Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008037

Physical Location & Seq

Genomic Coordinates Reverse (-)

8934408 .. 8936298

Gene Structure 1891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24515.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCTCAAGCAGCGAGATTAAGCCTGAGAATGCAGAAAGAGCTAAAGCTTCTCCTCTCCGATCCACCTCACGGCGCTTCGTTTCCACATCTCTCTTCCGCCGCCAATGGCTCCGGCGATTTCTCCACTTTCTCCACCATCGATGCTCAAATCGAAGGTCCTGAAGATACTGTATATGCTAATGGAATCTTCAATTTGAAGATTCAAATCCCTGAGAGATATCCATTTCAGCCACCAATTGTGTCGTTCGCTACACCGATTTATCACCCAAACATCGATAACAGTGGCCGGATTTGCCTTGACATTCTAAATCTCCCTCCCAAGGGAGCTTGGCAACCATCGTTGAATATCTCGACAGTTTTGACGAGTATGAGATTGTTGCTTAGTGAACCAAATCCTGATGATGGATTGATGTGTGAAGTAAGCAGGGAGTATAAATACAATAGACAAACTTTTGATTATAAGGCACGAGAGATGACTGAGAAGTATGCTAAGGTTAAAGCTGATGGATGCAGCACCAGCTTACAAATTAAGAATCATGGAGATGAGAAGTCTGGTGAAAGTGGAAATAGTGTTAAGCTTAAGTTGACAGTGGAATCTTCTTTAAGCATAGCACATACAGTGAAACGTGAGACTGCAGGGAGAGATGAACAAGAGGATGGCAATGGGAAAAGAAAAGCAGTGGTTGGTTTTGGCGAGGGGAATTCGTTTGGAAACGATGGGATTAAAAGGAGTAGGAAGAAGTTATCTCTTGCATTGCCTTCTCAATCTCAAAAGAAAGACTTGTGTGGTGAAGAAGAGCTCACACGTGGTGTTTCAGCTGCTTGCAAAGAAAACAAAAAACCAAATTTGAATGGAAAGAAGCTTTCTCTGGGGCTGAAGCAGCCATGTAATGATACTTTGGCGAGTTTTCGAACTTCTGCTGCGAAGAGTGACAACAATAGACTAAGCCGAAAACTGTCCCTGAGATCACCACTTGGAGAGTTGAATGAAGTTAGCAAACCTGAGGTACTTGCGCAAACTGATATGAAACTGGAGATGAATCAAAATGAAGATGCAAGAAGTTTGCGAGGTGAGTTTGAGAATTCGGTATTGGAAGAAACATCAATGGCTGAATCCATTGTTGTTCTAGACAGTGATGATAGTGGACAAGAAGAAGAAGAAAGAGTCTCTTCTTCGAGGTCAAGATTATCACTGGCAAAGAGGAGAGTCCTCAAATGTAGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

UQ_con

Protein Analysis

409

Amino Acids

45.08

Weight (kDa)

8.33

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	68 - 184	2.6e-37	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24515 AT3G24515 AT3G24515 AT3G24515
fragaria_vesca	FvH4_1g04830 FvH4_1g04830 FvH4_4g32890
malus_domestica	MD08G1128600.v1.1 MD14G1109900.v1.1 MD15G1186000.v1.1
prunus_persica	Prupe.7G230900_v2.0.a1
pyrus_communis	pycom15g16670
rosa_chinensis	RchiOBHm_Chr2g0090471
rosa_laevigata	RLG00000016116
rosa_multiflora	Rmu_sc0004514.1_g000022 Rmu_sc0014034.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151110
rosa_rugosa	Rorug02G0008200 Rorug02G0008300
rosa_samantha	Rh2AG053700 Rh2BG053200 Rh2CG055300 Rh2DG053900
rosa_wichuraiana	Rw2G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
Acc16I	TGCGCA	1 cut(s)	1017
AccI	GTMKAC	1 cut(s)	1222
AciI	CCGC	2 cut(s)	99, 102
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	3 cut(s)	703, 847, 1084
AcuI	CTGAAG	2 cut(s)	183, 899
AcvI	CACGTG	1 cut(s)	809
AdeI	CACNNNGTG	1 cut(s)	812
AfaI	GTAC	1 cut(s)	1011
AfiI	CCNNNNNNNGG	4 cut(s)	71, 322, 323, 404
AflII	CTTAAG	1 cut(s)	581
AflIII	ACRYGT	1 cut(s)	806
AgsI	TTSAA	6 cut(s)	193, 199, 206, 346, 853, 988
AjuI	GAANNNNNNNTTGG	2 cut(s)	1076, 1108
AluBI	AGCT	9 cut(s)	43, 49, 329, 503, 522, 580, 802, 821, 865
AluI	AGCT	9 cut(s)	43, 49, 329, 503, 522, 580, 802, 821, 865
Alw21I	GWGCWC	1 cut(s)	804
Alw26I	GTCTC	2 cut(s)	626, 1174
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	5 cut(s)	11, 513, 821, 883, 923
ApoI	RAATTY	3 cut(s)	703, 847, 1084
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
AspLEI	GCGC	2 cut(s)	77, 1018
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	5 cut(s)	257, 569, 803, 963, 1085
AsuII	TTCGAA	1 cut(s)	913
AvaII	GGWCC	1 cut(s)	158
AxyI	CCTNAGG	1 cut(s)	1005
BanII	GRGCYC	1 cut(s)	804
BauI	CACGAG	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	809
Bbv12I	GWGCWC	1 cut(s)	804
BbvI	GCAGC	5 cut(s)	23, 525, 808, 895, 910
BccI	CCATC	6 cut(s)	146, 346, 398, 500, 653, 713
BceAI	ACGGC	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	626, 1174
BfaI	CTAG	1 cut(s)	1130
BfmI	CTRYAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	78
BfrI	CTTAAG	1 cut(s)	581
BisI	GCNGC	6 cut(s)	12, 102, 514, 822, 884, 924
BlsI	GCNGC	6 cut(s)	13, 103, 515, 823, 885, 925
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	112
BmsI	GCATC	3 cut(s)	133, 500, 1045
BpmI	CTGGAG	1 cut(s)	1055
Bpu10I	CCTNAGC	1 cut(s)	492
Bpu14I	TTCGAA	1 cut(s)	913
Bsa29I	ATCGAT	2 cut(s)	141, 276
BsaAI	YACGTR	1 cut(s)	809
BsaBI	GATNNNNATC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 322, 323, 404
Bse1I	ACTGG	2 cut(s)	1038, 1200
Bse21I	CCTNAGG	1 cut(s)	1005
Bse3DI	GCAATG	2 cut(s)	670, 755
Bse8I	GATNNNNATC	1 cut(s)	206
BseCI	ATCGAT	2 cut(s)	141, 276
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	515, 664
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	4 cut(s)	71, 322, 323, 404
BseMI	GCAATG	2 cut(s)	670, 755
BseMII	CTCAG	5 cut(s)	17, 204, 471, 956, 996
BseNI	ACTGG	2 cut(s)	1038, 1200
BseRI	GAGGAG	2 cut(s)	44, 1219
BseXI	GCAGC	5 cut(s)	23, 525, 808, 895, 910
BshFI	GGCC	1 cut(s)	288
BshVI	ATCGAT	2 cut(s)	141, 276
BsiHKAI	GWGCWC	1 cut(s)	804
BsiSI	CCGG	2 cut(s)	114, 289
BslFI	GGGAC	1 cut(s)	946
BslI	CCNNNNNNNGG	4 cut(s)	71, 322, 323, 404
BsmAI	GTCTC	2 cut(s)	626, 1174
BsmFI	GGGAC	1 cut(s)	946
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	288
Bsp119I	TTCGAA	1 cut(s)	913
Bsp1286I	GDGCHC	1 cut(s)	804
Bsp143I	GATC	2 cut(s)	61, 968
BspACI	CCGC	2 cut(s)	99, 102
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	5 cut(s)	18, 205, 472, 957, 997
BspDI	ATCGAT	2 cut(s)	141, 276
BspLI	GGNNCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	792
BspT104I	TTCGAA	1 cut(s)	913
BspTI	CTTAAG	1 cut(s)	581
BsrDI	GCAATG	2 cut(s)	670, 755
BsrI	ACTGG	2 cut(s)	1038, 1200
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	61, 968
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	468
Bst4CI	ACNGT	7 cut(s)	172, 284, 358, 592, 622, 960, 1136
Bst6I	CTCTTC	4 cut(s)	100, 792, 923, 1177
BstAFI	CTTAAG	1 cut(s)	581
BstBAI	YACGTR	1 cut(s)	809
BstBI	TTCGAA	1 cut(s)	913
BstC8I	GCNNGC	1 cut(s)	826
BstDEI	CTNAG	8 cut(s)	26, 213, 383, 480, 492, 947, 965, 1005
BstF5I	GGATG	2 cut(s)	515, 664
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	77, 1018
BstKTI	GATC	2 cut(s)	64, 971
BstMAI	GTCTC	2 cut(s)	626, 1174
BstMBI	GATC	2 cut(s)	61, 968
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 40, 294, 519, 883
BstSFI	CTRYAG	1 cut(s)	636
BstV1I	GCAGC	5 cut(s)	23, 525, 808, 895, 910
Bsu15I	ATCGAT	2 cut(s)	141, 276
Bsu36I	CCTNAGG	1 cut(s)	1005
BsuRI	GGCC	1 cut(s)	288
BsuTUI	ATCGAT	2 cut(s)	141, 276
BtsCI	GGATG	2 cut(s)	515, 664
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	6 cut(s)	289, 597, 627, 687, 1141, 1193
Cac8I	GCNNGC	1 cut(s)	826
CfoI	GCGC	2 cut(s)	77, 1018
Cfr13I	GGNCC	1 cut(s)	158
ClaI	ATCGAT	2 cut(s)	141, 276
Csp6I	GTAC	1 cut(s)	1010
CviAII	CATG	2 cut(s)	539, 888
CviQI	GTAC	1 cut(s)	1010
DdeI	CTNAG	8 cut(s)	26, 213, 383, 480, 492, 947, 965, 1005
DpnI	GATC	2 cut(s)	63, 970
DpnII	GATC	2 cut(s)	61, 968
DraIII	CACNNNGTG	1 cut(s)	812
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	4 cut(s)	100, 792, 923, 1177
EarI	CTCTTC	4 cut(s)	100, 792, 923, 1177
EciI	GGCGGA	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	802
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	804
Eco32I	GATATC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	802
Eco57I	CTGAAG	2 cut(s)	183, 899
Eco72I	CACGTG	1 cut(s)	809
Eco81I	CCTNAGG	1 cut(s)	1005
EcoICRI	GAGCTC	1 cut(s)	802
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRI	GAATTC	2 cut(s)	703, 1084
EcoRV	GATATC	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	804
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	542, 891
FalI	AAGNNNNNCTT	4 cut(s)	767, 799, 1156, 1188
FaqI	GGGAC	1 cut(s)	946
FatI	CATG	2 cut(s)	538, 887
FblI	GTMKAC	1 cut(s)	1222
Fnu4HI	GCNGC	6 cut(s)	12, 102, 514, 822, 884, 924
FokI	GGATG	2 cut(s)	522, 671
FriOI	GRGCYC	1 cut(s)	804
Fsp4HI	GCNGC	6 cut(s)	12, 102, 514, 822, 884, 924
FspBI	CTAG	1 cut(s)	1130
FspI	TGCGCA	1 cut(s)	1017
GlaI	GCGC	2 cut(s)	76, 1017
GluI	GCNGC	6 cut(s)	12, 102, 514, 822, 884, 924
GsuI	CTGGAG	1 cut(s)	1055
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	2 cut(s)	114, 289
HhaI	GCGC	2 cut(s)	77, 1018
Hin1II	CATG	2 cut(s)	542, 891
Hin6I	GCGC	2 cut(s)	75, 1016
HinP1I	GCGC	2 cut(s)	75, 1016
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HindIII	AAGCTT	3 cut(s)	47, 578, 863
HinfI	GANTC	8 cut(s)	186, 202, 535, 596, 1042, 1115, 1167, 1209
HpaII	CCGG	2 cut(s)	114, 289
HphI	GGTGA	5 cut(s)	257, 569, 803, 963, 1085
Hpy166II	GTNNAC	4 cut(s)	389, 588, 1148, 1223
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	5 cut(s)	161, 352, 398, 1130, 1185
Hpy8I	GTNNAC	4 cut(s)	389, 588, 1148, 1223
HpyAV	CCTTC	2 cut(s)	149, 771
HpyCH4III	ACNGT	7 cut(s)	172, 284, 358, 592, 622, 960, 1136
HpyCH4IV	ACGT	2 cut(s)	628, 808
HpyCH4V	TGCA	6 cut(s)	34, 513, 638, 755, 828, 1058
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 40, 294, 519, 883
HpyF3I	CTNAG	8 cut(s)	26, 213, 383, 480, 492, 947, 965, 1005
HpySE526I	ACGT	2 cut(s)	628, 808
Hsp92II	CATG	2 cut(s)	542, 891
HspAI	GCGC	2 cut(s)	75, 1016
Kzo9I	GATC	2 cut(s)	61, 968
LguI	GCTCTTC	1 cut(s)	792
LmnI	GCTCC	2 cut(s)	116, 326
Lsp1109I	GCAGC	5 cut(s)	23, 525, 808, 895, 910
LweI	GCATC	3 cut(s)	133, 500, 1045
MaeI	CTAG	1 cut(s)	1130
MaeII	ACGT	2 cut(s)	628, 808
MaeIII	GTNAC	1 cut(s)	932
MalI	GATC	2 cut(s)	63, 970
MboI	GATC	2 cut(s)	61, 968
MfeI	CAATTG	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	804
MluCI	AATT	6 cut(s)	193, 237, 528, 703, 847, 1084
MlyI	GAGTC	2 cut(s)	1176, 1218
MseI	TTAA	7 cut(s)	20, 498, 531, 576, 582, 605, 726
MslI	CAYNNNNRTG	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	821
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	2 cut(s)	114, 289
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	36
MwoI	GCNNNNNNNGC	5 cut(s)	11, 40, 294, 519, 883
NdeII	GATC	2 cut(s)	61, 968
NlaIII	CATG	2 cut(s)	542, 891
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	932
NsbI	TGCGCA	1 cut(s)	1017
NspV	TTCGAA	1 cut(s)	913
PciSI	GCTCTTC	1 cut(s)	792
PctI	GAATGC	1 cut(s)	36
PfeI	GAWTC	6 cut(s)	186, 202, 535, 596, 1042, 1115
PkrI	GCNGC	6 cut(s)	13, 103, 515, 823, 885, 925
PleI	GAGTC	2 cut(s)	1175, 1217
PmaCI	CACGTG	1 cut(s)	809
PmlI	CACGTG	1 cut(s)	809
PpsI	GAGTC	2 cut(s)	1175, 1217
Ppu21I	YACGTR	1 cut(s)	809
PpuMI	RGGWCCY	1 cut(s)	158
PsiI	TTATAA	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	804
Psp5II	RGGWCCY	1 cut(s)	158
PspCI	CACGTG	1 cut(s)	809
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	158
PspPPI	RGGWCCY	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	640
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	1 cut(s)	1011
RsaNI	GTAC	1 cut(s)	1010
RseI	CAYNNNNRTG	1 cut(s)	543
SacI	GAGCTC	1 cut(s)	804
SapI	GCTCTTC	1 cut(s)	792
SaqAI	TTAA	7 cut(s)	20, 498, 531, 576, 582, 605, 726
SatI	GCNGC	6 cut(s)	12, 102, 514, 822, 884, 924
Sau3AI	GATC	2 cut(s)	61, 968
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	2 cut(s)	1176, 1218
SduI	GDGCHC	1 cut(s)	804
SfaNI	GCATC	3 cut(s)	133, 500, 1045
SfcI	CTRYAG	1 cut(s)	636
SfuI	TTCGAA	1 cut(s)	913
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	2 cut(s)	6, 581
SmoI	CTYRAG	2 cut(s)	6, 581
Sse9I	AATT	6 cut(s)	193, 237, 528, 703, 847, 1084
SsiI	CCGC	2 cut(s)	99, 102
SspMI	CTAG	1 cut(s)	1130
SstI	GAGCTC	1 cut(s)	804
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	7 cut(s)	172, 284, 358, 592, 622, 960, 1136
TaiI	ACGT	2 cut(s)	631, 811
TaqI	TCGA	6 cut(s)	141, 153, 276, 353, 913, 1178
TasI	AATT	6 cut(s)	193, 237, 528, 703, 847, 1084
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	6 cut(s)	186, 202, 535, 596, 1042, 1115
Tru1I	TTAA	7 cut(s)	20, 498, 531, 576, 582, 605, 726
Tru9I	TTAA	7 cut(s)	20, 498, 531, 576, 582, 605, 726
TscAI	CASTG	6 cut(s)	289, 597, 627, 687, 1141, 1200
TseFI	GTSAC	1 cut(s)	932
TseI	GCWGC	5 cut(s)	11, 513, 821, 883, 923
Tsp45I	GTSAC	1 cut(s)	932
TspDTI	ATGAA	5 cut(s)	663, 1005, 1043, 1055, 1065
TspRI	CASTG	6 cut(s)	289, 597, 627, 687, 1141, 1200
Vha464I	CTTAAG	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	3 cut(s)	703, 847, 1084
XbaI	TCTAGA	1 cut(s)	1129
XmiI	GTMKAC	1 cut(s)	1222
XspI	CTAG	1 cut(s)	1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.