MD15G1188400.v1.1

Leucine rich repeat

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
14870452 .. 14871759
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1188400.v1.1.491

Sequence Viewer

Length: 1308 bp
ATGAAGAAGAAGACCACCACCCTCTTCCACCTCTCACTCCTCACTGCCCTTTTCCTTGCCGCGACATCACTCTTCTCTGGTGCTGCTGCTCAGGAGCACCACCACCAGCACCGCCGCAGTAGCCACATTGTCAGCCATGGACCTCTCTCCGACGAGGAAGCCCTCTACATCAAGCACCGCCAGCTCCTCTACTACCGCGATGAGTTCGGTGACCGCGGCGAGCATGTGACGGTCGACCCCTCGCTGGTCTTCGAGAACGACCGCCTCCGGAACGCTTACATAGCTCTGCAGGCGTTGAAGCAGGCCATTCTCTCCGACCCGTTCAACATCACGGGCAATTGGGTCGGATCTAATGTCTGCAAGTACACCGGAGTTTTCTGCACCAAGGCGCTTGACAACAGAACGATCCGGACTGTGGCGGGGATCGACCTCAACCACGGCGACATAGCCGGGTACTTGCCGGAGGAGCTTGGGCTGCTCACGGATCTCGCATTGTTCCACATCAACTCCAACAGGTTCTGTGGAACTGTTCCTCACAAGTTCAACCGCCTCAAGCTGCTGTTCGAGCTCGATTTGAGCAACAATCGGTTCGCCGGAAAGTTCCCTCGGGTGGTTCTCCAGCTGCCGAAGCTGAAATTCTTGGATCTGAGGTTCAACGAGTTCGAAGGGACGGTGCCAAAGGAGCTGTTCGACAAGGACTTGGACGCCATTTTCATCAACCACAACCGGTTCCGGTTCGATCTGCCTGATAACTTCGGGAATTCGCCGGTCTCCGTCATCGTCCTCGCCAACAACAAGTTCCACGGCTGCGTTCCGGCTAGTTTGGGGAACATGTCAAACCTCAACGAGATTATCCTGATGAACAATGGATTCCGGTCGTGTTTGCCGCCGGAGATTGGGATGCTGAAGAACTTGACTGTGTTTGACGTCAGCTTCAACCAGTTTCTGGGGTCGCTACCGGAGACGATTGGAGGGATGGTGAGCTTGGAGCAGCTCAATGTGGCCCACAACTTGCTGTCGGGGAAGATTCCGGCGAGTATTTGTTCGCTGCCGAGTCTGCAGAACTTCACTTACTCGTATAACTTCTTCACGGTGAGCCGCCGGCGTGTCTGGGACTGGCGGGCTTTGACGACAAGAGGAATTGCTTGCCGAATAGGCCAGCGCAGCGAACGGCAGCGCAGTGTAAGTCGTTCTTGTCGAAGCCTGTGGATTGTAGTTCTTTTAGATGTAAGCCTTTTGTTCCGTCTTTGCCTACTCCTCCTCCGCCTTCGCCTCCACTTCCTATGCCTTCACCGCCGCCTATTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

436

Amino Acids

49.5

Weight (kDa)

9.38

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 163 - 220 7.1e-07 Leucine rich repeat
LRR_14 PF23598 269 - 357 4.6e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 930
AccB1I GGYRCC 1 cut(s) 673
AccB7I CCANNNNNTGG 1 cut(s) 946
AccI GTMKAC 1 cut(s) 234
AccII CGCG 3 cut(s) 62, 198, 216
AccIII TCCGGA 2 cut(s) 267, 408
AclWI GGATC 5 cut(s) 355, 400, 431, 492, 651
AcsI RAATTY 2 cut(s) 635, 760
AcuI CTGAAG 1 cut(s) 926
AcyI GRCGYC 2 cut(s) 705, 927
AfaI GTAC 2 cut(s) 365, 455
AfiI CCNNNNNNNGG 5 cut(s) 244, 415, 610, 896, 946
AflIII ACRYGT 1 cut(s) 831
AgeI ACCGGT 1 cut(s) 726
AgsI TTSAA 5 cut(s) 298, 325, 544, 655, 937
AjuI GAANNNNNNNTTGG 2 cut(s) 782, 814
AloI GAACNNNNNNTCC 2 cut(s) 635, 667
Alw21I GWGCWC 2 cut(s) 99, 570
Alw26I GTCTC 2 cut(s) 775, 956
AlwI GGATC 5 cut(s) 355, 400, 431, 492, 651
AlwNI CAGNNNCTG 2 cut(s) 519, 946
Ama87I CYCGRG 1 cut(s) 606
Aor13HI TCCGGA 2 cut(s) 267, 408
AoxI GGCC 3 cut(s) 303, 1002, 1156
ApoI RAATTY 2 cut(s) 635, 760
AsiGI ACCGGT 1 cut(s) 726
AspLEI GCGC 3 cut(s) 391, 1164, 1179
AspS9I GGNCC 2 cut(s) 140, 1003
AsuC2I CCSGG 1 cut(s) 451
AsuHPI GGTGA 4 cut(s) 221, 991, 1105, 1283
AsuII TTCGAA 1 cut(s) 663
AvaI CYCGRG 1 cut(s) 606
AvaII GGWCC 1 cut(s) 140
BanI GGYRCC 1 cut(s) 673
BanII GRGCYC 1 cut(s) 570
BarI GAAGNNNNNNTAC 2 cut(s) 1070, 1102
BbsI GAAGAC 2 cut(s) 17, 241
Bbv12I GWGCWC 2 cut(s) 99, 570
BccI CCATC 1 cut(s) 970
BceAI ACGGC 3 cut(s) 454, 820, 1187
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BcnI CCSGG 1 cut(s) 451
BcoDI GTCTC 2 cut(s) 775, 956
BfaI CTAG 1 cut(s) 819
BfmI CTRYAG 2 cut(s) 287, 1058
BfoI RGCGCY 1 cut(s) 392
BglI GCCNNNNNGGC 1 cut(s) 1155
Bme1390I CCNGG 1 cut(s) 451
Bme18I GGWCC 1 cut(s) 140
BmeT110I CYCGRG 1 cut(s) 606
BmgT120I GGNCC 2 cut(s) 140, 1003
BmiI GGNNCC 2 cut(s) 675, 731
BmrFI CCNGG 1 cut(s) 451
BmsI GCATC 1 cut(s) 891
BpiI GAAGAC 2 cut(s) 17, 241
BpmI CTGGAG 1 cut(s) 602
Bpu10I CCTNAGC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 451
BsaHI GRCGYC 2 cut(s) 705, 927
BsaI GGTCTC 1 cut(s) 775
BsaJI CCNNGG 6 cut(s) 136, 214, 384, 436, 605, 802
BsaWI WCCGGW 7 cut(s) 267, 368, 408, 726, 732, 873, 958
BsaXI ACNNNNNCTCC 6 cut(s) 491, 521, 963, 993, 1245, 1275
Bsc4I CCNNNNNNNGG 5 cut(s) 244, 415, 610, 896, 946
Bse118I RCCGGY 3 cut(s) 726, 766, 1101
Bse1I ACTGG 2 cut(s) 940, 1121
BseAI TCCGGA 2 cut(s) 267, 408
BseDI CCNNGG 6 cut(s) 136, 214, 384, 436, 605, 802
BseGI GGATG 2 cut(s) 906, 981
BseLI CCNNNNNNNGG 5 cut(s) 244, 415, 610, 896, 946
BseMII CTCAG 2 cut(s) 104, 638
BseNI ACTGG 2 cut(s) 940, 1121
BseRI GAGGAG 5 cut(s) 29, 176, 479, 1247, 1250
BsgI GTGCAG 1 cut(s) 364
Bsh1236I CGCG 3 cut(s) 62, 198, 216
Bsh1285I CGRYCG 3 cut(s) 234, 262, 878
BshFI GGCC 3 cut(s) 305, 1004, 1158
BshNI GGYRCC 1 cut(s) 673
BshTI ACCGGT 1 cut(s) 726
BsiEI CGRYCG 3 cut(s) 234, 262, 878
BsiHKAI GWGCWC 2 cut(s) 99, 570
BsiHKCI CYCGRG 1 cut(s) 606
BslFI GGGAC 2 cut(s) 682, 1127
BslI CCNNNNNNNGG 5 cut(s) 244, 415, 610, 896, 946
BsmAI GTCTC 2 cut(s) 775, 956
BsmBI CGTCTC 1 cut(s) 956
BsmFI GGGAC 2 cut(s) 682, 1127
BsnI GGCC 3 cut(s) 305, 1004, 1158
Bso31I GGTCTC 1 cut(s) 775
BsoBI CYCGRG 1 cut(s) 606
Bsp119I TTCGAA 1 cut(s) 663
Bsp1286I GDGCHC 2 cut(s) 99, 570
Bsp13I TCCGGA 2 cut(s) 267, 408
Bsp143I GATC 6 cut(s) 347, 405, 423, 484, 643, 739
Bsp19I CCATGG 1 cut(s) 136
BspANI GGCC 3 cut(s) 305, 1004, 1158
BspCNI CTCAG 2 cut(s) 103, 639
BspEI TCCGGA 2 cut(s) 267, 408
BspFNI CGCG 3 cut(s) 62, 198, 216
BspLI GGNNCC 2 cut(s) 675, 731
BspMAI CTGCAG 2 cut(s) 291, 1062
BspPI GGATC 5 cut(s) 355, 400, 431, 492, 651
BspT104I TTCGAA 1 cut(s) 663
BspT107I GGYRCC 1 cut(s) 673
BspTNI GGTCTC 1 cut(s) 775
BsrFI RCCGGY 3 cut(s) 726, 766, 1101
BsrI ACTGG 2 cut(s) 940, 1121
BssAI RCCGGY 3 cut(s) 726, 766, 1101
BssECI CCNNGG 6 cut(s) 136, 214, 384, 436, 605, 802
BssMI GATC 6 cut(s) 347, 405, 423, 484, 643, 739
BssNI GRCGYC 2 cut(s) 705, 927
BssT1I CCWWGG 2 cut(s) 136, 384
Bst4CI ACNGT 6 cut(s) 232, 415, 529, 673, 919, 1093
Bst6I CTCTTC 2 cut(s) 29, 77
BstACI GRCGYC 2 cut(s) 705, 927
BstBI TTCGAA 1 cut(s) 663
BstC8I GCNNGC 8 cut(s) 182, 221, 291, 303, 1103, 1122, 1147, 1160
BstDEI CTNAG 2 cut(s) 90, 647
BstDSI CCRYGG 4 cut(s) 136, 214, 436, 802
BstEII GGTNACC 1 cut(s) 209
BstF5I GGATG 2 cut(s) 906, 981
BstFNI CGCG 3 cut(s) 62, 198, 216
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 3 cut(s) 391, 1164, 1179
BstKTI GATC 6 cut(s) 350, 408, 426, 487, 646, 742
BstMAI GTCTC 2 cut(s) 775, 956
BstMBI GATC 6 cut(s) 347, 405, 423, 484, 643, 739
BstMCI CGRYCG 3 cut(s) 234, 262, 878
BstNSI RCATGY 2 cut(s) 227, 835
BstPI GGTNACC 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 449
BstSFI CTRYAG 2 cut(s) 287, 1058
BstUI CGCG 3 cut(s) 62, 198, 216
BstV2I GAAGAC 2 cut(s) 17, 241
BstX2I RGATCY 3 cut(s) 347, 484, 643
BstYI RGATCY 3 cut(s) 347, 484, 643
BsuRI GGCC 3 cut(s) 305, 1004, 1158
BtgI CCRYGG 4 cut(s) 136, 214, 436, 802
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 2 cut(s) 906, 981
BtsI GCAGTG 2 cut(s) 42, 1186
BtsIMutI CAGTG 2 cut(s) 42, 1186
Cac8I GCNNGC 8 cut(s) 182, 221, 291, 303, 1103, 1122, 1147, 1160
CaiI CAGNNNCTG 2 cut(s) 519, 946
CfoI GCGC 3 cut(s) 391, 1164, 1179
Cfr10I RCCGGY 3 cut(s) 726, 766, 1101
Cfr13I GGNCC 2 cut(s) 140, 1003
Cfr42I CCGCGG 1 cut(s) 217
CseI GACGC 1 cut(s) 713
Csp6I GTAC 2 cut(s) 364, 454
CspAI ACCGGT 1 cut(s) 726
CviAII CATG 3 cut(s) 137, 224, 832
CviQI GTAC 2 cut(s) 364, 454
DdeI CTNAG 2 cut(s) 90, 647
DpnI GATC 6 cut(s) 349, 407, 425, 486, 645, 741
DpnII GATC 6 cut(s) 347, 405, 423, 484, 643, 739
Eam1104I CTCTTC 2 cut(s) 29, 77
EarI CTCTTC 2 cut(s) 29, 77
EciI GGCGGA 1 cut(s) 1253
Ecl136II GAGCTC 1 cut(s) 568
Eco130I CCWWGG 2 cut(s) 136, 384
Eco24I GRGCYC 1 cut(s) 570
Eco31I GGTCTC 1 cut(s) 775
Eco47I GGWCC 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 926
Eco88I CYCGRG 1 cut(s) 606
Eco91I GGTNACC 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 568
EcoO65I GGTNACC 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 760
EcoT14I CCWWGG 2 cut(s) 136, 384
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 2 cut(s) 136, 384
Esp3I CGTCTC 1 cut(s) 956
FaeI CATG 3 cut(s) 140, 227, 835
FaiI YATR 7 cut(s) 138, 225, 281, 446, 833, 1080, 1285
FalI AAGNNNNNCTT 2 cut(s) 1177, 1209
FaqI GGGAC 2 cut(s) 682, 1127
FatI CATG 3 cut(s) 136, 223, 831
FauI CCCGC 2 cut(s) 412, 1113
FblI GTMKAC 1 cut(s) 234
FokI GGATG 2 cut(s) 913, 988
FriOI GRGCYC 1 cut(s) 570
FspBI CTAG 1 cut(s) 819
GlaI GCGC 3 cut(s) 390, 1163, 1178
GsuI CTGGAG 1 cut(s) 602
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 3 cut(s) 305, 1004, 1158
HgaI GACGC 1 cut(s) 713
HhaI GCGC 3 cut(s) 391, 1164, 1179
Hin1I GRCGYC 2 cut(s) 705, 927
Hin1II CATG 3 cut(s) 140, 227, 835
Hin6I GCGC 3 cut(s) 389, 1162, 1177
HinP1I GCGC 3 cut(s) 389, 1162, 1177
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 3 cut(s) 870, 1027, 1054
HphI GGTGA 4 cut(s) 221, 991, 1105, 1283
Hpy166II GTNNAC 2 cut(s) 235, 366
Hpy188I TCNGA 4 cut(s) 151, 316, 347, 648
Hpy188III TCNNGA 6 cut(s) 92, 253, 268, 409, 757, 856
Hpy8I GTNNAC 2 cut(s) 235, 366
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 659, 1277, 1298
HpyCH4III ACNGT 6 cut(s) 232, 415, 529, 673, 919, 1093
HpyCH4IV ACGT 1 cut(s) 927
HpyCH4V TGCA 4 cut(s) 289, 360, 381, 1060
HpyF3I CTNAG 2 cut(s) 90, 647
HpySE526I ACGT 1 cut(s) 927
Hsp92I GRCGYC 2 cut(s) 705, 927
Hsp92II CATG 3 cut(s) 140, 227, 835
HspAI GCGC 3 cut(s) 389, 1162, 1177
Kpn2I TCCGGA 2 cut(s) 267, 408
KroI GCCGGC 1 cut(s) 1101
KroNI GCCGGC 1 cut(s) 1103
KspI CCGCGG 1 cut(s) 217
Kzo9I GATC 6 cut(s) 347, 405, 423, 484, 643, 739
LmnI GCTCC 5 cut(s) 94, 189, 466, 682, 988
LweI GCATC 1 cut(s) 891
MaeI CTAG 1 cut(s) 819
MaeII ACGT 1 cut(s) 927
MaeIII GTNAC 2 cut(s) 209, 226
MalI GATC 6 cut(s) 349, 407, 425, 486, 645, 741
MboI GATC 6 cut(s) 347, 405, 423, 484, 643, 739
MboII GAAGA 9 cut(s) 16, 16, 19, 22, 64, 241, 919, 1036, 1078
MfeI CAATTG 1 cut(s) 337
MflI RGATCY 3 cut(s) 347, 484, 643
MhlI GDGCHC 2 cut(s) 99, 570
MluCI AATT 4 cut(s) 337, 635, 760, 1140
MlyI GAGTC 1 cut(s) 1063
MmeI TCCRAC 4 cut(s) 174, 325, 339, 534
MreI CGCCGGCG 1 cut(s) 1101
MroI TCCGGA 2 cut(s) 267, 408
MroNI GCCGGC 1 cut(s) 1101
MspA1I CMGCKG 2 cut(s) 216, 622
MspR9I CCNGG 1 cut(s) 451
MunI CAATTG 1 cut(s) 337
MvnI CGCG 3 cut(s) 62, 198, 216
NaeI GCCGGC 1 cut(s) 1103
NciI CCSGG 1 cut(s) 451
NcoI CCATGG 1 cut(s) 136
NdeII GATC 6 cut(s) 347, 405, 423, 484, 643, 739
NgoMIV GCCGGC 1 cut(s) 1101
NlaIII CATG 3 cut(s) 140, 227, 835
NlaIV GGNNCC 2 cut(s) 675, 731
NmeAIII GCCGAG 1 cut(s) 1077
NmuCI GTSAC 2 cut(s) 209, 226
NspI RCATGY 2 cut(s) 227, 835
NspV TTCGAA 1 cut(s) 663
PciI ACATGT 1 cut(s) 831
PcsI WCGNNNNNNNCGW 1 cut(s) 1195
PdiI GCCGGC 1 cut(s) 1103
PfeI GAWTC 2 cut(s) 870, 1027
PflMI CCANNNNNTGG 1 cut(s) 946
PinAI ACCGGT 1 cut(s) 726
PleI GAGTC 1 cut(s) 1062
PpsI GAGTC 1 cut(s) 1062
PscI ACATGT 1 cut(s) 831
Psp124BI GAGCTC 1 cut(s) 570
PspEI GGTNACC 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 675, 731
PspPI GGNCC 2 cut(s) 140, 1003
PsrI GAACNNNNNNTAC 2 cut(s) 1055, 1087
PstI CTGCAG 2 cut(s) 291, 1062
PstNI CAGNNNCTG 2 cut(s) 519, 946
PsuI RGATCY 3 cut(s) 347, 484, 643
PvuII CAGCTG 1 cut(s) 622
RsaI GTAC 2 cut(s) 365, 455
RsaNI GTAC 2 cut(s) 364, 454
SacI GAGCTC 1 cut(s) 570
SacII CCGCGG 1 cut(s) 217
SalI GTCGAC 1 cut(s) 233
Sau3AI GATC 6 cut(s) 347, 405, 423, 484, 643, 739
Sau96I GGNCC 2 cut(s) 140, 1003
SchI GAGTC 1 cut(s) 1063
ScrFI CCNGG 1 cut(s) 451
SduI GDGCHC 2 cut(s) 99, 570
SfaNI GCATC 1 cut(s) 891
SfcI CTRYAG 2 cut(s) 287, 1058
Sfr303I CCGCGG 1 cut(s) 217
SfuI TTCGAA 1 cut(s) 663
SgrAI CRCCGGYG 1 cut(s) 1101
SgrBI CCGCGG 1 cut(s) 217
SinI GGWCC 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 4 cut(s) 337, 635, 760, 1140
SspMI CTAG 1 cut(s) 819
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 1 cut(s) 449
StyI CCWWGG 2 cut(s) 136, 384
TaaI ACNGT 6 cut(s) 232, 415, 529, 673, 919, 1093
TaiI ACGT 1 cut(s) 930
TaqI TCGA 9 cut(s) 234, 252, 426, 564, 570, 663, 690, 738, 1198
TasI AATT 4 cut(s) 337, 635, 760, 1140
TatI WGTACW 1 cut(s) 363
TauI GCSGC 6 cut(s) 62, 117, 219, 889, 1101, 1299
TfiI GAWTC 2 cut(s) 870, 1027
TscAI CASTG 2 cut(s) 49, 1186
TseFI GTSAC 2 cut(s) 209, 226
Tsp45I GTSAC 2 cut(s) 209, 226
TspDTI ATGAA 3 cut(s) 17, 703, 875
TspGWI ACGGA 3 cut(s) 497, 763, 1232
TspRI CASTG 2 cut(s) 49, 1186
Van91I CCANNNNNTGG 1 cut(s) 946
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 2 cut(s) 635, 760
XceI RCATGY 2 cut(s) 227, 835
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 1 cut(s) 819
ZraI GACGTC 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.