AT4G13340

Leucine-rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007583
Physical Location & Seq
Forward (+)
7758275 .. 7761362
3088 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13340.1

Sequence Viewer

Length: 2283 bp
ATGAAGAAGACGATTCAAATCCTCCTCTTCTTCTTCTTCCTCATCAATCTCACCAACGCTCTCTCAATCTCCTCTGACGGCGGCGTTCTCTCCGATAACGAAGTCCGTCACATTCAACGCCGTCAATTACTCGAATTCGCCGAACGAAGCGTCAAAATCACCGTTGATCCTTCTCTAAACTTCGAGAATCCGAGATTGCGAAATGCTTATATAGCTCTACAAGCTTGGAAACAAGCGATTCTCTCTGATCCAAACAATTTCACTTCGAATTGGATCGGATCCAATGTCTGTAACTACACCGGAGTTTTCTGTTCTCCGGCGCTTGATAATCGGAAGATTCGTACCGTCGCCGGAATCGATCTCAATCACGCAGATATCGCTGGTTATTTACCTGAAGAGCTTGGTTTGTTATCAGATCTTGCTTTGTTTCATGTTAATTCAAACCGGTTTTGTGGTACTGTACCACACCGGTTTAACCGGCTTAAGCTTTTATTCGAGCTTGATCTTAGTAACAACCGGTTCGCTGGGAAGTTTCCGACGGTTGTCTTGCAATTACCGTCGTTGAAGTTTTTAGATCTCCGGTTTAATGAATTTGAAGGAACTGTACCGAAAGAGCTTTTTAGTAAAGATCTTGACGCGATTTTCATAAACCATAACCGGTTCCGGTTTGAATTACCGGAGAATTTTGGTGATTCGCCGGTTTCGGTTATTGTTTTGGCGAATAACCGGTTCCATGGTTGTGTACCATCGAGCTTGGTGGAGATGAAGAATCTTAACGAGATCATCTTCATGAACAATGGTCTTAATTCTTGTTTACCGTCTGATATCGGACGGTTAAAGAACGTGACGGTGTTTGACGTCAGTTTTAATGAACTTGTTGGGCCGTTACCGGAGAGTGTTGGTGAGATGGTTTCGGTGGAGCAGCTTAATGTGGCGCATAATATGTTGTCGGGGAAGATTCCGGCGAGTATTTGTCAGTTACCGAAGCTTGAGAATTTCACTTATAGTTACAATTTCTTTACCGGAGAAGCGCCTGTGTGTTTGAGGTTGCCGGAGTTTGATGATCGGAGAAATTGTTTGCCGGGAAGACCTGCTCAGAGGTCTCCAGGGCAATGTAAAGCGTTTTTGTCTCGTCCGCCGGTAAATTGTGGATCGTTTAGTTGTGGCCGTTCTGTGTCGCCTCGTCCTCCGGTTGTAACGCCGTTACCACCGCCTTCTTTGCCATCTCCGCCTCCACCTGCGCCAATTTTCTCAACACCTCCTACGCTTACTTCCCCACCACCTCCGTCACCGCCTCCGCCTGTTTATTCTCCCCCTCCTCCACCGCCACCACCTCCTCCGGTATATTCTCCTCCACCACCACCGCCCCCACCGCCTCCTCCGCCAGTATATTCTCCTCCACCACCACCACCGCCCCCACCGCCTCCTCCGCCAGTATATTCTCCGCCACCACCATCGCCGCCTCCACCGCCTCCGCCAGTCTACTCTCCCCCACCACCACCACCGCCTCCACCTCCTCCGCCGGTATACTCTCCTCCGCCTCCGCCAGTATACTCTTCTCCACCTCCTCCGCCTTCTCCAGCACCAACTCCAGTTTATTGCACCCGTCCACCACCCCCACCACCTCACTCGCCGCCACCACCACAATTTTCTCCTCCACCACCTGAACCTTACTACTACAGCTCACCACCACCACCGCATTCTTCACCGCCGCCGCATTCACCTCCACCACCACATTCACCTCCCCCACCGATTTATCCATATCTGTCTCCACCGCCCCCACCAACACCAGTTTCTTCTCCACCACCCACTCCGGTCTATTCCCCTCCTCCCCCACCTCCTTGTATAGAACCACCACCACCTCCACCGTGTATAGAGTATTCACCTCCTCCTCCTCCACCAGTCGTTCATTATAGCTCTCCGCCTCCACCGCCAGTCTACTACAGCTCTCCGCCACCTCCACCAGTCTATTACAGCTCTCCACCTCCGCCACCGCCGGTTCATTACAGCTCTCCGCCACCACCAGAAGTCCATTACCATTCTCCGCCTCCATCTCCAGTACACTACAGCTCTCCACCACCGCCACCATCAGCTCCATGTGAAGAATCTCCTCCACCAGCACCGGTAGTTCACCACAGTCCACCACCGCCCATGGTTCACCACAGCCCACCACCTCCAGTGATCCACCAAAGCCCACCACCGCCATCTCCTGAATATGAAGGACCACTACCACCGGTCATCGGCGTATCATACGCATCTCCTCCACCACCGCCGTTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005198 GO:0005199 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8

Protein Analysis

760

Amino Acids

82.25

Weight (kDa)

6.49

Isoelectric Point (pI)

104.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 72 - 105 5.6e-06 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1246
AatII GACGTC 1 cut(s) 861
Acc36I ACCTGC 2 cut(s) 1099, 1246
AccI GTMKAC 4 cut(s) 1482, 1527, 1551, 1938
AccII CGCG 1 cut(s) 638
AclWI GGATC 7 cut(s) 161, 242, 273, 281, 286, 1159, 2176
AcoI YGGCCR 1 cut(s) 1165
AcsI RAATTY 4 cut(s) 134, 590, 682, 994
AcuI CTGAAG 1 cut(s) 414
AcyI GRCGYC 1 cut(s) 858
AfaI GTAC 6 cut(s) 343, 457, 462, 606, 744, 2061
AfiI CCNNNNNNNGG 1 cut(s) 2240
AflII CTTAAG 1 cut(s) 482
AgeI ACCGGT 7 cut(s) 444, 468, 516, 657, 726, 2122, 2233
AgsI TTSAA 6 cut(s) 17, 116, 441, 565, 596, 671
AjnI CCWGG 1 cut(s) 1105
AjuI GAANNNNNNNTTGG 2 cut(s) 1777, 1809
Alw26I GTCTC 3 cut(s) 1107, 1134, 1773
AlwI GGATC 7 cut(s) 161, 242, 273, 281, 286, 1159, 2176
AoxI GGCC 2 cut(s) 881, 1165
ApeKI GCWGC 1 cut(s) 922
ApoI RAATTY 4 cut(s) 134, 590, 682, 994
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AsiGI ACCGGT 7 cut(s) 444, 468, 516, 657, 726, 2122, 2233
AspLEI GCGC 4 cut(s) 322, 937, 1033, 1243
AspS9I GGNCC 2 cut(s) 881, 2222
AsuC2I CCSGG 1 cut(s) 1083
AsuII TTCGAA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 2222
BamHI GGATCC 1 cut(s) 278
BarI GAAGNNNNNNTAC 4 cut(s) 588, 620, 2211, 2243
BbsI GAAGAC 2 cut(s) 14, 1093
BbvI GCAGC 1 cut(s) 934
BccI CCATC 7 cut(s) 754, 901, 1231, 1462, 2059, 2095, 2212
BceAI ACGGC 6 cut(s) 94, 105, 868, 1152, 1186, 2257
BciT130I CCWGG 1 cut(s) 1107
BcnI CCSGG 1 cut(s) 1083
BcoDI GTCTC 3 cut(s) 1107, 1134, 1773
BfmI CTRYAG 3 cut(s) 1678, 1942, 2065
BfoI RGCGCY 2 cut(s) 323, 1034
BfrI CTTAAG 1 cut(s) 482
BfuAI ACCTGC 2 cut(s) 1099, 1246
BglII AGATCT 3 cut(s) 415, 574, 628
BisI GCNGC 6 cut(s) 82, 923, 1460, 1634, 1712, 1715
BlsI GCNGC 6 cut(s) 83, 924, 1461, 1635, 1713, 1716
Bme1390I CCNGG 2 cut(s) 1083, 1107
Bme18I GGWCC 1 cut(s) 2222
BmgT120I GGNCC 2 cut(s) 881, 2222
BmiI GGNNCC 3 cut(s) 280, 662, 731
BmrFI CCNGG 2 cut(s) 1083, 1107
BmsI GCATC 1 cut(s) 2264
BoxI GACNNNNGTC 1 cut(s) 542
BpiI GAAGAC 2 cut(s) 14, 1093
BpmI CTGGAG 5 cut(s) 1089, 1563, 1575, 2040, 2160
Bpu14I TTCGAA 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 1010
BpuMI CCSGG 1 cut(s) 1083
Bsa29I ATCGAT 1 cut(s) 357
BsaBI GATNNNNATC 2 cut(s) 17, 363
BsaHI GRCGYC 1 cut(s) 858
BsaI GGTCTC 1 cut(s) 1107
BsaJI CCNNGG 3 cut(s) 733, 1106, 2151
BsaXI ACNNNNNCTCC 2 cut(s) 1060, 1090
Bsc4I CCNNNNNNNGG 1 cut(s) 2240
Bse3DI GCAATG 1 cut(s) 1118
Bse8I GATNNNNATC 2 cut(s) 17, 363
BseBI CCWGG 1 cut(s) 1107
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 3 cut(s) 733, 1106, 2151
BseJI GATNNNNATC 2 cut(s) 17, 363
BseLI CCNNNNNNNGG 1 cut(s) 2240
BseMI GCAATG 1 cut(s) 1118
BseMII CTCAG 1 cut(s) 1109
BseXI GCAGC 1 cut(s) 934
BseYI CCCAGC 1 cut(s) 524
Bsh1236I CGCG 1 cut(s) 638
BshFI GGCC 2 cut(s) 883, 1167
BshTI ACCGGT 7 cut(s) 444, 468, 516, 657, 726, 2122, 2233
BshVI ATCGAT 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 2240
BsmAI GTCTC 3 cut(s) 1107, 1134, 1773
BsmI GAATGC 2 cut(s) 1699, 1717
BsnI GGCC 2 cut(s) 883, 1167
Bso31I GGTCTC 1 cut(s) 1107
Bsp119I TTCGAA 1 cut(s) 266
Bsp19I CCATGG 2 cut(s) 733, 2151
BspANI GGCC 2 cut(s) 883, 1167
BspCNI CTCAG 1 cut(s) 1108
BspDI ATCGAT 1 cut(s) 357
BspFNI CGCG 1 cut(s) 638
BspHI TCATGA 1 cut(s) 789
BspLI GGNNCC 3 cut(s) 280, 662, 731
BspMI ACCTGC 2 cut(s) 1099, 1246
BspPI GGATC 7 cut(s) 161, 242, 273, 281, 286, 1159, 2176
BspQI GCTCTTC 1 cut(s) 390
BspT104I TTCGAA 1 cut(s) 266
BspTI CTTAAG 1 cut(s) 482
BspTNI GGTCTC 1 cut(s) 1107
BsrDI GCAATG 1 cut(s) 1118
BssECI CCNNGG 3 cut(s) 733, 1106, 2151
BssNAI GTATAC 2 cut(s) 1528, 1552
BssNI GRCGYC 1 cut(s) 858
BssT1I CCWWGG 2 cut(s) 733, 2151
Bst1107I GTATAC 2 cut(s) 1528, 1552
Bst2UI CCWGG 1 cut(s) 1107
Bst6I CTCTTC 3 cut(s) 32, 390, 1561
BstACI GRCGYC 1 cut(s) 858
BstAFI CTTAAG 1 cut(s) 482
BstBI TTCGAA 1 cut(s) 266
BstDEI CTNAG 2 cut(s) 506, 1095
BstDSI CCRYGG 2 cut(s) 733, 2151
BstFNI CGCG 1 cut(s) 638
BstH2I RGCGCY 2 cut(s) 323, 1034
BstHHI GCGC 4 cut(s) 322, 937, 1033, 1243
BstMAI GTCTC 3 cut(s) 1107, 1134, 1773
BstNI CCWGG 1 cut(s) 1107
BstPAI GACNNNNGTC 1 cut(s) 542
BstSCI CCNGG 2 cut(s) 1081, 1105
BstSFI CTRYAG 3 cut(s) 1678, 1942, 2065
BstUI CGCG 1 cut(s) 638
BstV1I GCAGC 1 cut(s) 934
BstV2I GAAGAC 2 cut(s) 14, 1093
BstX2I RGATCY 4 cut(s) 278, 415, 574, 628
BstYI RGATCY 4 cut(s) 278, 415, 574, 628
BstZ17I GTATAC 2 cut(s) 1528, 1552
Bsu15I ATCGAT 1 cut(s) 357
BsuRI GGCC 2 cut(s) 883, 1167
BsuTUI ATCGAT 1 cut(s) 357
BtgI CCRYGG 2 cut(s) 733, 2151
BtgZI GCGATG 1 cut(s) 1440
BtsIMutI CAGTG 1 cut(s) 2184
BveI ACCTGC 2 cut(s) 1099, 1246
CciI TCATGA 1 cut(s) 789
CfoI GCGC 4 cut(s) 322, 937, 1033, 1243
Cfr13I GGNCC 2 cut(s) 881, 2222
ClaI ATCGAT 1 cut(s) 357
CseI GACGC 2 cut(s) 139, 644
Csp6I GTAC 6 cut(s) 342, 456, 461, 605, 743, 2060
CspAI ACCGGT 7 cut(s) 444, 468, 516, 657, 726, 2122, 2233
CviAII CATG 5 cut(s) 431, 734, 790, 2097, 2152
CviQI GTAC 6 cut(s) 342, 456, 461, 605, 743, 2060
DdeI CTNAG 2 cut(s) 506, 1095
EaeI YGGCCR 1 cut(s) 1165
Eam1104I CTCTTC 3 cut(s) 32, 390, 1561
EarI CTCTTC 3 cut(s) 32, 390, 1561
Eco130I CCWWGG 2 cut(s) 733, 2151
Eco31I GGTCTC 1 cut(s) 1107
Eco32I GATATC 2 cut(s) 376, 826
Eco47I GGWCC 1 cut(s) 2222
Eco57I CTGAAG 1 cut(s) 414
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 1105
EcoRV GATATC 2 cut(s) 376, 826
EcoT14I CCWWGG 2 cut(s) 733, 2151
ErhI CCWWGG 2 cut(s) 733, 2151
FaeI CATG 5 cut(s) 434, 737, 793, 2100, 2155
FatI CATG 5 cut(s) 430, 733, 789, 2096, 2151
FblI GTMKAC 4 cut(s) 1482, 1527, 1551, 1938
Fnu4HI GCNGC 6 cut(s) 82, 923, 1460, 1634, 1712, 1715
Fsp4HI GCNGC 6 cut(s) 82, 923, 1460, 1634, 1712, 1715
GlaI GCGC 4 cut(s) 321, 936, 1032, 1242
GluI GCNGC 6 cut(s) 82, 923, 1460, 1634, 1712, 1715
GsaI CCCAGC 1 cut(s) 528
GsuI CTGGAG 5 cut(s) 1089, 1563, 1575, 2040, 2160
HaeII RGCGCY 2 cut(s) 323, 1034
HaeIII GGCC 2 cut(s) 883, 1167
HgaI GACGC 2 cut(s) 139, 644
HhaI GCGC 4 cut(s) 322, 937, 1033, 1243
Hin1I GRCGYC 1 cut(s) 858
Hin1II CATG 5 cut(s) 434, 737, 793, 2100, 2155
Hin6I GCGC 4 cut(s) 320, 935, 1031, 1241
HinP1I GCGC 4 cut(s) 320, 935, 1031, 1241
HindIII AAGCTT 3 cut(s) 222, 485, 986
HinfI GANTC 9 cut(s) 13, 187, 238, 337, 354, 692, 769, 958, 2105
Hpy188III TCNNGA 4 cut(s) 184, 632, 790, 2210
Hpy99I CGWCG 3 cut(s) 350, 541, 562
HpyAV CCTTC 5 cut(s) 180, 590, 1224, 1584, 2213
HpyCH4IV ACGT 2 cut(s) 843, 858
HpyCH4V TGCA 2 cut(s) 550, 1602
HpyF3I CTNAG 2 cut(s) 506, 1095
HpySE526I ACGT 2 cut(s) 843, 858
Hsp92I GRCGYC 1 cut(s) 858
Hsp92II CATG 5 cut(s) 434, 737, 793, 2100, 2155
HspAI GCGC 4 cut(s) 320, 935, 1031, 1241
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 2 cut(s) 919, 2098
Lsp1109I GCAGC 1 cut(s) 934
LweI GCATC 1 cut(s) 2264
MaeII ACGT 2 cut(s) 843, 858
MflI RGATCY 4 cut(s) 278, 415, 574, 628
MmeI TCCRAC 1 cut(s) 560
MseI TTAA 9 cut(s) 435, 474, 483, 585, 774, 804, 836, 867, 927
MslI CAYNNNNRTG 2 cut(s) 738, 788
MspCI CTTAAG 1 cut(s) 482
MspR9I CCNGG 2 cut(s) 1083, 1107
Mva1269I GAATGC 2 cut(s) 1699, 1717
MvaI CCWGG 1 cut(s) 1107
MvnI CGCG 1 cut(s) 638
NciI CCSGG 1 cut(s) 1083
NcoI CCATGG 2 cut(s) 733, 2151
NlaIII CATG 5 cut(s) 434, 737, 793, 2100, 2155
NlaIV GGNNCC 3 cut(s) 280, 662, 731
NmuCI GTSAC 3 cut(s) 107, 844, 1287
NspV TTCGAA 1 cut(s) 266
PagI TCATGA 1 cut(s) 789
PaqCI CACCTGC 1 cut(s) 1246
PciSI GCTCTTC 1 cut(s) 390
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 337, 354
PctI GAATGC 2 cut(s) 1699, 1717
PfeI GAWTC 9 cut(s) 13, 187, 238, 337, 354, 692, 769, 958, 2105
PinAI ACCGGT 7 cut(s) 444, 468, 516, 657, 726, 2122, 2233
PkrI GCNGC 6 cut(s) 83, 924, 1461, 1635, 1713, 1716
PshAI GACNNNNGTC 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 1105
PspFI CCCAGC 1 cut(s) 524
PspGI CCWGG 1 cut(s) 1105
PspN4I GGNNCC 3 cut(s) 280, 662, 731
PspPI GGNCC 2 cut(s) 881, 2222
PsuI RGATCY 4 cut(s) 278, 415, 574, 628
RsaI GTAC 6 cut(s) 343, 457, 462, 606, 744, 2061
RsaNI GTAC 6 cut(s) 342, 456, 461, 605, 743, 2060
RseI CAYNNNNRTG 2 cut(s) 738, 788
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 9 cut(s) 435, 474, 483, 585, 774, 804, 836, 867, 927
SatI GCNGC 6 cut(s) 82, 923, 1460, 1634, 1712, 1715
Sau96I GGNCC 2 cut(s) 881, 2222
ScrFI CCNGG 2 cut(s) 1083, 1107
SfaNI GCATC 1 cut(s) 2264
SfcI CTRYAG 3 cut(s) 1678, 1942, 2065
SfuI TTCGAA 1 cut(s) 266
SinI GGWCC 1 cut(s) 2222
SmiMI CAYNNNNRTG 2 cut(s) 738, 788
SmlI CTYRAG 2 cut(s) 482, 989
SmoI CTYRAG 2 cut(s) 482, 989
StyD4I CCNGG 2 cut(s) 1081, 1105
StyI CCWWGG 2 cut(s) 733, 2151
TaiI ACGT 2 cut(s) 846, 861
TaqI TCGA 6 cut(s) 132, 183, 266, 357, 495, 749
TatI WGTACW 1 cut(s) 2059
TauI GCSGC 5 cut(s) 84, 1462, 1636, 1714, 1717
TfiI GAWTC 9 cut(s) 13, 187, 238, 337, 354, 692, 769, 958, 2105
Tru1I TTAA 9 cut(s) 435, 474, 483, 585, 774, 804, 836, 867, 927
Tru9I TTAA 9 cut(s) 435, 474, 483, 585, 774, 804, 836, 867, 927
TscAI CASTG 1 cut(s) 2184
TseFI GTSAC 3 cut(s) 107, 844, 1287
TseI GCWGC 1 cut(s) 922
Tsp45I GTSAC 3 cut(s) 107, 844, 1287
TspGWI ACGGA 2 cut(s) 95, 1275
TspRI CASTG 1 cut(s) 2184
Vha464I CTTAAG 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 2222
XapI RAATTY 4 cut(s) 134, 590, 682, 994
XmiI GTMKAC 4 cut(s) 1482, 1527, 1551, 1938
ZraI GACGTC 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.