s) 443, 656
MflI RGATCY 7 cut(s) 190, 302, 360, 439, 598, 1124, 1175
MluCI AATT 9 cut(s) 292, 460, 706, 829, 964, 1018, 1036, 1096, 1415
MmeI TCCRAC 3 cut(s) 129, 151, 794
Mph1103I ATGCAT 1 cut(s) 1459
MroXI GAANNNNTTC 1 cut(s) 470
MseI TTAA 8 cut(s) 291, 434, 459, 507, 609, 798, 891, 1203
MslI CAYNNNNRTG 2 cut(s) 756, 1135
MspA1I CMGCKG 1 cut(s) 217
MspCI CTTAAG 1 cut(s) 506
MspR9I CCNGG 1 cut(s) 1107
MvnI CGCG 2 cut(s) 153, 217
MwoI GCNNNNNNNGC 7 cut(s) 236, 245, 401, 508, 1009, 1243, 1432
NciI CCSGG 1 cut(s) 1107
NcoI CCATGG 1 cut(s) 757
NlaIII CATG 3 cut(s) 458, 761, 817
NlaIV GGNNCC 3 cut(s) 304, 625, 686
NmuCI GTSAC 6 cut(s) 164, 181, 868, 1152, 1287, 1314
NsiI ATGCAT 1 cut(s) 1459
NspV TTCGAA 1 cut(s) 464
PagI TCATGA 1 cut(s) 813
PciSI GCTCTTC 2 cut(s) 246, 414
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 8 cut(s) 120, 211, 378, 466, 471, 716, 793, 982
PinAI ACCGGT 1 cut(s) 681
PkrI GCNGC 3 cut(s) 219, 504, 1236
PsiI TTATAA 2 cut(s) 671, 1035
PspEI GGTNACC 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 404
PspN4I GGNNCC 3 cut(s) 304, 625, 686
PspPI GGNCC 2 cut(s) 905, 1424
PsuI RGATCY 7 cut(s) 190, 302, 360, 439, 598, 1124, 1175
RsaI GTAC 3 cut(s) 367, 481, 630
RsaNI GTAC 3 cut(s) 366, 480, 629
RseI CAYNNNNRTG 2 cut(s) 756, 1135
SacII CCGCGG 1 cut(s) 218
SapI GCTCTTC 2 cut(s) 246, 414
SaqAI TTAA 8 cut(s) 291, 434, 459, 507, 609, 798, 891, 1203
SatI GCNGC 3 cut(s) 218, 503, 1235
Sau96I GGNCC 2 cut(s) 905, 1424
ScrFI CCNGG 1 cut(s) 1107
SfaNI GCATC 2 cut(s) 649, 1466
Sfr303I CCGCGG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 464
SgrAI CRCCGGYG 1 cut(s) 1435
SgrBI CCGCGG 1 cut(s) 218
SinI GGWCC 1 cut(s) 905
SmiMI CAYNNNNRTG 2 cut(s) 756, 1135
SmlI CTYRAG 2 cut(s) 506, 1013
SmoI CTYRAG 2 cut(s) 506, 1013
Sse9I AATT 9 cut(s) 292, 460, 706, 829, 964, 1018, 1036, 1096, 1415
SspMI CTAG 2 cut(s) 443, 656
StyD4I CCNGG 1 cut(s) 1105
StyI CCWWGG 1 cut(s) 757
TaqI TCGA 5 cut(s) 207, 381, 464, 469, 519
TasI AATT 9 cut(s) 292, 460, 706, 829, 964, 1018, 1036, 1096, 1415
TauI GCSGC 2 cut(s) 220, 1237
TfiI GAWTC 8 cut(s) 120, 211, 378, 466, 471, 716, 793, 982
Tru1I TTAA 8 cut(s) 291, 434, 459, 507, 609, 798, 891, 1203
Tru9I TTAA 8 cut(s) 291, 434, 459, 507, 609, 798, 891, 1203
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 6 cut(s) 164, 181, 868, 1152, 1287, 1314
TseI GCWGC 1 cut(s) 502
Tsp45I GTSAC 6 cut(s) 164, 181, 868, 1152, 1287, 1314
TspDTI ATGAA 7 cut(s) 17, 112, 443, 563, 802, 803, 830
TspGWI ACGGA 3 cut(s) 353, 897, 1245
TspRI CASTG 1 cut(s) 292
Vha464I CTTAAG 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 905
XapI RAATTY 4 cut(s) 706, 829, 1018, 1415
XbaI TCTAGA 1 cut(s) 655
XmiI GTMKAC 1 cut(s) 1326
XmnI GAANNNNTTC 1 cut(s) 470
XspI CTAG 2 cut(s) 443, 656
Zsp2I ATGCAT 1 cut(s) 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.