Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008037

Physical Location & Seq

Genomic Coordinates Reverse (-)

17352530 .. 17353048

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1109900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTACGCCGAAAGGTTCTTCAACATTAAGATTCAGATACCCGAGAGGTACCCATTTCAGCCTCCGAGTGTGACATTTACGACGCCAATTTACCACCCGAATATCGACATCGGAGGTCGGATTTGCCTGGACATTCTTAATCTTCCTCCGAATGAGGCACGGCAACCATCATTAAACATTTCAATTTTTCTTACAAGCATTGGGTTGTTATTGAGTGAACCCAATCCAGATGATGGCCTCATGTGTGAAGTGAGTAGGGAATTCAAATACAACATGCAAGCTTTCGACCAGAAAGCTCGATCTATGACTCAGAAATATGCCCAGGCTTCCGCTTCTGAGAGTGTTTGTGACTCTCAATCTCAACCTCAAAGCAACGCAAATCCACTCACGGTGTTGTTGGAGGTTAAAGCTTCAATCCATGAGTCAAAACATGAAGTAGAGGAGTCTGCTGTGAGTAGTCATAAGAAGGTAATTGGGGGTAGCAGGAAGCTGTCGTTGGAGTCTTCAGGCCAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

UQ_con

Protein Analysis

173

Amino Acids

19.14

Weight (kDa)

5.8

Isoelectric Point (pI)

63.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	1 - 101	4e-28	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24515 AT3G24515 AT3G24515 AT3G24515
fragaria_vesca	FvH4_1g04830 FvH4_1g04830 FvH4_4g32890
malus_domestica	MD08G1128600.v1.1 MD14G1109900.v1.1 MD15G1186000.v1.1
prunus_persica	Prupe.7G230900_v2.0.a1
pyrus_communis	pycom15g16670
rosa_chinensis	RchiOBHm_Chr2g0090471
rosa_laevigata	RLG00000016116
rosa_multiflora	Rmu_sc0004514.1_g000022 Rmu_sc0014034.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151110
rosa_rugosa	Rorug02G0008200 Rorug02G0008300
rosa_samantha	Rh2AG053700 Rh2BG053200 Rh2CG055300 Rh2DG053900
rosa_wichuraiana	Rw2G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	48
AccB7I	CCANNNNNTGG	1 cut(s)	233
AciI	CCGC	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	2 cut(s)	5, 50
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	4 cut(s)	22, 183, 265, 414
AjnI	CCWGG	2 cut(s)	126, 321
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	4 cut(s)	281, 296, 410, 490
AluI	AGCT	4 cut(s)	281, 296, 410, 490
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	235, 508
ApoI	RAATTY	1 cut(s)	260
Asp718I	GGTACC	1 cut(s)	48
AvaI	CYCGRG	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	495
BccI	CCATC	2 cut(s)	175, 227
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	2 cut(s)	128, 323
BfaI	CTAG	1 cut(s)	517
Bme1390I	CCNGG	2 cut(s)	128, 323
BmeT110I	CYCGRG	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	2 cut(s)	128, 323
BpiI	GAAGAC	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	128, 323
BseDI	CCNNGG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	323, 327
BseRI	GAGGAG	1 cut(s)	455
BshFI	GGCC	2 cut(s)	237, 510
BshNI	GGYRCC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	233
BsnI	GGCC	2 cut(s)	237, 510
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	299
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	2 cut(s)	237, 510
BspCNI	CTCAG	2 cut(s)	322, 328
BspLI	GGNNCC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	1 cut(s)	299
BssNI	GRCGYC	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	128, 323
Bst4CI	ACNGT	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	2 cut(s)	309, 336
BstKTI	GATC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	299
BstNI	CCWGG	2 cut(s)	128, 323
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	126, 321
BstV2I	GAAGAC	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	237, 510
Cac8I	GCNNGC	1 cut(s)	279
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	4, 49
CviAII	CATG	4 cut(s)	241, 274, 419, 431
CviJI	RGCY	8 cut(s)	61, 237, 281, 296, 326, 410, 490, 510
CviKI_1	RGCY	8 cut(s)	61, 237, 281, 296, 326, 410, 490, 510
CviQI	GTAC	2 cut(s)	4, 49
DdeI	CTNAG	2 cut(s)	309, 336
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	126, 321
FaeI	CATG	4 cut(s)	244, 277, 422, 434
FaiI	YATR	7 cut(s)	242, 275, 305, 318, 420, 432, 462
FatI	CATG	4 cut(s)	240, 273, 418, 430
FspBI	CTAG	1 cut(s)	517
HaeIII	GGCC	2 cut(s)	237, 510
HgaI	GACGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	244, 277, 422, 434
HindIII	AAGCTT	2 cut(s)	279, 408
HinfI	GANTC	6 cut(s)	31, 307, 350, 422, 443, 500
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	7 cut(s)	36, 66, 113, 120, 150, 312, 337
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	218
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	1 cut(s)	277
HpyF3I	CTNAG	2 cut(s)	309, 336
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	4 cut(s)	244, 277, 422, 434
KpnI	GGTACC	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	299
LpnPI	CCDG	8 cut(s)	113, 140, 240, 302, 308, 335, 469, 492
MaeI	CTAG	1 cut(s)	517
MaeIII	GTNAC	2 cut(s)	70, 347
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	3 cut(s)	10, 134, 495
MluCI	AATT	4 cut(s)	87, 183, 260, 471
MlyI	GAGTC	5 cut(s)	301, 344, 431, 452, 509
MmeI	TCCRAC	3 cut(s)	98, 378, 477
MnlI	CCTC	9 cut(s)	39, 72, 107, 148, 156, 248, 375, 394, 433
MseI	TTAA	4 cut(s)	27, 138, 173, 405
MspR9I	CCNGG	2 cut(s)	128, 323
MvaI	CCWGG	2 cut(s)	128, 323
NdeII	GATC	1 cut(s)	299
NlaIII	CATG	4 cut(s)	244, 277, 422, 434
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	70, 347
NspI	RCATGY	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	233
PleI	GAGTC	5 cut(s)	301, 344, 430, 451, 508
PpsI	GAGTC	5 cut(s)	301, 344, 430, 451, 508
Psp6I	CCWGG	2 cut(s)	126, 321
PspGI	CCWGG	2 cut(s)	126, 321
PspN4I	GGNNCC	1 cut(s)	50
RsaI	GTAC	2 cut(s)	5, 50
RsaNI	GTAC	2 cut(s)	4, 49
SaqAI	TTAA	4 cut(s)	27, 138, 173, 405
Sau3AI	GATC	1 cut(s)	299
SchI	GAGTC	5 cut(s)	301, 344, 431, 452, 509
ScrFI	CCNGG	2 cut(s)	128, 323
Sse9I	AATT	4 cut(s)	87, 183, 260, 471
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	1 cut(s)	517
StyD4I	CCNGG	2 cut(s)	126, 321
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	3 cut(s)	105, 285, 298
TasI	AATT	4 cut(s)	87, 183, 260, 471
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	4 cut(s)	27, 138, 173, 405
Tru9I	TTAA	4 cut(s)	27, 138, 173, 405
TseFI	GTSAC	2 cut(s)	70, 347
Tsp45I	GTSAC	2 cut(s)	70, 347
TspDTI	ATGAA	1 cut(s)	447
Van91I	CCANNNNNTGG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.