Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8180576.1

Orthogroup ID

OG0007583

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 668

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8180576.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 667 bp

atgctgaagaacttgacggtgttcgacgtcagctacaatcagttcttgggttcgctgccggacacaattggagggatggtgagccttgagcagctcaatgtggctcataacttgctgtctgggtcgattccgccggctatttgcacgttgccgaggctggagaacttcacttactcttataacttcttcaccggcgagcctccggtgtgtctggccttgcctagtttcgatgacaagcggaattgcttgccgaataggccgtcacagaggtcggcggcgcaatgtaagtcgttcttgtctaagcctgtgaattgcaattcttttggttgtaagcctttcactccttcacctacaccctcaattcctgttccttcacctccggttgtgactccctcgccgccggtctttgtaccccaatcaccaccacctccgccctcacctcctcccccagtttcctcacccccgcctcctccgccgtctccgccaccaccagttttctcaccaccgccgccaccgccaccgccaccgtcacctccacccccagttttctcaccaccgcctccaccagtttactctccaccaccgcctccaccctcacctcctcccccagtttactcaccacctccaccaccaccctcacctccgccgccagtttacttaccaccac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005199 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

222

Amino Acids

23.32

Weight (kDa)

8.23

Isoelectric Point (pI)

117.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24480 AT4G13340
fragaria_vesca	FvH4_1g05180 FvH4_1g05180 FvH4_1g05180 FvH4_1g05180
malus_domestica	MD09G1216000.v1.1 MD15G1188400.v1.1
prunus_persica	Prupe.5G056300_v2.0.a1 Prupe.7G228100_v2.0.a1
pyrus_communis	pycom02g04230 pycom15g16890
rosa_chinensis	RchiOBHm_Chr2g0090891
rosa_laevigata	RLG00000016154
rosa_multiflora	Rmu_co8180576.1_g000001 Rmu_sc0000792.1_g000014 Rmu_sc0014837.1_g000001
rosa_roxburghii	Rroxscaffold_2G00150760
rosa_rugosa	Rorug02G0010800
rosa_samantha	Rh2AG057100 Rh2BG055600 Rh2CG057900 Rh2DG056500
rosa_wichuraiana	Rw2G005230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AatII	GACGTC	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	411
AluBI	AGCT	2 cut(s)	33, 94
AluI	AGCT	2 cut(s)	33, 94
Alw26I	GTCTC	1 cut(s)	483
AoxI	GGCC	2 cut(s)	213, 257
ApeKI	GCWGC	2 cut(s)	55, 91
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspLEI	GCGC	1 cut(s)	280
BbvI	GCAGC	2 cut(s)	42, 103
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	244, 460
BcoDI	GTCTC	1 cut(s)	483
BfaI	CTAG	1 cut(s)	222
BglI	GCCNNNNNGGC	1 cut(s)	256
BisI	GCNGC	6 cut(s)	56, 92, 276, 398, 509, 647
BlsI	GCNGC	6 cut(s)	57, 93, 277, 399, 510, 648
BmrI	ACTGGG	3 cut(s)	443, 536, 602
BmuI	ACTGGG	3 cut(s)	443, 536, 602
BpmI	CTGGAG	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	152
BsaWI	WCCGGW	2 cut(s)	202, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bse118I	RCCGGY	3 cut(s)	133, 191, 400
Bse1I	ACTGG	6 cut(s)	449, 491, 542, 566, 608, 650
Bse3DI	GCAATG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	287
BseNI	ACTGG	6 cut(s)	449, 491, 542, 566, 608, 650
BseRI	GAGGAG	3 cut(s)	432, 459, 591
BseXI	GCAGC	2 cut(s)	42, 103
BshFI	GGCC	2 cut(s)	215, 259
BsiSI	CCGG	6 cut(s)	59, 134, 192, 203, 380, 401
BsmAI	GTCTC	1 cut(s)	483
BsmBI	CGTCTC	1 cut(s)	483
BsnI	GGCC	2 cut(s)	215, 259
BspANI	GGCC	2 cut(s)	215, 259
BsrDI	GCAATG	1 cut(s)	287
BsrFI	RCCGGY	3 cut(s)	133, 191, 400
BsrI	ACTGG	6 cut(s)	449, 491, 542, 566, 608, 650
BssAI	RCCGGY	3 cut(s)	133, 191, 400
BssECI	CCNNGG	1 cut(s)	152
BssNI	GRCGYC	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	19, 528
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	135, 197, 248
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	280
BstMAI	GTCTC	1 cut(s)	483
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 472, 481, 514
BstV1I	GCAGC	2 cut(s)	42, 103
BsuRI	GGCC	2 cut(s)	215, 259
BtsCI	GGATG	1 cut(s)	81
Cac8I	GCNNGC	3 cut(s)	135, 197, 248
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	3 cut(s)	133, 191, 400
Csp6I	GTAC	1 cut(s)	410
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	1 cut(s)	300
EciI	GGCGGA	5 cut(s)	120, 420, 462, 471, 633
Eco57I	CTGAAG	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	483
FaiI	YATR	2 cut(s)	108, 180
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FauI	CCCGC	1 cut(s)	471
Fnu4HI	GCNGC	6 cut(s)	56, 92, 276, 398, 509, 647
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	6 cut(s)	56, 92, 276, 398, 509, 647
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	6 cut(s)	56, 92, 276, 398, 509, 647
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	215, 259
HapII	CCGG	6 cut(s)	59, 134, 192, 203, 380, 401
HhaI	GCGC	1 cut(s)	280
Hin1I	GRCGYC	1 cut(s)	27
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	2 cut(s)	127, 388
HpaII	CCGG	6 cut(s)	59, 134, 192, 203, 380, 401
Hpy166II	GTNNAC	3 cut(s)	571, 613, 655
Hpy8I	GTNNAC	3 cut(s)	571, 613, 655
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	354, 381
HpyCH4III	ACNGT	2 cut(s)	19, 528
HpyCH4IV	ACGT	2 cut(s)	27, 146
HpyCH4V	TGCA	2 cut(s)	144, 315
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 472, 481, 514
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	2 cut(s)	27, 146
Hsp92I	GRCGYC	1 cut(s)	27
HspAI	GCGC	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Lsp1109I	GCAGC	2 cut(s)	42, 103
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	2 cut(s)	27, 146
MaeIII	GTNAC	3 cut(s)	261, 385, 528
MboII	GAAGA	2 cut(s)	19, 178
MfeI	CAATTG	1 cut(s)	66
MluCI	AATT	5 cut(s)	66, 241, 310, 316, 360
MlyI	GAGTC	1 cut(s)	382
MroNI	GCCGGC	1 cut(s)	133
MspI	CCGG	6 cut(s)	59, 134, 192, 203, 380, 401
MunI	CAATTG	1 cut(s)	66
MwoI	GCNNNNNNNGC	4 cut(s)	256, 472, 481, 514
NaeI	GCCGGC	1 cut(s)	135
NgoMIV	GCCGGC	1 cut(s)	133
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	3 cut(s)	261, 385, 528
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	6 cut(s)	57, 93, 277, 399, 510, 648
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	180
PsrI	GAACNNNNNNTAC	2 cut(s)	155, 187
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SatI	GCNGC	6 cut(s)	56, 92, 276, 398, 509, 647
SchI	GAGTC	1 cut(s)	382
SgrAI	CRCCGGYG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	5 cut(s)	66, 241, 310, 316, 360
SspMI	CTAG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	19, 528
TaiI	ACGT	2 cut(s)	30, 149
TaqI	TCGA	3 cut(s)	24, 125, 228
TasI	AATT	5 cut(s)	66, 241, 310, 316, 360
TauI	GCSGC	4 cut(s)	278, 400, 511, 649
TfiI	GAWTC	1 cut(s)	127
TseFI	GTSAC	3 cut(s)	261, 385, 528
TseI	GCWGC	2 cut(s)	55, 91
Tsp45I	GTSAC	3 cut(s)	261, 385, 528
XspI	CTAG	1 cut(s)	222
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.