Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007583

Physical Location & Seq

Genomic Coordinates Forward (+)

6095186 .. 6095923

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G056300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATATGGTCACGGTTACAGCACAAAAGACAAATACCAAAAGCGGCCCTCGTGAAGAAGGGTATGGTCATTGGTCACCCTCAGTTTCACTTGTGCCTTCTCATCACCTTCGCTCTCGCCTCCTCATCACTCTCTGTCGTCTGTGGTGCGCAGGAGCACCACCACCACAACAACATTATCAGCCATGGAGCTCTCTCCGACACCGAAGCCCTCTACATCAAGCAGCGCCAGCTCCTCTACTACGGGGACGAGTTCGGCGACCGAGACGAGCTAGTCACGGTCGACCCATCTCTGGTTTTCGAGAACCAGAGAATCAGAAATGCTTACATGGCTTTACAAGCTTGGAAGCAAGCCATTCTCTCCGACCCGCTTAATCTCACGGGTAATTGGGTCGGATCTAATGTCTGCAACTGTATTCAATTTAATCAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005199 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

145

Amino Acids

16.31

Weight (kDa)

7.77

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24480 AT4G13340
fragaria_vesca	FvH4_1g05180 FvH4_1g05180 FvH4_1g05180 FvH4_1g05180
malus_domestica	MD09G1216000.v1.1 MD15G1188400.v1.1
prunus_persica	Prupe.5G056300_v2.0.a1 Prupe.7G228100_v2.0.a1
pyrus_communis	pycom02g04230 pycom15g16890
rosa_chinensis	RchiOBHm_Chr2g0090891
rosa_laevigata	RLG00000016154
rosa_multiflora	Rmu_co8180576.1_g000001 Rmu_sc0000792.1_g000014 Rmu_sc0014837.1_g000001
rosa_roxburghii	Rroxscaffold_2G00150760
rosa_rugosa	Rorug02G0010800
rosa_samantha	Rh2AG057100 Rh2BG055600 Rh2CG057900 Rh2DG056500
rosa_wichuraiana	Rw2G005230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc16I	TGCGCA	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	2 cut(s)	44, 368
AclWI	GGATC	1 cut(s)	403
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	419
AluBI	AGCT	4 cut(s)	191, 232, 271, 341
AluI	AGCT	4 cut(s)	191, 232, 271, 341
Alw21I	GWGCWC	2 cut(s)	159, 193
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	223
AspLEI	GCGC	2 cut(s)	151, 228
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	68, 97
BanII	GRGCYC	1 cut(s)	193
BauI	CACGAG	1 cut(s)	50
Bbv12I	GWGCWC	2 cut(s)	159, 193
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	431
BfoI	RGCGCY	1 cut(s)	229
BisI	GCNGC	2 cut(s)	45, 224
BlsI	GCNGC	2 cut(s)	46, 225
BmgT120I	GGNCC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	2 cut(s)	112, 224
BseXI	GCAGC	1 cut(s)	235
Bsh1285I	CGRYCG	2 cut(s)	262, 282
BshFI	GGCC	1 cut(s)	47
BsiEI	CGRYCG	2 cut(s)	262, 282
BsiHKAI	GWGCWC	2 cut(s)	159, 193
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	159, 193
Bsp143I	GATC	1 cut(s)	395
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	2 cut(s)	44, 368
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	395
BssSI	CACGAG	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	184
Bst2BI	CACGAG	1 cut(s)	50
Bst4CI	ACNGT	4 cut(s)	15, 280, 413, 432
BstC8I	GCNNGC	2 cut(s)	230, 351
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	184
BstEII	GGTNACC	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	2 cut(s)	151, 228
BstKTI	GATC	1 cut(s)	398
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	395
BstMCI	CGRYCG	2 cut(s)	262, 282
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 329, 338
BstPI	GGTNACC	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	230, 351
CfoI	GCGC	2 cut(s)	151, 228
Cfr13I	GGNCC	1 cut(s)	46
CviAII	CATG	2 cut(s)	185, 328
CviJI	RGCY	9 cut(s)	47, 183, 191, 209, 232, 271, 332, 341, 353
CviKI_1	RGCY	9 cut(s)	47, 183, 191, 209, 232, 271, 332, 341, 353
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	397
DpnII	GATC	1 cut(s)	395
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	191
Eco91I	GGTNACC	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	2 cut(s)	188, 331
FaiI	YATR	4 cut(s)	7, 65, 186, 329
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	184, 327
FauI	CCCGC	1 cut(s)	375
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	45, 224
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	2 cut(s)	45, 224
FspBI	CTAG	1 cut(s)	272
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	2 cut(s)	150, 227
GluI	GCNGC	2 cut(s)	45, 224
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	151, 228
Hin1II	CATG	2 cut(s)	188, 331
Hin6I	GCGC	2 cut(s)	149, 226
HinP1I	GCGC	2 cut(s)	149, 226
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	1 cut(s)	312
HphI	GGTGA	2 cut(s)	68, 97
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	4 cut(s)	199, 317, 364, 395
Hpy188III	TCNNGA	2 cut(s)	52, 301
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	52, 107, 118
HpyCH4III	ACNGT	4 cut(s)	15, 280, 413, 432
HpyCH4V	TGCA	1 cut(s)	408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 329, 338
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	188, 331
HspAI	GCGC	2 cut(s)	149, 226
Kzo9I	GATC	1 cut(s)	395
LmnI	GCTCC	3 cut(s)	154, 188, 237
LpnPI	CCDG	4 cut(s)	137, 242, 278, 320
Lsp1109I	GCAGC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	4 cut(s)	9, 15, 74, 274
MalI	GATC	1 cut(s)	397
MboI	GATC	1 cut(s)	395
MboII	GAAGA	1 cut(s)	67
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	2 cut(s)	159, 193
MluCI	AATT	2 cut(s)	385, 419
MmeI	TCCRAC	3 cut(s)	222, 373, 387
MnlI	CCTC	6 cut(s)	59, 90, 130, 133, 221, 245
MseI	TTAA	2 cut(s)	372, 423
MwoI	GCNNNNNNNGC	3 cut(s)	229, 329, 338
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	1 cut(s)	395
NlaIII	CATG	2 cut(s)	188, 331
NmuCI	GTSAC	3 cut(s)	9, 74, 274
NsbI	TGCGCA	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	46, 225
Psp124BI	GAGCTC	1 cut(s)	193
PspEI	GGTNACC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	193
SalI	GTCGAC	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	372, 423
SatI	GCNGC	2 cut(s)	45, 224
Sau3AI	GATC	1 cut(s)	395
Sau96I	GGNCC	1 cut(s)	46
SduI	GDGCHC	2 cut(s)	159, 193
SetI	ASST	5 cut(s)	110, 193, 234, 273, 343
SfcI	CTRYAG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	385, 419
SsiI	CCGC	2 cut(s)	44, 368
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	4 cut(s)	15, 280, 413, 432
TaqI	TCGA	2 cut(s)	282, 300
TaqII	GACCGA	1 cut(s)	276
TasI	AATT	2 cut(s)	385, 419
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	2 cut(s)	372, 423
Tru9I	TTAA	2 cut(s)	372, 423
TseFI	GTSAC	3 cut(s)	9, 74, 274
TseI	GCWGC	1 cut(s)	223
Tsp45I	GTSAC	3 cut(s)	9, 74, 274
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.