Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014034.1

Orthogroup ID

OG0008037

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1471

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014034.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1018 bp

atggctcaagcggcgaggctcaacctccgattgcagaaagagctcaagctcctcctcaccgaccctcctcccggcgcctccttcccactcctctcctcatcctcctccttatccaccatcgacgcccgtaaccctctcaggtacccgtttcagcctccaagtgtgacatttgcgacgccgatttatcacccgaatatcgacaccggtggccggatttgccttgacattctcaatcttcctccaaagggagcatggcaaccatcgttgaacatttcaactgtgcttacgagcattggcttgttattgagtgaaccgaatcctgatgatggccttatgtgtgaagcgagtagggagttcaaatacaatagacaagcttttgaccagaaagctcggtctatgactgagaagtatgcccaggctggggctgcagctagtgggagtagtgtttgtgacactcaatttcaaagccttgcaaatccaagcgcactggaggtggaaacaacaagccatgagtcgaaacaccaagctaatgagtctgttgtgcagctggaggttaaaacaactagccatggtttaaatcatggtgcgaatcagtctgtagcaagtcacaagaagttaattgggattagtaggaagctgtcactggagtcttcagtcccagcctgtgaaagagatgctcataaggaagggagggaagtgcttaaagaccagatggaagttgaaggaacagaaaagttgctgaaagataatcctaataagttcaatcagagtcgggagaagctatgtgggagcagacataagttatcacttggagccctgagccaatcccaggagaaaagtgacaatgacatagagaaggtggatcactgtccaccagttgaactgcaaaaccttcctttactgccgctatctggaaactcttacaagcaaggacttcgtccgagtcaagatagtaaattggtagatgacaacattaacatgggatcaaagaggccgaggcagtttggggacaagcagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

UQ_con

Protein Analysis

339

Amino Acids

37.14

Weight (kDa)

7.65

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24515 AT3G24515 AT3G24515 AT3G24515
fragaria_vesca	FvH4_1g04830 FvH4_1g04830 FvH4_4g32890
malus_domestica	MD08G1128600.v1.1 MD14G1109900.v1.1 MD15G1186000.v1.1
prunus_persica	Prupe.7G230900_v2.0.a1
pyrus_communis	pycom15g16670
rosa_chinensis	RchiOBHm_Chr2g0090471
rosa_laevigata	RLG00000016116
rosa_multiflora	Rmu_sc0004514.1_g000022 Rmu_sc0014034.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151110
rosa_rugosa	Rorug02G0008200 Rorug02G0008300
rosa_samantha	Rh2AG053700 Rh2BG053200 Rh2CG055300 Rh2DG053900
rosa_wichuraiana	Rw2G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	141
AccB1I	GGYRCC	2 cut(s)	74, 141
AciI	CCGC	2 cut(s)	11, 905
AclWI	GGATC	2 cut(s)	870, 991
AcoI	YGGCCR	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	636
AcyI	GRCGYC	3 cut(s)	75, 123, 176
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	8 cut(s)	71, 210, 245, 326, 420, 421, 829, 911
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	7 cut(s)	268, 276, 358, 464, 722, 763, 881
AjnI	CCWGG	2 cut(s)	414, 828
AluBI	AGCT	9 cut(s)	43, 49, 374, 389, 431, 527, 547, 637, 781
AluI	AGCT	9 cut(s)	43, 49, 374, 389, 431, 527, 547, 637, 781
Alw21I	GWGCWC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	870, 991
AoxI	GGCC	3 cut(s)	208, 328, 992
ApeKI	GCWGC	4 cut(s)	425, 428, 544, 1015
AsiGI	ACCGGT	1 cut(s)	203
Asp718I	GGTACC	1 cut(s)	141
AspLEI	GCGC	2 cut(s)	77, 485
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	49, 179
BanI	GGYRCC	2 cut(s)	74, 141
BanII	GRGCYC	2 cut(s)	45, 817
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	412, 440, 556
BccI	CCATC	4 cut(s)	125, 268, 320, 706
BcgI	CGANNNNNNTGC	2 cut(s)	917, 951
BciT130I	CCWGG	2 cut(s)	416, 830
BcnI	CCSGG	1 cut(s)	72
BfaI	CTAG	2 cut(s)	432, 564
BfmI	CTRYAG	2 cut(s)	426, 597
BfoI	RGCGCY	1 cut(s)	78
BisI	GCNGC	6 cut(s)	12, 426, 429, 545, 905, 1016
BlsI	GCNGC	6 cut(s)	13, 427, 430, 546, 906, 1017
Bme1390I	CCNGG	3 cut(s)	72, 416, 830
BmiI	GGNNCC	3 cut(s)	76, 143, 814
BmrFI	CCNGG	3 cut(s)	72, 416, 830
BmsI	GCATC	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	642
BpmI	CTGGAG	3 cut(s)	509, 569, 665
Bpu10I	CCTNAGC	1 cut(s)	818
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	72
BsaHI	GRCGYC	3 cut(s)	75, 123, 176
BsaJI	CCNNGG	4 cut(s)	414, 568, 828, 995
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	8 cut(s)	71, 210, 245, 326, 420, 421, 829, 911
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	3 cut(s)	492, 648, 875
BseBI	CCWGG	2 cut(s)	416, 830
BseDI	CCNNGG	4 cut(s)	414, 568, 828, 995
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	8 cut(s)	71, 210, 245, 326, 420, 421, 829, 911
BseMII	CTCAG	3 cut(s)	151, 393, 809
BseNI	ACTGG	3 cut(s)	492, 648, 875
BseRI	GAGGAG	6 cut(s)	41, 44, 57, 80, 85, 94
BseXI	GCAGC	3 cut(s)	412, 440, 556
BseYI	CCCAGC	2 cut(s)	419, 658
BsgI	GTGCAG	1 cut(s)	563
BshFI	GGCC	3 cut(s)	210, 330, 994
BshNI	GGYRCC	2 cut(s)	74, 141
BshTI	ACCGGT	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	3 cut(s)	72, 204, 211
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	8 cut(s)	71, 210, 245, 326, 420, 421, 829, 911
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	3 cut(s)	210, 330, 994
Bsp1286I	GDGCHC	2 cut(s)	45, 817
Bsp143I	GATC	2 cut(s)	862, 983
Bsp19I	CCATGG	1 cut(s)	568
BspACI	CCGC	2 cut(s)	11, 905
BspANI	GGCC	3 cut(s)	210, 330, 994
BspCNI	CTCAG	3 cut(s)	150, 394, 810
BspLI	GGNNCC	3 cut(s)	76, 143, 814
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	2 cut(s)	870, 991
BspT107I	GGYRCC	2 cut(s)	74, 141
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	3 cut(s)	492, 648, 875
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	4 cut(s)	414, 568, 828, 995
BssMI	GATC	2 cut(s)	862, 983
BssNI	GRCGYC	3 cut(s)	75, 123, 176
BssT1I	CCWWGG	1 cut(s)	568
Bst2UI	CCWGG	2 cut(s)	416, 830
Bst4CI	ACNGT	2 cut(s)	280, 869
BstACI	GRCGYC	3 cut(s)	75, 123, 176
BstDEI	CTNAG	3 cut(s)	137, 402, 818
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	77, 485
BstKTI	GATC	2 cut(s)	865, 986
BstMBI	GATC	2 cut(s)	862, 983
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 40, 216, 425
BstNI	CCWGG	2 cut(s)	416, 830
BstSCI	CCNGG	3 cut(s)	70, 414, 828
BstSFI	CTRYAG	2 cut(s)	426, 597
BstV1I	GCAGC	3 cut(s)	412, 440, 556
BstV2I	GAAGAC	1 cut(s)	642
BsuRI	GGCC	3 cut(s)	210, 330, 994
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	98
BtsIMutI	CAGTG	3 cut(s)	485, 641, 865
CfoI	GCGC	2 cut(s)	77, 485
Cfr10I	RCCGGY	1 cut(s)	203
CseI	GACGC	2 cut(s)	131, 184
Csp6I	GTAC	1 cut(s)	142
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	5 cut(s)	252, 509, 569, 581, 979
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	137, 402, 818
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	2 cut(s)	864, 985
DpnII	GATC	2 cut(s)	862, 983
DraI	TTTAAA	1 cut(s)	576
EaeI	YGGCCR	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	568
Eco24I	GRGCYC	2 cut(s)	45, 817
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	414, 828
EcoT14I	CCWWGG	1 cut(s)	568
EcoT38I	GRGCYC	2 cut(s)	45, 817
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	568
FaeI	CATG	5 cut(s)	255, 512, 572, 584, 982
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	5 cut(s)	251, 508, 568, 580, 978
Fnu4HI	GCNGC	6 cut(s)	12, 426, 429, 545, 905, 1016
FokI	GGATG	1 cut(s)	85
FriOI	GRGCYC	2 cut(s)	45, 817
Fsp4HI	GCNGC	6 cut(s)	12, 426, 429, 545, 905, 1016
FspBI	CTAG	2 cut(s)	432, 564
GlaI	GCGC	2 cut(s)	76, 484
GluI	GCNGC	6 cut(s)	12, 426, 429, 545, 905, 1016
GsaI	CCCAGC	2 cut(s)	423, 662
GsuI	CTGGAG	3 cut(s)	509, 569, 665
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	3 cut(s)	210, 330, 994
HapII	CCGG	3 cut(s)	72, 204, 211
HgaI	GACGC	2 cut(s)	131, 184
HhaI	GCGC	2 cut(s)	77, 485
Hin1I	GRCGYC	3 cut(s)	75, 123, 176
Hin1II	CATG	5 cut(s)	255, 512, 572, 584, 982
Hin6I	GCGC	2 cut(s)	75, 483
HinP1I	GCGC	2 cut(s)	75, 483
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	7 cut(s)	316, 512, 533, 589, 647, 769, 943
HpaII	CCGG	3 cut(s)	72, 204, 211
HphI	GGTGA	2 cut(s)	49, 179
Hpy166II	GTNNAC	2 cut(s)	311, 872
Hpy188I	TCNGA	3 cut(s)	29, 768, 942
Hpy188III	TCNNGA	4 cut(s)	320, 773, 912, 947
Hpy8I	GTNNAC	2 cut(s)	311, 872
Hpy99I	CGWCG	2 cut(s)	125, 178
HpyAV	CCTTC	5 cut(s)	91, 680, 716, 850, 902
HpyCH4III	ACNGT	2 cut(s)	280, 869
HpyCH4V	TGCA	5 cut(s)	34, 428, 473, 544, 886
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 40, 216, 425
HpyF3I	CTNAG	3 cut(s)	137, 402, 818
Hsp92I	GRCGYC	3 cut(s)	75, 123, 176
Hsp92II	CATG	5 cut(s)	255, 512, 572, 584, 982
HspAI	GCGC	2 cut(s)	75, 483
KasI	GGCGCC	1 cut(s)	74
KpnI	GGTACC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	862, 983
LmnI	GCTCC	4 cut(s)	54, 248, 789, 812
Lsp1109I	GCAGC	3 cut(s)	412, 440, 556
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	2 cut(s)	432, 564
MaeIII	GTNAC	6 cut(s)	128, 163, 449, 605, 639, 839
MalI	GATC	2 cut(s)	864, 985
MboI	GATC	2 cut(s)	862, 983
MboII	GAAGA	2 cut(s)	227, 642
MhlI	GDGCHC	2 cut(s)	45, 817
MluCI	AATT	3 cut(s)	458, 618, 956
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	5 cut(s)	521, 542, 656, 778, 952
MseI	TTAA	5 cut(s)	555, 575, 617, 702, 975
MslI	CAYNNNNRTG	1 cut(s)	977
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	3 cut(s)	72, 204, 211
MspR9I	CCNGG	3 cut(s)	72, 416, 830
MvaI	CCWGG	2 cut(s)	416, 830
MwoI	GCNNNNNNNGC	4 cut(s)	11, 40, 216, 425
NarI	GGCGCC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	2 cut(s)	862, 983
NlaIII	CATG	5 cut(s)	255, 512, 572, 584, 982
NlaIV	GGNNCC	3 cut(s)	76, 143, 814
NmuCI	GTSAC	5 cut(s)	163, 449, 605, 639, 839
PfeI	GAWTC	2 cut(s)	316, 589
PflFI	GACNNNGTC	1 cut(s)	936
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	6 cut(s)	13, 427, 430, 546, 906, 1017
PleI	GAGTC	5 cut(s)	520, 541, 655, 777, 951
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	5 cut(s)	520, 541, 655, 777, 951
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	414, 828
PspFI	CCCAGC	2 cut(s)	419, 658
PspGI	CCWGG	2 cut(s)	414, 828
PspN4I	GGNNCC	3 cut(s)	76, 143, 814
PstI	CTGCAG	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	936
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	977
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	5 cut(s)	555, 575, 617, 702, 975
SatI	GCNGC	6 cut(s)	12, 426, 429, 545, 905, 1016
Sau3AI	GATC	2 cut(s)	862, 983
SchI	GAGTC	5 cut(s)	521, 542, 656, 778, 952
ScrFI	CCNGG	3 cut(s)	72, 416, 830
SduI	GDGCHC	2 cut(s)	45, 817
SfaNI	GCATC	1 cut(s)	664
SfcI	CTRYAG	2 cut(s)	426, 597
SfoI	GGCGCC	1 cut(s)	76
SgrAI	CRCCGGYG	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	977
SmlI	CTYRAG	2 cut(s)	6, 44
SmoI	CTYRAG	2 cut(s)	6, 44
Sse9I	AATT	3 cut(s)	458, 618, 956
SsiI	CCGC	2 cut(s)	11, 905
SspDI	GGCGCC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	432, 564
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	3 cut(s)	70, 414, 828
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	2 cut(s)	280, 869
TaqI	TCGA	3 cut(s)	120, 198, 515
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	3 cut(s)	458, 618, 956
TauI	GCSGC	2 cut(s)	14, 907
TfiI	GAWTC	2 cut(s)	316, 589
Tru1I	TTAA	5 cut(s)	555, 575, 617, 702, 975
Tru9I	TTAA	5 cut(s)	555, 575, 617, 702, 975
TscAI	CASTG	3 cut(s)	492, 648, 872
TseFI	GTSAC	5 cut(s)	163, 449, 605, 639, 839
TseI	GCWGC	4 cut(s)	425, 428, 544, 1015
Tsp45I	GTSAC	5 cut(s)	163, 449, 605, 639, 839
TspRI	CASTG	3 cut(s)	492, 648, 872
Tth111I	GACNNNGTC	1 cut(s)	936
XcmI	CCANNNNNNNNNTGG	1 cut(s)	249
XspI	CTAG	2 cut(s)	432, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.