Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008037

Physical Location & Seq

Genomic Coordinates Forward (+)

4359930 .. 4361716

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG055300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGCAACCATCGTTGAACATTTCAACTGTGCTTACGAGCATTGGCTTAGTAGGGAGTTCAAATACAATAGACAAGCTTTTGACCAGAAAGCTCGGTCTATGACTGAGAAGTATGCCCAGGCTGGGGCTGCAGCTAGTGGGAGTAGTGTTTGTGACACTCAATTTCAAAGCCTTGCAAATCCAAGCGCACTGGAGGTGGAAACAACTAGCCATGAGTTGAAACACCAAGCTAATGAGTCTGTTGTGCAGCTGGAGGTTAAAACAACTAGCCATGGTTTAAATCATGATGCAAATCAGTCTGTAGCAAGTCACAAGAAGTTAATTGGGATTAGTAGGAAGCTGTCAGTGGAGTCTTCAGTCCCAGCCTGCGAAAGAGATGCTCGTAAGGAAGGGAGGGAAGTGCCTAAAGACCAGATGGAAGTTGAAGGAGCAGAAAAGTTGCTGAAAGATAATCCTGATAAGTTCAATATGAATCAGGAGAAGCTATGTGGGAGCAGATGGAAGTTAACGCTAGGAGCCCTCAGCCAATCCCAGGAGAAAAGTGAGAATGACATACAAAAGTTGGATCACTGTCCATCAGTTGAACTGCAAAACCTTCCTGTGCCATCTGCAGGATCACTGCTGCCGCTATCTGGAAACTCTTACAAGCAAGGACTTCATCCGAGTCAAGATAGTAAATTGGTAGATGACAACATTAACATGGGATCAAAGAGGCCGAGGCAGTTTGGGGACAAGCAGCCGTTGGGTTCATTGAGCACATCCCAAGTGATTAGTGAAAGTAAAGATGAAATGATTGTAACCCCTCAAATTCTGCCTTCTCATTCCCATATCAATGTGTTATCTGAGCCTTTGCCAGCAGCCCCAGTTGTTGACAGTGTCAAACGGCAACCAAATAAAGATATGATGGATGGAATGGGAAATGGCTCTATTGATACAAGTCGCAAGAGGCTTTGTTTAGCTGGCAAGAAGCTTTCACTTGGATTTAGAGGCTCATCGCAGACGCAGGGAAAGGATAACAAGGAGAATGTGGTGCCACAGAGGAGCGAGTATAATGGCAGTGTATCAAAGAATTGTGGTGAAAATGGAAGCCATAAGAAATTTGGGATTGCTCAGTTGGAAGAGAACAACAGCAATATACATCCACACCCCCATAGTGTCTTGTCATATCCATCCAAGTCCCTTCCTAAGCAACATCAGGACTTCAGGGCGGCTGAGAAGCAGCATCAAGATTACACTGACATTACTGGAGCAACTAAGCAAAAGAAAGGCAAAGAAACAGCAAGACCCGAGTGTGAGGCAGTAATTGTGTTGGACAGTGAAGACAGTGAGGAAGAAAAGACCATCCCTGCGAAATCTAAATCAGTACTAGCACGAAAGCGCCTGGGAAAGTGGAGAGTGAGAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

UQ_con

Protein Analysis

468

Amino Acids

51.74

Weight (kDa)

8.58

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24515 AT3G24515 AT3G24515 AT3G24515
fragaria_vesca	FvH4_1g04830 FvH4_1g04830 FvH4_4g32890
malus_domestica	MD08G1128600.v1.1 MD14G1109900.v1.1 MD15G1186000.v1.1
prunus_persica	Prupe.7G230900_v2.0.a1
pyrus_communis	pycom15g16670
rosa_chinensis	RchiOBHm_Chr2g0090471
rosa_laevigata	RLG00000016116
rosa_multiflora	Rmu_sc0004514.1_g000022 Rmu_sc0014034.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151110
rosa_rugosa	Rorug02G0008200 Rorug02G0008300
rosa_samantha	Rh2AG053700 Rh2BG053200 Rh2CG055300 Rh2DG053900
rosa_wichuraiana	Rw2G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1030
AciI	CCGC	2 cut(s)	626, 1208
AclWI	GGATC	3 cut(s)	573, 622, 712
AcsI	RAATTY	2 cut(s)	807, 1097
AcuI	CTGAAG	2 cut(s)	339, 1186
AfaI	GTAC	1 cut(s)	1365
AfiI	CCNNNNNNNGG	5 cut(s)	123, 124, 532, 611, 632
AgsI	TTSAA	8 cut(s)	17, 25, 61, 167, 220, 425, 466, 584
AjnI	CCWGG	3 cut(s)	117, 531, 1380
AluBI	AGCT	9 cut(s)	77, 92, 134, 230, 250, 340, 484, 959, 970
AluI	AGCT	9 cut(s)	77, 92, 134, 230, 250, 340, 484, 959, 970
Alw21I	GWGCWC	1 cut(s)	758
AlwI	GGATC	3 cut(s)	573, 622, 712
Ama87I	CYCGRG	1 cut(s)	1286
AoxI	GGCC	1 cut(s)	713
ApeKI	GCWGC	7 cut(s)	128, 131, 247, 622, 736, 857, 1219
ApoI	RAATTY	2 cut(s)	807, 1097
AspLEI	GCGC	2 cut(s)	188, 1380
AsuHPI	GGTGA	1 cut(s)	1088
AvaI	CYCGRG	1 cut(s)	1286
BanI	GGYRCC	1 cut(s)	1030
BanII	GRGCYC	1 cut(s)	520
BbsI	GAAGAC	2 cut(s)	345, 1326
Bbv12I	GWGCWC	1 cut(s)	758
BbvCI	CCTCAGC	1 cut(s)	521
BbvI	GCAGC	7 cut(s)	115, 143, 259, 609, 748, 869, 1231
BccI	CCATC	9 cut(s)	17, 409, 492, 583, 613, 898, 902, 1177, 1349
BceAI	ACGGC	2 cut(s)	724, 899
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	3 cut(s)	119, 533, 1382
BfaI	CTAG	5 cut(s)	135, 207, 267, 512, 1367
BfmI	CTRYAG	3 cut(s)	129, 300, 609
BfoI	RGCGCY	1 cut(s)	1381
BisI	GCNGC	9 cut(s)	129, 132, 248, 623, 626, 737, 858, 1209, 1220
BlsI	GCNGC	9 cut(s)	130, 133, 249, 624, 627, 738, 859, 1210, 1221
BmcAI	AGTACT	1 cut(s)	1365
Bme1390I	CCNGG	3 cut(s)	119, 533, 1382
BmeT110I	CYCGRG	1 cut(s)	1286
BmiI	GGNNCC	2 cut(s)	517, 1032
BmrFI	CCNGG	3 cut(s)	119, 533, 1382
BmrI	ACTGGG	1 cut(s)	857
BmsI	GCATC	3 cut(s)	277, 367, 1231
BmuI	ACTGGG	1 cut(s)	857
BpiI	GAAGAC	2 cut(s)	345, 1326
BpmI	CTGGAG	3 cut(s)	212, 272, 1266
Bpu10I	CCTNAGC	2 cut(s)	521, 1185
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	5 cut(s)	117, 271, 531, 716, 1381
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 124, 532, 611, 632
Bse1I	ACTGG	3 cut(s)	195, 863, 1249
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	3 cut(s)	119, 533, 1382
BseDI	CCNNGG	5 cut(s)	117, 271, 531, 716, 1381
BseGI	GGATG	6 cut(s)	658, 758, 913, 1138, 1169, 1341
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	5 cut(s)	123, 124, 532, 611, 632
BseMII	CTCAG	5 cut(s)	96, 535, 834, 1124, 1203
BseNI	ACTGG	3 cut(s)	195, 863, 1249
BseRI	GAGGAG	1 cut(s)	1054
BseXI	GCAGC	7 cut(s)	115, 143, 259, 609, 748, 869, 1231
BseYI	CCCAGC	2 cut(s)	122, 361
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	715
BshNI	GGYRCC	1 cut(s)	1030
BsiHKAI	GWGCWC	1 cut(s)	758
BsiHKCI	CYCGRG	1 cut(s)	1286
BslFI	GGGAC	3 cut(s)	344, 743, 1162
BslI	CCNNNNNNNGG	5 cut(s)	123, 124, 532, 611, 632
BsmFI	GGGAC	3 cut(s)	344, 743, 1162
BsnI	GGCC	1 cut(s)	715
BsoBI	CYCGRG	1 cut(s)	1286
Bsp1286I	GDGCHC	2 cut(s)	520, 758
Bsp143I	GATC	3 cut(s)	565, 614, 704
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	2 cut(s)	626, 1208
BspANI	GGCC	1 cut(s)	715
BspCNI	CTCAG	5 cut(s)	97, 534, 835, 1123, 1204
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	517, 1032
BspMAI	CTGCAG	2 cut(s)	133, 613
BspPI	GGATC	3 cut(s)	573, 622, 712
BspT107I	GGYRCC	1 cut(s)	1030
BsrI	ACTGG	3 cut(s)	195, 863, 1249
BssECI	CCNNGG	5 cut(s)	117, 271, 531, 716, 1381
BssMI	GATC	3 cut(s)	565, 614, 704
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	3 cut(s)	119, 533, 1382
Bst4CI	ACNGT	5 cut(s)	29, 572, 875, 1316, 1325
Bst6I	CTCTTC	1 cut(s)	1113
BstC8I	GCNNGC	3 cut(s)	367, 855, 961
BstDEI	CTNAG	8 cut(s)	47, 105, 521, 843, 1110, 1185, 1212, 1254
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	6 cut(s)	658, 758, 913, 1138, 1169, 1341
BstH2I	RGCGCY	1 cut(s)	1381
BstHHI	GCGC	2 cut(s)	188, 1380
BstKTI	GATC	3 cut(s)	568, 617, 707
BstMBI	GATC	3 cut(s)	565, 614, 704
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	3 cut(s)	119, 533, 1382
BstSCI	CCNGG	3 cut(s)	117, 531, 1380
BstSFI	CTRYAG	3 cut(s)	129, 300, 609
BstV1I	GCAGC	7 cut(s)	115, 143, 259, 609, 748, 869, 1231
BstV2I	GAAGAC	2 cut(s)	345, 1326
BsuRI	GGCC	1 cut(s)	715
BtgI	CCRYGG	1 cut(s)	271
BtgZI	GCGATG	1 cut(s)	978
BtsCI	GGATG	6 cut(s)	658, 758, 913, 1138, 1169, 1341
BtsI	GCAGTG	2 cut(s)	617, 1063
BtsIMutI	CAGTG	9 cut(s)	188, 351, 568, 617, 880, 1063, 1233, 1321, 1330
Cac8I	GCNNGC	3 cut(s)	367, 855, 961
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	2 cut(s)	188, 1380
CseI	GACGC	1 cut(s)	1009
Csp6I	GTAC	1 cut(s)	1364
CviAII	CATG	4 cut(s)	212, 272, 284, 700
CviQI	GTAC	1 cut(s)	1364
DdeI	CTNAG	8 cut(s)	47, 105, 521, 843, 1110, 1185, 1212, 1254
DpnI	GATC	3 cut(s)	567, 616, 706
DpnII	GATC	3 cut(s)	565, 614, 704
DraI	TTTAAA	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	1113
EarI	CTCTTC	1 cut(s)	1113
Eco130I	CCWWGG	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	520
Eco57I	CTGAAG	2 cut(s)	339, 1186
Eco88I	CYCGRG	1 cut(s)	1286
EcoRII	CCWGG	3 cut(s)	117, 531, 1380
EcoT14I	CCWWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	4 cut(s)	215, 275, 287, 703
FaqI	GGGAC	3 cut(s)	344, 743, 1162
FatI	CATG	4 cut(s)	211, 271, 283, 699
Fnu4HI	GCNGC	9 cut(s)	129, 132, 248, 623, 626, 737, 858, 1209, 1220
FokI	GGATG	6 cut(s)	645, 745, 920, 1125, 1156, 1328
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	9 cut(s)	129, 132, 248, 623, 626, 737, 858, 1209, 1220
FspBI	CTAG	5 cut(s)	135, 207, 267, 512, 1367
GlaI	GCGC	2 cut(s)	187, 1379
GluI	GCNGC	9 cut(s)	129, 132, 248, 623, 626, 737, 858, 1209, 1220
GsaI	CCCAGC	2 cut(s)	126, 365
GsuI	CTGGAG	3 cut(s)	212, 272, 1266
HaeII	RGCGCY	1 cut(s)	1381
HaeIII	GGCC	1 cut(s)	715
HgaI	GACGC	1 cut(s)	1009
HhaI	GCGC	2 cut(s)	188, 1380
Hin1II	CATG	4 cut(s)	215, 275, 287, 703
Hin6I	GCGC	2 cut(s)	186, 1378
HinP1I	GCGC	2 cut(s)	186, 1378
HincII	GTYRAC	2 cut(s)	507, 871
HindII	GTYRAC	2 cut(s)	507, 871
HindIII	AAGCTT	2 cut(s)	75, 968
HinfI	GANTC	4 cut(s)	236, 350, 472, 664
HpaI	GTTAAC	1 cut(s)	507
HphI	GGTGA	1 cut(s)	1088
Hpy166II	GTNNAC	2 cut(s)	507, 871
Hpy188I	TCNGA	2 cut(s)	663, 844
Hpy188III	TCNNGA	7 cut(s)	284, 455, 476, 633, 668, 1196, 1226
Hpy8I	GTNNAC	2 cut(s)	507, 871
HpyAV	CCTTC	5 cut(s)	383, 419, 605, 825, 1190
HpyCH4III	ACNGT	5 cut(s)	29, 572, 875, 1316, 1325
HpyCH4IV	ACGT	1 cut(s)	1403
HpyCH4V	TGCA	6 cut(s)	131, 176, 247, 290, 589, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	8 cut(s)	47, 105, 521, 843, 1110, 1185, 1212, 1254
HpySE526I	ACGT	1 cut(s)	1403
Hsp92II	CATG	4 cut(s)	215, 275, 287, 703
HspAI	GCGC	2 cut(s)	186, 1378
KspAI	GTTAAC	1 cut(s)	507
Kzo9I	GATC	3 cut(s)	565, 614, 704
LmnI	GCTCC	5 cut(s)	428, 492, 515, 1041, 1247
Lsp1109I	GCAGC	7 cut(s)	115, 143, 259, 609, 748, 869, 1231
LweI	GCATC	3 cut(s)	277, 367, 1231
MaeI	CTAG	5 cut(s)	135, 207, 267, 512, 1367
MaeII	ACGT	1 cut(s)	1403
MaeIII	GTNAC	3 cut(s)	152, 308, 796
MalI	GATC	3 cut(s)	567, 616, 706
MboI	GATC	3 cut(s)	565, 614, 704
MboII	GAAGA	4 cut(s)	345, 1130, 1331, 1343
MhlI	GDGCHC	2 cut(s)	520, 758
MluCI	AATT	7 cut(s)	161, 321, 677, 807, 1069, 1097, 1302
MlyI	GAGTC	3 cut(s)	245, 359, 673
MmeI	TCCRAC	3 cut(s)	543, 1095, 1290
MseI	TTAA	5 cut(s)	258, 278, 320, 506, 696
MslI	CAYNNNNRTG	2 cut(s)	698, 831
MspA1I	CMGCKG	1 cut(s)	250
MspR9I	CCNGG	3 cut(s)	119, 533, 1382
MvaI	CCWGG	3 cut(s)	119, 533, 1382
MwoI	GCNNNNNNNGC	1 cut(s)	128
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	3 cut(s)	565, 614, 704
NlaIII	CATG	4 cut(s)	215, 275, 287, 703
NlaIV	GGNNCC	2 cut(s)	517, 1032
NmeAIII	GCCGAG	1 cut(s)	741
NmuCI	GTSAC	2 cut(s)	152, 308
PagI	TCATGA	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	472
PflFI	GACNNNGTC	1 cut(s)	875
PkrI	GCNGC	9 cut(s)	130, 133, 249, 624, 627, 738, 859, 1210, 1221
PleI	GAGTC	3 cut(s)	244, 358, 672
PpsI	GAGTC	3 cut(s)	244, 358, 672
Psp6I	CCWGG	3 cut(s)	117, 531, 1380
PspFI	CCCAGC	2 cut(s)	122, 361
PspGI	CCWGG	3 cut(s)	117, 531, 1380
PspN4I	GGNNCC	2 cut(s)	517, 1032
PstI	CTGCAG	2 cut(s)	133, 613
PsyI	GACNNNGTC	1 cut(s)	875
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	1365
RsaNI	GTAC	1 cut(s)	1364
RseI	CAYNNNNRTG	2 cut(s)	698, 831
SaqAI	TTAA	5 cut(s)	258, 278, 320, 506, 696
SatI	GCNGC	9 cut(s)	129, 132, 248, 623, 626, 737, 858, 1209, 1220
Sau3AI	GATC	3 cut(s)	565, 614, 704
ScaI	AGTACT	1 cut(s)	1365
SchI	GAGTC	3 cut(s)	245, 359, 673
ScrFI	CCNGG	3 cut(s)	119, 533, 1382
SduI	GDGCHC	2 cut(s)	520, 758
SfaNI	GCATC	3 cut(s)	277, 367, 1231
SfcI	CTRYAG	3 cut(s)	129, 300, 609
SmiMI	CAYNNNNRTG	2 cut(s)	698, 831
Sse9I	AATT	7 cut(s)	161, 321, 677, 807, 1069, 1097, 1302
SsiI	CCGC	2 cut(s)	626, 1208
SspMI	CTAG	5 cut(s)	135, 207, 267, 512, 1367
StyD4I	CCNGG	3 cut(s)	117, 531, 1380
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	5 cut(s)	29, 572, 875, 1316, 1325
TaiI	ACGT	1 cut(s)	1406
TaqII	GACCGA	1 cut(s)	84
TasI	AATT	7 cut(s)	161, 321, 677, 807, 1069, 1097, 1302
TatI	WGTACW	1 cut(s)	1363
TauI	GCSGC	2 cut(s)	628, 1211
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	5 cut(s)	258, 278, 320, 506, 696
Tru9I	TTAA	5 cut(s)	258, 278, 320, 506, 696
TscAI	CASTG	9 cut(s)	195, 351, 575, 624, 880, 1063, 1240, 1321, 1330
TseFI	GTSAC	2 cut(s)	152, 308
TseI	GCWGC	7 cut(s)	128, 131, 247, 622, 736, 857, 1219
Tsp45I	GTSAC	2 cut(s)	152, 308
TspDTI	ATGAA	4 cut(s)	485, 647, 738, 801
TspRI	CASTG	9 cut(s)	195, 351, 575, 624, 880, 1063, 1240, 1321, 1330
Tth111I	GACNNNGTC	1 cut(s)	875
XapI	RAATTY	2 cut(s)	807, 1097
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1097
XspI	CTAG	5 cut(s)	135, 207, 267, 512, 1367
ZrmI	AGTACT	1 cut(s)	1365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.