Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007583

Physical Location & Seq

Genomic Coordinates Forward (+)

4674387 .. 4675492

Gene Structure 1106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGAAGAAGACCACTCTCTTTGATTTTTCTCTTCTTCTCCTCACTGCTGCTTTCTTCTTTGCTTCTACCCTCTCCTCATCCAGCCACATTATCAGCCATGGAAGTCTCACCGACGCCGAGGCCCTCTACATCAAGCAGCGCCAGCTGCTCTACTACCGGGACGAGTCCGGCGACCGGGGAGAGATCGTGAAAGTAGACCCTTCTCTGGTTTTCGAAAACAAGAGACTCCGAAATGCTTACATAGCATTGCAAGCTTGGAAGGAGGCTATTCTCTCCGACCCTTTCAATCTCACCGGGGATTGGGTCGGATCTAATGTCTGCAGCTACACCGGAGTGTTCTGTGCTCCGGCGCCGGACAACAGCTCTATCCGAACCGTCGCCGGCATTGACCTCAACCACGGCGATATTGCTGGCTACTTGCCGGAGGAGCTTGGGCTGCTCACAGATCTCGCATTGTTCCACATCAATTCCAACAGGTTCTGTGGGACTGTGCCGCACAAATTCCGGAACCTGAAGCTGCTTTTCGAGCTGGATATCAGTAACAATCGATTTGCCGTTCGAGGGGACTGTGCCCAAGGAGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005199 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

196

Amino Acids

21.73

Weight (kDa)

6.19

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24480 AT4G13340
fragaria_vesca	FvH4_1g05180 FvH4_1g05180 FvH4_1g05180 FvH4_1g05180
malus_domestica	MD09G1216000.v1.1 MD15G1188400.v1.1
prunus_persica	Prupe.5G056300_v2.0.a1 Prupe.7G228100_v2.0.a1
pyrus_communis	pycom02g04230 pycom15g16890
rosa_chinensis	RchiOBHm_Chr2g0090891
rosa_laevigata	RLG00000016154
rosa_multiflora	Rmu_co8180576.1_g000001 Rmu_sc0000792.1_g000014 Rmu_sc0014837.1_g000001
rosa_roxburghii	Rroxscaffold_2G00150760
rosa_rugosa	Rorug02G0010800
rosa_samantha	Rh2AG057100 Rh2BG055600 Rh2CG057900 Rh2DG056500
rosa_wichuraiana	Rw2G005230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	507
AciI	CCGC	1 cut(s)	497
AclWI	GGATC	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	536
AcyI	GRCGYC	2 cut(s)	117, 353
AfiI	CCNNNNNNNGG	4 cut(s)	177, 208, 303, 564
AgsI	TTSAA	1 cut(s)	289
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	8 cut(s)	148, 257, 327, 366, 433, 520, 532, 584
AluI	AGCT	8 cut(s)	148, 257, 327, 366, 433, 520, 532, 584
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	113, 220
AlwI	GGATC	1 cut(s)	319
AlwNI	CAGNNNCTG	1 cut(s)	483
Aor13HI	TCCGGA	1 cut(s)	507
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	6 cut(s)	50, 139, 148, 324, 439, 520
ApoI	RAATTY	1 cut(s)	503
AspLEI	GCGC	2 cut(s)	144, 355
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	3 cut(s)	161, 179, 298
AsuHPI	GGTGA	2 cut(s)	103, 286
AsuII	TTCGAA	1 cut(s)	216
BaeGI	GKGCMC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	6 cut(s)	37, 135, 151, 336, 426, 507
BceAI	ACGGC	2 cut(s)	418, 542
BcnI	CCSGG	3 cut(s)	161, 179, 298
BcoDI	GTCTC	2 cut(s)	113, 220
BfmI	CTRYAG	1 cut(s)	322
BfoI	RGCGCY	2 cut(s)	145, 356
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	7 cut(s)	51, 140, 149, 325, 440, 497, 521
BlsI	GCNGC	7 cut(s)	52, 141, 150, 326, 441, 498, 522
Bme1390I	CCNGG	3 cut(s)	161, 179, 298
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	354, 512
BmrFI	CCNGG	3 cut(s)	161, 179, 298
BpiI	GAAGAC	1 cut(s)	17
Bpu14I	TTCGAA	1 cut(s)	216
BpuMI	CCSGG	3 cut(s)	161, 179, 298
Bsa29I	ATCGAT	1 cut(s)	550
BsaHI	GRCGYC	2 cut(s)	117, 353
BsaJI	CCNNGG	6 cut(s)	100, 120, 178, 297, 400, 577
BsaWI	WCCGGW	2 cut(s)	332, 507
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	4 cut(s)	177, 208, 303, 564
Bse118I	RCCGGY	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	248
BseAI	TCCGGA	1 cut(s)	507
BseCI	ATCGAT	1 cut(s)	550
BseDI	CCNNGG	6 cut(s)	100, 120, 178, 297, 400, 577
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	4 cut(s)	177, 208, 303, 564
BseMI	GCAATG	1 cut(s)	248
BseRI	GAGGAG	3 cut(s)	32, 67, 443
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	6 cut(s)	37, 135, 151, 336, 426, 507
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	352
BshVI	ATCGAT	1 cut(s)	550
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	349
BslFI	GGGAC	3 cut(s)	176, 502, 581
BslI	CCNNNNNNNGG	4 cut(s)	177, 208, 303, 564
BsmAI	GTCTC	2 cut(s)	113, 220
BsmFI	GGGAC	3 cut(s)	176, 502, 581
BsnI	GGCC	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	349, 577
Bsp13I	TCCGGA	1 cut(s)	507
Bsp143I	GATC	3 cut(s)	186, 311, 448
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	1 cut(s)	125
BspDI	ATCGAT	1 cut(s)	550
BspEI	TCCGGA	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	354, 512
BspMAI	CTGCAG	1 cut(s)	326
BspPI	GGATC	1 cut(s)	319
BspT104I	TTCGAA	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	6 cut(s)	100, 120, 178, 297, 400, 577
BssMI	GATC	3 cut(s)	186, 311, 448
BssNI	GRCGYC	2 cut(s)	117, 353
BssT1I	CCWWGG	2 cut(s)	100, 577
Bst4CI	ACNGT	3 cut(s)	379, 493, 572
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	2 cut(s)	117, 353
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	4 cut(s)	146, 255, 385, 415
BstDSI	CCRYGG	2 cut(s)	100, 400
BstF5I	GGATG	1 cut(s)	80
BstH2I	RGCGCY	2 cut(s)	145, 356
BstHHI	GCGC	2 cut(s)	144, 355
BstKTI	GATC	3 cut(s)	189, 314, 451
BstMAI	GTCTC	2 cut(s)	113, 220
BstMBI	GATC	3 cut(s)	186, 311, 448
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	8 cut(s)	145, 148, 245, 254, 430, 439, 529, 581
BstSCI	CCNGG	3 cut(s)	159, 177, 296
BstSFI	CTRYAG	1 cut(s)	322
BstSLI	GKGCMC	1 cut(s)	577
BstV1I	GCAGC	6 cut(s)	37, 135, 151, 336, 426, 507
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	311, 448
BstYI	RGATCY	2 cut(s)	311, 448
Bsu15I	ATCGAT	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	125
BsuTUI	ATCGAT	1 cut(s)	550
BtgI	CCRYGG	2 cut(s)	100, 400
BtsCI	GGATG	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	4 cut(s)	146, 255, 385, 415
CaiI	CAGNNNCTG	1 cut(s)	483
CfoI	GCGC	2 cut(s)	144, 355
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	550
CseI	GACGC	1 cut(s)	125
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	1 cut(s)	101
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	3 cut(s)	188, 313, 450
DpnII	GATC	3 cut(s)	186, 311, 448
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	100, 577
Eco32I	GATATC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	536
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	100, 577
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
ErhI	CCWWGG	2 cut(s)	100, 577
FaeI	CATG	1 cut(s)	104
FaiI	YATR	2 cut(s)	102, 245
FaqI	GGGAC	3 cut(s)	176, 502, 581
FatI	CATG	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	7 cut(s)	51, 140, 149, 325, 440, 497, 521
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	7 cut(s)	51, 140, 149, 325, 440, 497, 521
GlaI	GCGC	2 cut(s)	143, 354
GluI	GCNGC	7 cut(s)	51, 140, 149, 325, 440, 497, 521
HaeII	RGCGCY	2 cut(s)	145, 356
HaeIII	GGCC	1 cut(s)	125
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	144, 355
Hin1I	GRCGYC	2 cut(s)	117, 353
Hin1II	CATG	1 cut(s)	104
Hin6I	GCGC	2 cut(s)	142, 353
HinP1I	GCGC	2 cut(s)	142, 353
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	2 cut(s)	167, 228
HphI	GGTGA	2 cut(s)	103, 286
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	4 cut(s)	233, 280, 311, 374
Hpy188III	TCNNGA	2 cut(s)	190, 508
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	2 cut(s)	119, 383
HpyAV	CCTTC	2 cut(s)	213, 256
HpyCH4III	ACNGT	3 cut(s)	379, 493, 572
HpyCH4V	TGCA	2 cut(s)	253, 324
HpyF10VI	GCNNNNNNNGC	8 cut(s)	145, 148, 245, 254, 430, 439, 529, 581
Hsp92I	GRCGYC	2 cut(s)	117, 353
Hsp92II	CATG	1 cut(s)	104
HspAI	GCGC	2 cut(s)	142, 353
KasI	GGCGCC	1 cut(s)	352
Kpn2I	TCCGGA	1 cut(s)	507
KroI	GCCGGC	1 cut(s)	383
KroNI	GCCGGC	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	186, 311, 448
LmnI	GCTCC	3 cut(s)	352, 430, 581
Lsp1109I	GCAGC	6 cut(s)	37, 135, 151, 336, 426, 507
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	3 cut(s)	188, 313, 450
MboI	GATC	3 cut(s)	186, 311, 448
MboII	GAAGA	6 cut(s)	16, 19, 22, 26, 29, 49
MflI	RGATCY	2 cut(s)	311, 448
MhlI	GDGCHC	2 cut(s)	349, 577
MluCI	AATT	2 cut(s)	469, 503
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	2 cut(s)	176, 222
MmeI	TCCRAC	3 cut(s)	289, 303, 498
MnlI	CCTC	9 cut(s)	53, 83, 88, 115, 137, 259, 404, 421, 557
MroI	TCCGGA	1 cut(s)	507
MroNI	GCCGGC	1 cut(s)	383
MslI	CAYNNNNRTG	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	148
MspR9I	CCNGG	3 cut(s)	161, 179, 298
MwoI	GCNNNNNNNGC	8 cut(s)	145, 148, 245, 254, 430, 439, 529, 581
NaeI	GCCGGC	1 cut(s)	385
NarI	GGCGCC	1 cut(s)	353
NciI	CCSGG	3 cut(s)	161, 179, 298
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	3 cut(s)	186, 311, 448
NgoMIV	GCCGGC	1 cut(s)	383
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	354, 512
NmeAIII	GCCGAG	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	216
OliI	CACNNNNGTG	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdiI	GCCGGC	1 cut(s)	385
PkrI	GCNGC	7 cut(s)	52, 141, 150, 326, 441, 498, 522
PleI	GAGTC	2 cut(s)	175, 222
PluTI	GGCGCC	1 cut(s)	356
PpsI	GAGTC	2 cut(s)	175, 222
PspN4I	GGNNCC	2 cut(s)	354, 512
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	483
PsuI	RGATCY	2 cut(s)	311, 448
PvuII	CAGCTG	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	335
SatI	GCNGC	7 cut(s)	51, 140, 149, 325, 440, 497, 521
Sau3AI	GATC	3 cut(s)	186, 311, 448
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	2 cut(s)	176, 222
ScrFI	CCNGG	3 cut(s)	161, 179, 298
SduI	GDGCHC	2 cut(s)	349, 577
SfcI	CTRYAG	1 cut(s)	322
SfoI	GGCGCC	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	469, 503
SsiI	CCGC	1 cut(s)	497
SspDI	GGCGCC	1 cut(s)	352
StyD4I	CCNGG	3 cut(s)	159, 177, 296
StyI	CCWWGG	2 cut(s)	100, 577
TaaI	ACNGT	3 cut(s)	379, 493, 572
TaqI	TCGA	4 cut(s)	216, 528, 550, 562
TasI	AATT	2 cut(s)	469, 503
TauI	GCSGC	1 cut(s)	499
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	6 cut(s)	50, 139, 148, 324, 439, 520
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.