Rmu_sc0004514.1_g000022

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004514.1
Physical Location & Seq
Forward (+)
92812 .. 94878
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004514.1_g000022.1.cds

Sequence Viewer

Length: 1620 bp
atggctcaagcggcgaggctcaacctccgattgcagaaagagctcaagctcctcctcaccgaccctcctcccggcgcctccttcccactcctctcctcatcctcctccttatccaccatcgacgcccgtaaccctctcaattcatccccttttgacttttctggagcatggcaaccatccttgaacatttcaactgtgcttacgagcattggcttgttattgagcgaaccgaatcctgatgatggccttatgtgtgaagcgagtagggagttcaaatacaatagacaagcttttgaccagaaagctcggtctatgactgagaagtatgcccaggctggggctgcagctagtgggagtagtgtttgtgacactcaatttcaaagccttgcaaatccaagcgcactggaggtggaaacaacaagccatgagtcgaaacaccaagctaatgagtctgttgtgcagctggaggttaaaacaactagccatggtttaaatcatgatgcaaatcagtctgttgcaagtcacaagaagttaattgggattagtaggaagctgtcactggagtcttcagtcccagcctgcgaaagagatgctcgtaaggaagggagggaagtgcctaaagaccagatggaagttgaaggagcagaaaagttgctgaaagataatcctgatgagttcaatatgaatcaggagaagctatgtgggagcagatggaagttatcgctaggagccctcagccaaacccaggagaaaagtgacaatgacatacagaagttggatcactgtccatcagttgaactgcaaaaccttcctgtgccatcttcaggatcactgctgccgctatccagaaactcttacaagcaaggacttcatccgagtcaagatagtaaattggtagatgacaacattaacatgggatcaaagaggccgaggcagtttggggacaagcagccgttgggttcattgagcacatcccaagtgattagtgaaagtaaagatgaaatgattgtaacccctcaaattctgccttctcattcccatatcaatgtgttatctgaacctttgccagcagccccagctctcgacagtgtcaaacggcaaccaaataaagatataatggatggaatgggaaatggctctattgatacaagtcgcaaaaggctttgtttagctggcaagaagctttcacttggatttagaggctcattgcagatgcagggaaaggataacaaggagaatgtggtgccacagatgagcgagtataatggcagtggatcaaagaatggtggtgaaaatggaagccataagaaatttgggattgctcagttggaagagaacaacagcaataagcatccacactcccataatatctcttcatatccatccaagtcccttcctaggcaacatcaggacttcagggcggctgagaagcaccatcaagattacactaacattactggagcacctaagcagaagaaaggcaaagaaacagcaagacccgagtgtgaggcagtaattgtgttggacagtgaagacagcgaggaagaaaagaccatccctgcgaaatctaaatcagtactagcacgaaagcgcctgggaaagtggagagtaagaaagtga

Protein Analysis

539

Amino Acids

59.09

Weight (kDa)

8.61

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 74, 1243
AciI CCGC 3 cut(s) 11, 839, 1421
AclWI GGATC 4 cut(s) 786, 835, 925, 1282
AcsI RAATTY 2 cut(s) 1020, 1310
AcuI CTGAAG 3 cut(s) 552, 807, 1399
AcyI GRCGYC 2 cut(s) 75, 123
AfaI GTAC 1 cut(s) 1578
AfiI CCNNNNNNNGG 7 cut(s) 71, 242, 336, 337, 745, 824, 1398
AgsI TTSAA 7 cut(s) 184, 192, 274, 380, 638, 679, 797
AjnI CCWGG 3 cut(s) 330, 744, 1593
Alw21I GWGCWC 3 cut(s) 45, 971, 1465
AlwI GGATC 4 cut(s) 786, 835, 925, 1282
Ama87I CYCGRG 1 cut(s) 1499
AoxI GGCC 2 cut(s) 244, 926
ApeKI GCWGC 6 cut(s) 341, 344, 460, 835, 949, 1070
ApoI RAATTY 2 cut(s) 1020, 1310
AspA2I CCTAGG 1 cut(s) 1397
AspLEI GCGC 3 cut(s) 77, 401, 1593
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 49, 1301
AvaI CYCGRG 1 cut(s) 1499
AvrII CCTAGG 1 cut(s) 1397
BanI GGYRCC 2 cut(s) 74, 1243
BanII GRGCYC 2 cut(s) 45, 733
BbsI GAAGAC 2 cut(s) 558, 1539
Bbv12I GWGCWC 3 cut(s) 45, 971, 1465
BbvCI CCTCAGC 1 cut(s) 734
BbvI GCAGC 6 cut(s) 328, 356, 472, 822, 961, 1082
BceAI ACGGC 2 cut(s) 937, 1112
BcgI CGANNNNNNTGC 2 cut(s) 572, 606
BciT130I CCWGG 3 cut(s) 332, 746, 1595
BcnI CCSGG 1 cut(s) 72
BfaI CTAG 5 cut(s) 348, 480, 725, 1398, 1580
BfmI CTRYAG 1 cut(s) 342
BfoI RGCGCY 2 cut(s) 78, 1594
BisI GCNGC 9 cut(s) 12, 342, 345, 461, 836, 839, 950, 1071, 1422
BlnI CCTAGG 1 cut(s) 1397
BlsI GCNGC 9 cut(s) 13, 343, 346, 462, 837, 840, 951, 1072, 1423
BmcAI AGTACT 1 cut(s) 1578
Bme1390I CCNGG 4 cut(s) 72, 332, 746, 1595
BmeT110I CYCGRG 1 cut(s) 1499
BmiI GGNNCC 3 cut(s) 76, 730, 1245
BmrFI CCNGG 4 cut(s) 72, 332, 746, 1595
BmsI GCATC 4 cut(s) 490, 580, 1203, 1360
BpiI GAAGAC 2 cut(s) 558, 1539
BpmI CTGGAG 5 cut(s) 183, 425, 485, 581, 1479
Bpu10I CCTNAGC 2 cut(s) 734, 1467
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 504
BsaHI GRCGYC 2 cut(s) 75, 123
BsaJI CCNNGG 6 cut(s) 330, 484, 744, 929, 1397, 1594
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 7 cut(s) 71, 242, 336, 337, 745, 824, 1398
Bse1I ACTGG 3 cut(s) 408, 564, 1462
Bse3DI GCAATG 1 cut(s) 1205
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 3 cut(s) 332, 746, 1595
BseDI CCNNGG 6 cut(s) 330, 484, 744, 929, 1397, 1594
BseGI GGATG 9 cut(s) 98, 143, 176, 871, 971, 1126, 1351, 1382, 1554
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 7 cut(s) 71, 242, 336, 337, 745, 824, 1398
BseMI GCAATG 1 cut(s) 1205
BseMII CTCAG 4 cut(s) 309, 748, 1337, 1416
BseNI ACTGG 3 cut(s) 408, 564, 1462
BseRI GAGGAG 6 cut(s) 41, 44, 57, 80, 85, 94
BseXI GCAGC 6 cut(s) 328, 356, 472, 822, 961, 1082
BseYI CCCAGC 3 cut(s) 335, 574, 1075
BsgI GTGCAG 1 cut(s) 479
BshFI GGCC 2 cut(s) 246, 928
BshNI GGYRCC 2 cut(s) 74, 1243
BsiHKAI GWGCWC 3 cut(s) 45, 971, 1465
BsiHKCI CYCGRG 1 cut(s) 1499
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 3 cut(s) 557, 956, 1375
BslI CCNNNNNNNGG 7 cut(s) 71, 242, 336, 337, 745, 824, 1398
BsmFI GGGAC 3 cut(s) 557, 956, 1375
BsnI GGCC 2 cut(s) 246, 928
BsoBI CYCGRG 1 cut(s) 1499
Bsp1286I GDGCHC 4 cut(s) 45, 733, 971, 1465
Bsp143I GATC 4 cut(s) 778, 827, 917, 1274
Bsp19I CCATGG 1 cut(s) 484
BspACI CCGC 3 cut(s) 11, 839, 1421
BspANI GGCC 2 cut(s) 246, 928
BspCNI CTCAG 4 cut(s) 310, 747, 1336, 1417
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 3 cut(s) 76, 730, 1245
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 4 cut(s) 786, 835, 925, 1282
BspT107I GGYRCC 2 cut(s) 74, 1243
BsrDI GCAATG 1 cut(s) 1205
BsrI ACTGG 3 cut(s) 408, 564, 1462
BssECI CCNNGG 6 cut(s) 330, 484, 744, 929, 1397, 1594
BssMI GATC 4 cut(s) 778, 827, 917, 1274
BssNI GRCGYC 2 cut(s) 75, 123
BssT1I CCWWGG 2 cut(s) 484, 1397
Bst2UI CCWGG 3 cut(s) 332, 746, 1595
Bst4CI ACNGT 4 cut(s) 196, 785, 1088, 1529
Bst6I CTCTTC 2 cut(s) 1326, 1378
BstACI GRCGYC 2 cut(s) 75, 123
BstC8I GCNNGC 3 cut(s) 580, 1068, 1174
BstDEI CTNAG 5 cut(s) 318, 734, 1323, 1425, 1467
BstDSI CCRYGG 1 cut(s) 484
BstF5I GGATG 9 cut(s) 98, 143, 176, 871, 971, 1126, 1351, 1382, 1554
BstH2I RGCGCY 2 cut(s) 78, 1594
BstHHI GCGC 3 cut(s) 77, 401, 1593
BstKTI GATC 4 cut(s) 781, 830, 920, 1277
BstMBI GATC 4 cut(s) 778, 827, 917, 1274
BstMWI GCNNNNNNNGC 4 cut(s) 11, 40, 341, 1076
BstNI CCWGG 3 cut(s) 332, 746, 1595
BstSCI CCNGG 4 cut(s) 70, 330, 744, 1593
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 6 cut(s) 328, 356, 472, 822, 961, 1082
BstV2I GAAGAC 2 cut(s) 558, 1539
BsuRI GGCC 2 cut(s) 246, 928
BtgI CCRYGG 1 cut(s) 484
BtsCI GGATG 9 cut(s) 98, 143, 176, 871, 971, 1126, 1351, 1382, 1554
BtsI GCAGTG 2 cut(s) 830, 1276
BtsIMutI CAGTG 7 cut(s) 401, 557, 781, 830, 1093, 1276, 1534
Cac8I GCNNGC 3 cut(s) 580, 1068, 1174
CciI TCATGA 1 cut(s) 496
CfoI GCGC 3 cut(s) 77, 401, 1593
CseI GACGC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 1577
CviAII CATG 5 cut(s) 168, 425, 485, 497, 913
CviQI GTAC 1 cut(s) 1577
DdeI CTNAG 5 cut(s) 318, 734, 1323, 1425, 1467
DinI GGCGCC 1 cut(s) 76
DpnI GATC 4 cut(s) 780, 829, 919, 1276
DpnII GATC 4 cut(s) 778, 827, 917, 1274
DraI TTTAAA 1 cut(s) 492
Eam1104I CTCTTC 2 cut(s) 1326, 1378
EarI CTCTTC 2 cut(s) 1326, 1378
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 484, 1397
Eco24I GRGCYC 2 cut(s) 45, 733
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 3 cut(s) 552, 807, 1399
Eco88I CYCGRG 1 cut(s) 1499
EcoICRI GAGCTC 1 cut(s) 43
EcoRII CCWGG 3 cut(s) 330, 744, 1593
EcoT14I CCWWGG 2 cut(s) 484, 1397
EcoT38I GRGCYC 2 cut(s) 45, 733
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
ErhI CCWWGG 2 cut(s) 484, 1397
FaeI CATG 5 cut(s) 171, 428, 488, 500, 916
FaqI GGGAC 3 cut(s) 557, 956, 1375
FatI CATG 5 cut(s) 167, 424, 484, 496, 912
Fnu4HI GCNGC 9 cut(s) 12, 342, 345, 461, 836, 839, 950, 1071, 1422
FokI GGATG 9 cut(s) 85, 130, 163, 858, 958, 1133, 1338, 1369, 1541
FriOI GRGCYC 2 cut(s) 45, 733
Fsp4HI GCNGC 9 cut(s) 12, 342, 345, 461, 836, 839, 950, 1071, 1422
FspBI CTAG 5 cut(s) 348, 480, 725, 1398, 1580
GlaI GCGC 3 cut(s) 76, 400, 1592
GluI GCNGC 9 cut(s) 12, 342, 345, 461, 836, 839, 950, 1071, 1422
GsaI CCCAGC 3 cut(s) 339, 578, 1079
GsuI CTGGAG 5 cut(s) 183, 425, 485, 581, 1479
HaeII RGCGCY 2 cut(s) 78, 1594
HaeIII GGCC 2 cut(s) 246, 928
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 131
HhaI GCGC 3 cut(s) 77, 401, 1593
Hin1I GRCGYC 2 cut(s) 75, 123
Hin1II CATG 5 cut(s) 171, 428, 488, 500, 916
Hin6I GCGC 3 cut(s) 75, 399, 1591
HinP1I GCGC 3 cut(s) 75, 399, 1591
HindIII AAGCTT 2 cut(s) 288, 1181
HinfI GANTC 6 cut(s) 232, 428, 449, 563, 685, 877
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 49, 1301
Hpy188I TCNGA 3 cut(s) 29, 876, 1057
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 6 cut(s) 91, 596, 632, 818, 1038, 1403
HpyCH4III ACNGT 4 cut(s) 196, 785, 1088, 1529
HpyCH4V TGCA 9 cut(s) 34, 344, 389, 460, 503, 518, 802, 1210, 1216
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 40, 341, 1076
HpyF3I CTNAG 5 cut(s) 318, 734, 1323, 1425, 1467
Hsp92I GRCGYC 2 cut(s) 75, 123
Hsp92II CATG 5 cut(s) 171, 428, 488, 500, 916
HspAI GCGC 3 cut(s) 75, 399, 1591
KasI GGCGCC 1 cut(s) 74
Kzo9I GATC 4 cut(s) 778, 827, 917, 1274
LmnI GCTCC 6 cut(s) 54, 164, 641, 705, 728, 1460
Lsp1109I GCAGC 6 cut(s) 328, 356, 472, 822, 961, 1082
LweI GCATC 4 cut(s) 490, 580, 1203, 1360
MaeI CTAG 5 cut(s) 348, 480, 725, 1398, 1580
MaeIII GTNAC 6 cut(s) 128, 365, 521, 555, 755, 1009
MalI GATC 4 cut(s) 780, 829, 919, 1276
MboI GATC 4 cut(s) 778, 827, 917, 1274
MboII GAAGA 7 cut(s) 558, 813, 1343, 1365, 1486, 1544, 1556
MhlI GDGCHC 4 cut(s) 45, 733, 971, 1465
MluCI AATT 7 cut(s) 139, 374, 534, 890, 1020, 1310, 1515
Mly113I GGCGCC 1 cut(s) 75
MlyI GAGTC 4 cut(s) 437, 458, 572, 886
MmeI TCCRAC 3 cut(s) 756, 1308, 1503
MseI TTAA 4 cut(s) 471, 491, 533, 909
MslI CAYNNNNRTG 2 cut(s) 911, 1044
MspA1I CMGCKG 1 cut(s) 463
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 4 cut(s) 72, 332, 746, 1595
MvaI CCWGG 3 cut(s) 332, 746, 1595
MwoI GCNNNNNNNGC 4 cut(s) 11, 40, 341, 1076
NarI GGCGCC 1 cut(s) 75
NciI CCSGG 1 cut(s) 72
NcoI CCATGG 1 cut(s) 484
NdeII GATC 4 cut(s) 778, 827, 917, 1274
NlaIII CATG 5 cut(s) 171, 428, 488, 500, 916
NlaIV GGNNCC 3 cut(s) 76, 730, 1245
NmeAIII GCCGAG 1 cut(s) 954
NmuCI GTSAC 4 cut(s) 365, 521, 555, 755
PagI TCATGA 1 cut(s) 496
PfeI GAWTC 2 cut(s) 232, 685
PflFI GACNNNGTC 1 cut(s) 1088
PkrI GCNGC 9 cut(s) 13, 343, 346, 462, 837, 840, 951, 1072, 1423
PleI GAGTC 4 cut(s) 436, 457, 571, 885
PluTI GGCGCC 1 cut(s) 78
PpsI GAGTC 4 cut(s) 436, 457, 571, 885
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 3 cut(s) 330, 744, 1593
PspFI CCCAGC 3 cut(s) 335, 574, 1075
PspGI CCWGG 3 cut(s) 330, 744, 1593
PspN4I GGNNCC 3 cut(s) 76, 730, 1245
PstI CTGCAG 1 cut(s) 346
PsyI GACNNNGTC 1 cut(s) 1088
PvuII CAGCTG 1 cut(s) 463
RsaI GTAC 1 cut(s) 1578
RsaNI GTAC 1 cut(s) 1577
RseI CAYNNNNRTG 2 cut(s) 911, 1044
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 4 cut(s) 471, 491, 533, 909
SatI GCNGC 9 cut(s) 12, 342, 345, 461, 836, 839, 950, 1071, 1422
Sau3AI GATC 4 cut(s) 778, 827, 917, 1274
ScaI AGTACT 1 cut(s) 1578
SchI GAGTC 4 cut(s) 437, 458, 572, 886
ScrFI CCNGG 4 cut(s) 72, 332, 746, 1595
SduI GDGCHC 4 cut(s) 45, 733, 971, 1465
SfaNI GCATC 4 cut(s) 490, 580, 1203, 1360
SfcI CTRYAG 1 cut(s) 342
SfoI GGCGCC 1 cut(s) 76
SmiMI CAYNNNNRTG 2 cut(s) 911, 1044
SmlI CTYRAG 2 cut(s) 6, 44
SmoI CTYRAG 2 cut(s) 6, 44
Sse9I AATT 7 cut(s) 139, 374, 534, 890, 1020, 1310, 1515
SsiI CCGC 3 cut(s) 11, 839, 1421
SspDI GGCGCC 1 cut(s) 74
SspMI CTAG 5 cut(s) 348, 480, 725, 1398, 1580
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 4 cut(s) 70, 330, 744, 1593
StyI CCWWGG 2 cut(s) 484, 1397
TaaI ACNGT 4 cut(s) 196, 785, 1088, 1529
TaqI TCGA 3 cut(s) 120, 431, 1083
TaqII GACCGA 1 cut(s) 297
TasI AATT 7 cut(s) 139, 374, 534, 890, 1020, 1310, 1515
TatI WGTACW 1 cut(s) 1576
TauI GCSGC 3 cut(s) 14, 841, 1424
TfiI GAWTC 2 cut(s) 232, 685
Tru1I TTAA 4 cut(s) 471, 491, 533, 909
Tru9I TTAA 4 cut(s) 471, 491, 533, 909
TscAI CASTG 7 cut(s) 408, 564, 788, 837, 1093, 1276, 1534
TseFI GTSAC 4 cut(s) 365, 521, 555, 755
TseI GCWGC 6 cut(s) 341, 344, 460, 835, 949, 1070
Tsp45I GTSAC 4 cut(s) 365, 521, 555, 755
TspDTI ATGAA 6 cut(s) 132, 698, 860, 951, 1014, 1365
TspRI CASTG 7 cut(s) 408, 564, 788, 837, 1093, 1276, 1534
Tth111I GACNNNGTC 1 cut(s) 1088
XapI RAATTY 2 cut(s) 1020, 1310
XcmI CCANNNNNNNNNTGG 1 cut(s) 1310
XmaJI CCTAGG 1 cut(s) 1397
XspI CTAG 5 cut(s) 348, 480, 725, 1398, 1580
ZrmI AGTACT 1 cut(s) 1578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.