Rh2BG053200

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
3791192 .. 3796999
5808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG053200.1

Sequence Viewer

Length: 1662 bp
ATGAAAGTTACGCCTATGGAGGTGGAACCTGACGAAGGGATTTTATCAAGTAAAATCCCGTGTTCAGATCCTTCTTTAAGATCCCACGAAAATCAAGTCCCTTCACGTCATTTTGCCAAACAAGGGACATTGATATGGGGATTTCTATCTCCCTCCAAATTGTCTCGTCCCTCCTTTATCTCCCTCATCCAAACACTGCCTAAGGGAGCATGGCAACCATCGTTGAACATTTCAACTGTGCTTACGAGCATTGGCTTGTTATTGAGTGAACCGAATCCTGATGATGGCCTTATGTGTGAAGCGAGTAGGGAGTTCAAATACAATAGACAAGCTTTTGACCAGAAAGCTCGGTCTATGACTGAGAAGTATGCCCAGGCTGGGGCTGCAGCTAGTGGGAGTAGTGTTTGTGACACTCAATTTCAAAGCCTTGCAAATCCAAGCGCACTGGAGGTGGAAACAACTAGCCATGAGTTGAAACACCAAGCTAATGAGTCTGTTGTGCAGCTGGAGGTTAAAACAACTAGCCATGGTTTAAATCATGATGCAAATCAGTCTGTAGCAAGTCACAAGAAGTTAATTGGGATTAGTAGGAAGCTGTCAGTGGAGTCTTCAGTCCCAGCCTGCGAAAGAGATGCTCGTAAGGAAGGGAGGGAAGTGCCTAAAGACCAGATGGAAGTTGAAGGAGCAGAAAAGTTGCTGAAAGATAATCCTGATAAGTTCAATATGAATCAGGAGAAGCTATGTGGGAGCAGATGGAAGTTAACGCTAGGAGCCCTCAGCCAATCCCAGGAGAAAAGTGAGAATGACATACAAAAGTTGGATCACTGTCCATCAGTTGAACTGCAAAACCTTCCTGTGCCATCTGCAGGATCACTGCTGCCGCTATCTGGAAACTCTTACAAGCAAGGACTTCATCCGAGTCAAGATAGTAAATTGGTAGATGACAACATTAACATGGGATCAAAGAGGCCGAGGCAGTTTGGGGACAAGCAGCCGTTGGGTTCATTGAGCACATCCCAAGTGATTAGTGAAAGTAAAGATGAAATGATTGTAACCCCTCAAATTCTGCCTTCTCATTCCCATATCAATGTGTTATCTGAGCCTTTGCCAGCAGCCCCAGTTGTTGACAGTGTCAAACGGCAACCAAATAAAGATATGATGGATGGAATGGGAAATGGCTCTATTGATACAAGTCGCAAGAGGCTTTGTTTAGCTGGCAAGAAGCTTTCACTTGGATTTAGAGGCTCATCGCAGACGCAGGGAAAGGATAACAAGGAGAATGTGGTGCCACAGAGGAGCGAGTATAATGGCAGTGTATCAAAGAATTGTGGTGAAAATGGAAGCCATAAGAAATTTGGGATTGCTCAGTTGGAAGAGAACAACAGCAATATACATCCACACCCCCATAGTGTCTTGTCATATCCATCCAAGTCCCTTCCTAAGCAACATCAGGACTTCAGGGCGGCTGAGAAGCAGCATCAAGATTACACTGACATTACTGGAGCAACTAAGCAAAAGAAAGGCAAAGAAACAGCAAGACCCGAGTGTGAGGCAGTAATTGTGTTGGACAGTGAAGACAGTGAGGAAGAAAAGACCATCCCTGCGAAATCTAAATCAGTACTAGCACGAAAGCGCCTGGGAAAGTGGAGAGTGAGAACGTGA

Protein Analysis

553

Amino Acids

60.77

Weight (kDa)

8.53

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 65 - 118 2.2e-08 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1285
AciI CCGC 2 cut(s) 881, 1463
AclWI GGATC 5 cut(s) 62, 75, 828, 877, 967
AcsI RAATTY 2 cut(s) 1062, 1352
AcuI CTGAAG 2 cut(s) 594, 1441
AfaI GTAC 1 cut(s) 1620
AfiI CCNNNNNNNGG 8 cut(s) 35, 123, 284, 378, 379, 787, 866, 887
AgsI TTSAA 8 cut(s) 226, 234, 316, 422, 475, 680, 721, 839
AjiI CACGTC 1 cut(s) 107
AjnI CCWGG 3 cut(s) 372, 786, 1635
AluBI AGCT 9 cut(s) 332, 347, 389, 485, 505, 595, 739, 1214, 1225
AluI AGCT 9 cut(s) 332, 347, 389, 485, 505, 595, 739, 1214, 1225
Alw21I GWGCWC 1 cut(s) 1013
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 5 cut(s) 62, 75, 828, 877, 967
Ama87I CYCGRG 1 cut(s) 1541
AoxI GGCC 2 cut(s) 286, 968
ApeKI GCWGC 7 cut(s) 383, 386, 502, 877, 991, 1112, 1474
ApoI RAATTY 2 cut(s) 1062, 1352
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AspLEI GCGC 2 cut(s) 443, 1635
AsuHPI GGTGA 1 cut(s) 1343
AvaI CYCGRG 1 cut(s) 1541
AxyI CCTNAGG 1 cut(s) 201
BanI GGYRCC 1 cut(s) 1285
BanII GRGCYC 1 cut(s) 775
BbsI GAAGAC 2 cut(s) 600, 1581
Bbv12I GWGCWC 1 cut(s) 1013
BbvCI CCTCAGC 1 cut(s) 776
BbvI GCAGC 7 cut(s) 370, 398, 514, 864, 1003, 1124, 1486
BceAI ACGGC 2 cut(s) 979, 1154
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 3 cut(s) 374, 788, 1637
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 5 cut(s) 390, 462, 522, 767, 1622
BfmI CTRYAG 3 cut(s) 384, 555, 864
BfoI RGCGCY 1 cut(s) 1636
BisI GCNGC 9 cut(s) 384, 387, 503, 878, 881, 992, 1113, 1464, 1475
BlsI GCNGC 9 cut(s) 385, 388, 504, 879, 882, 993, 1114, 1465, 1476
BmcAI AGTACT 1 cut(s) 1620
Bme1390I CCNGG 3 cut(s) 374, 788, 1637
BmeT110I CYCGRG 1 cut(s) 1541
BmgBI CACGTC 1 cut(s) 107
BmiI GGNNCC 3 cut(s) 27, 772, 1287
BmrFI CCNGG 3 cut(s) 374, 788, 1637
BmrI ACTGGG 1 cut(s) 1112
BmsI GCATC 3 cut(s) 532, 622, 1486
BmuI ACTGGG 1 cut(s) 1112
BpiI GAAGAC 2 cut(s) 600, 1581
BpmI CTGGAG 3 cut(s) 467, 527, 1521
Bpu10I CCTNAGC 2 cut(s) 776, 1440
BsaBI GATNNNNATC 2 cut(s) 145, 546
BsaJI CCNNGG 5 cut(s) 372, 526, 786, 971, 1636
Bsc4I CCNNNNNNNGG 8 cut(s) 35, 123, 284, 378, 379, 787, 866, 887
Bse1I ACTGG 3 cut(s) 450, 1118, 1504
Bse21I CCTNAGG 1 cut(s) 201
Bse8I GATNNNNATC 2 cut(s) 145, 546
BseBI CCWGG 3 cut(s) 374, 788, 1637
BseDI CCNNGG 5 cut(s) 372, 526, 786, 971, 1636
BseGI GGATG 7 cut(s) 186, 913, 1013, 1168, 1393, 1424, 1596
BseJI GATNNNNATC 2 cut(s) 145, 546
BseLI CCNNNNNNNGG 8 cut(s) 35, 123, 284, 378, 379, 787, 866, 887
BseMII CTCAG 5 cut(s) 351, 790, 1089, 1379, 1458
BseNI ACTGG 3 cut(s) 450, 1118, 1504
BseRI GAGGAG 1 cut(s) 1309
BseXI GCAGC 7 cut(s) 370, 398, 514, 864, 1003, 1124, 1486
BseYI CCCAGC 2 cut(s) 377, 616
BsgI GTGCAG 1 cut(s) 521
BshFI GGCC 2 cut(s) 288, 970
BshNI GGYRCC 1 cut(s) 1285
BsiHKAI GWGCWC 1 cut(s) 1013
BsiHKCI CYCGRG 1 cut(s) 1541
BslFI GGGAC 6 cut(s) 83, 139, 153, 599, 998, 1417
BslI CCNNNNNNNGG 8 cut(s) 35, 123, 284, 378, 379, 787, 866, 887
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 6 cut(s) 83, 139, 153, 599, 998, 1417
BsnI GGCC 2 cut(s) 288, 970
BsoBI CYCGRG 1 cut(s) 1541
Bsp1286I GDGCHC 2 cut(s) 775, 1013
Bsp143I GATC 5 cut(s) 67, 80, 820, 869, 959
Bsp19I CCATGG 1 cut(s) 526
BspACI CCGC 2 cut(s) 881, 1463
BspANI GGCC 2 cut(s) 288, 970
BspCNI CTCAG 5 cut(s) 352, 789, 1090, 1378, 1459
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 3 cut(s) 27, 772, 1287
BspMAI CTGCAG 2 cut(s) 388, 868
BspPI GGATC 5 cut(s) 62, 75, 828, 877, 967
BspT107I GGYRCC 1 cut(s) 1285
BsrI ACTGG 3 cut(s) 450, 1118, 1504
BssECI CCNNGG 5 cut(s) 372, 526, 786, 971, 1636
BssMI GATC 5 cut(s) 67, 80, 820, 869, 959
BssT1I CCWWGG 1 cut(s) 526
Bst2UI CCWGG 3 cut(s) 374, 788, 1637
Bst4CI ACNGT 5 cut(s) 238, 827, 1130, 1571, 1580
Bst6I CTCTTC 1 cut(s) 1368
BstC8I GCNNGC 3 cut(s) 622, 1110, 1216
BstDEI CTNAG 8 cut(s) 201, 360, 776, 1098, 1365, 1440, 1467, 1509
BstDSI CCRYGG 1 cut(s) 526
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 7 cut(s) 186, 913, 1013, 1168, 1393, 1424, 1596
BstH2I RGCGCY 1 cut(s) 1636
BstHHI GCGC 2 cut(s) 443, 1635
BstKTI GATC 5 cut(s) 70, 83, 823, 872, 962
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 5 cut(s) 67, 80, 820, 869, 959
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 3 cut(s) 374, 788, 1637
BstSCI CCNGG 3 cut(s) 372, 786, 1635
BstSFI CTRYAG 3 cut(s) 384, 555, 864
BstV1I GCAGC 7 cut(s) 370, 398, 514, 864, 1003, 1124, 1486
BstV2I GAAGAC 2 cut(s) 600, 1581
BstX2I RGATCY 2 cut(s) 67, 80
BstYI RGATCY 2 cut(s) 67, 80
Bsu36I CCTNAGG 1 cut(s) 201
BsuRI GGCC 2 cut(s) 288, 970
BtgI CCRYGG 1 cut(s) 526
BtgZI GCGATG 1 cut(s) 1233
BtrI CACGTC 1 cut(s) 107
BtsCI GGATG 7 cut(s) 186, 913, 1013, 1168, 1393, 1424, 1596
BtsI GCAGTG 3 cut(s) 194, 872, 1318
Cac8I GCNNGC 3 cut(s) 622, 1110, 1216
CciI TCATGA 1 cut(s) 538
CfoI GCGC 2 cut(s) 443, 1635
CseI GACGC 1 cut(s) 1264
Csp6I GTAC 1 cut(s) 1619
CviAII CATG 5 cut(s) 210, 467, 527, 539, 955
CviQI GTAC 1 cut(s) 1619
DdeI CTNAG 8 cut(s) 201, 360, 776, 1098, 1365, 1440, 1467, 1509
DpnI GATC 5 cut(s) 69, 82, 822, 871, 961
DpnII GATC 5 cut(s) 67, 80, 820, 869, 959
DraI TTTAAA 1 cut(s) 534
Eam1104I CTCTTC 1 cut(s) 1368
EarI CTCTTC 1 cut(s) 1368
Eco130I CCWWGG 1 cut(s) 526
Eco24I GRGCYC 1 cut(s) 775
Eco57I CTGAAG 2 cut(s) 594, 1441
Eco81I CCTNAGG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 1541
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoRII CCWGG 3 cut(s) 372, 786, 1635
EcoT14I CCWWGG 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 775
ErhI CCWWGG 1 cut(s) 526
FaeI CATG 5 cut(s) 213, 470, 530, 542, 958
FaqI GGGAC 6 cut(s) 83, 139, 153, 599, 998, 1417
FatI CATG 5 cut(s) 209, 466, 526, 538, 954
Fnu4HI GCNGC 9 cut(s) 384, 387, 503, 878, 881, 992, 1113, 1464, 1475
FokI GGATG 7 cut(s) 173, 900, 1000, 1175, 1380, 1411, 1583
FriOI GRGCYC 1 cut(s) 775
Fsp4HI GCNGC 9 cut(s) 384, 387, 503, 878, 881, 992, 1113, 1464, 1475
FspBI CTAG 5 cut(s) 390, 462, 522, 767, 1622
GlaI GCGC 2 cut(s) 442, 1634
GluI GCNGC 9 cut(s) 384, 387, 503, 878, 881, 992, 1113, 1464, 1475
GsaI CCCAGC 2 cut(s) 381, 620
GsuI CTGGAG 3 cut(s) 467, 527, 1521
HaeII RGCGCY 1 cut(s) 1636
HaeIII GGCC 2 cut(s) 288, 970
HgaI GACGC 1 cut(s) 1264
HhaI GCGC 2 cut(s) 443, 1635
Hin1II CATG 5 cut(s) 213, 470, 530, 542, 958
Hin6I GCGC 2 cut(s) 441, 1633
HinP1I GCGC 2 cut(s) 441, 1633
HincII GTYRAC 2 cut(s) 762, 1126
HindII GTYRAC 2 cut(s) 762, 1126
HindIII AAGCTT 2 cut(s) 330, 1223
HinfI GANTC 5 cut(s) 274, 491, 605, 727, 919
HpaI GTTAAC 1 cut(s) 762
HphI GGTGA 1 cut(s) 1343
Hpy166II GTNNAC 3 cut(s) 269, 762, 1126
Hpy188I TCNGA 3 cut(s) 67, 918, 1099
Hpy188III TCNNGA 8 cut(s) 278, 539, 710, 731, 888, 923, 1451, 1481
Hpy8I GTNNAC 3 cut(s) 269, 762, 1126
HpyAV CCTTC 8 cut(s) 29, 81, 111, 638, 674, 860, 1080, 1445
HpyCH4III ACNGT 5 cut(s) 238, 827, 1130, 1571, 1580
HpyCH4IV ACGT 2 cut(s) 106, 1658
HpyCH4V TGCA 6 cut(s) 386, 431, 502, 545, 844, 866
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 8 cut(s) 201, 360, 776, 1098, 1365, 1440, 1467, 1509
HpySE526I ACGT 2 cut(s) 106, 1658
Hsp92II CATG 5 cut(s) 213, 470, 530, 542, 958
HspAI GCGC 2 cut(s) 441, 1633
KspAI GTTAAC 1 cut(s) 762
Kzo9I GATC 5 cut(s) 67, 80, 820, 869, 959
LmnI GCTCC 6 cut(s) 206, 683, 747, 770, 1296, 1502
Lsp1109I GCAGC 7 cut(s) 370, 398, 514, 864, 1003, 1124, 1486
LweI GCATC 3 cut(s) 532, 622, 1486
MaeI CTAG 5 cut(s) 390, 462, 522, 767, 1622
MaeII ACGT 2 cut(s) 106, 1658
MaeIII GTNAC 4 cut(s) 7, 407, 563, 1051
MalI GATC 5 cut(s) 69, 82, 822, 871, 961
MboI GATC 5 cut(s) 67, 80, 820, 869, 959
MboII GAAGA 4 cut(s) 600, 1385, 1586, 1598
MflI RGATCY 2 cut(s) 67, 80
MhlI GDGCHC 2 cut(s) 775, 1013
MluCI AATT 8 cut(s) 158, 416, 576, 932, 1062, 1324, 1352, 1557
MlyI GAGTC 3 cut(s) 500, 614, 928
MmeI TCCRAC 3 cut(s) 798, 1350, 1545
MseI TTAA 6 cut(s) 77, 513, 533, 575, 761, 951
MslI CAYNNNNRTG 3 cut(s) 133, 953, 1086
MspA1I CMGCKG 1 cut(s) 505
MspR9I CCNGG 3 cut(s) 374, 788, 1637
MvaI CCWGG 3 cut(s) 374, 788, 1637
MwoI GCNNNNNNNGC 1 cut(s) 383
NcoI CCATGG 1 cut(s) 526
NdeII GATC 5 cut(s) 67, 80, 820, 869, 959
NlaIII CATG 5 cut(s) 213, 470, 530, 542, 958
NlaIV GGNNCC 3 cut(s) 27, 772, 1287
NmeAIII GCCGAG 1 cut(s) 996
NmuCI GTSAC 2 cut(s) 407, 563
PagI TCATGA 1 cut(s) 538
PfeI GAWTC 2 cut(s) 274, 727
PflFI GACNNNGTC 1 cut(s) 1130
PkrI GCNGC 9 cut(s) 385, 388, 504, 879, 882, 993, 1114, 1465, 1476
PleI GAGTC 3 cut(s) 499, 613, 927
PpsI GAGTC 3 cut(s) 499, 613, 927
Psp6I CCWGG 3 cut(s) 372, 786, 1635
PspFI CCCAGC 2 cut(s) 377, 616
PspGI CCWGG 3 cut(s) 372, 786, 1635
PspN4I GGNNCC 3 cut(s) 27, 772, 1287
PstI CTGCAG 2 cut(s) 388, 868
PsuI RGATCY 2 cut(s) 67, 80
PsyI GACNNNGTC 1 cut(s) 1130
PvuII CAGCTG 1 cut(s) 505
RsaI GTAC 1 cut(s) 1620
RsaNI GTAC 1 cut(s) 1619
RseI CAYNNNNRTG 3 cut(s) 133, 953, 1086
SaqAI TTAA 6 cut(s) 77, 513, 533, 575, 761, 951
SatI GCNGC 9 cut(s) 384, 387, 503, 878, 881, 992, 1113, 1464, 1475
Sau3AI GATC 5 cut(s) 67, 80, 820, 869, 959
ScaI AGTACT 1 cut(s) 1620
SchI GAGTC 3 cut(s) 500, 614, 928
ScrFI CCNGG 3 cut(s) 374, 788, 1637
SduI GDGCHC 2 cut(s) 775, 1013
SfaNI GCATC 3 cut(s) 532, 622, 1486
SfcI CTRYAG 3 cut(s) 384, 555, 864
SmiMI CAYNNNNRTG 3 cut(s) 133, 953, 1086
Sse9I AATT 8 cut(s) 158, 416, 576, 932, 1062, 1324, 1352, 1557
SsiI CCGC 2 cut(s) 881, 1463
SspMI CTAG 5 cut(s) 390, 462, 522, 767, 1622
StyD4I CCNGG 3 cut(s) 372, 786, 1635
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 5 cut(s) 238, 827, 1130, 1571, 1580
TaiI ACGT 2 cut(s) 109, 1661
TaqII GACCGA 1 cut(s) 339
TasI AATT 8 cut(s) 158, 416, 576, 932, 1062, 1324, 1352, 1557
TatI WGTACW 1 cut(s) 1618
TauI GCSGC 2 cut(s) 883, 1466
TfiI GAWTC 2 cut(s) 274, 727
Tru1I TTAA 6 cut(s) 77, 513, 533, 575, 761, 951
Tru9I TTAA 6 cut(s) 77, 513, 533, 575, 761, 951
TseFI GTSAC 2 cut(s) 407, 563
TseI GCWGC 7 cut(s) 383, 386, 502, 877, 991, 1112, 1474
Tsp45I GTSAC 2 cut(s) 407, 563
TspDTI ATGAA 5 cut(s) 17, 740, 902, 993, 1056
Tth111I GACNNNGTC 1 cut(s) 1130
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 2 cut(s) 1062, 1352
XcmI CCANNNNNNNNNTGG 1 cut(s) 1352
XspI CTAG 5 cut(s) 390, 462, 522, 767, 1622
ZrmI AGTACT 1 cut(s) 1620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.