Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008037

Physical Location & Seq

Genomic Coordinates Forward (+)

12066743 .. 12067432

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1128600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCATCTACGACACCTGCTGCAGGTCCCTCGTCACCATAGCAATCTCTTTGCGACCCAGGCTCTTCTTCTCTTCTTCTGCCTAACGCCAGCATCTCCTCCCTCACCACCATCGATGCCCAGATCAAAGGTCCAGAAGGAATCGTGTACGCCGAAAGGTTCTTCAACATTAAGATTCAGATACCCGAGGTACCCGTTTCAGCCTCTGAGTGTGACATTTACGACGCCAATTTACCACCCGAATATCGACATTGGAGGCTGGATTTGCCTCGACATTCTCAATCTTCCTCCGAATGAGGCATGGCAACCATCATTGAATATTTCAACTGTGCTTACAAGCATTGGGTTGTTATTGAGTGAACCCAATCCGAATGATGGCCTTATGTGTGAAGCGAGTAGGGAATTCAAATACAATAGGCAAGCTTTCGACCAGAAAGCTCGATCTATGACTCAGAAATATGCCCAGGCTTCCGCTTCTGGGAGTGTTTGTGACTCTCAATCTCAACCTCCAAGCAGCGCAAATCCACTCACGGTGCTGCTGGAGGTAAAAGCTTCAATCCATGAGTCAAAACATGAAGTAGAGGAGTCTTCTGTGAGTAGTAATAAGAAGGTAATTAGGGGTAGTAGGAAGCTGTCGCTGGAGTGTTCAGGCCAAATCCAGAAAAATGGATGTTTGCGGGAAAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

UQ_con

Protein Analysis

230

Amino Acids

25.5

Weight (kDa)

9.33

Isoelectric Point (pI)

68.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	62 - 148	3e-25	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24515 AT3G24515 AT3G24515 AT3G24515
fragaria_vesca	FvH4_1g04830 FvH4_1g04830 FvH4_4g32890
malus_domestica	MD08G1128600.v1.1 MD14G1109900.v1.1 MD15G1186000.v1.1
prunus_persica	Prupe.7G230900_v2.0.a1
pyrus_communis	pycom15g16670
rosa_chinensis	RchiOBHm_Chr2g0090471
rosa_laevigata	RLG00000016116
rosa_multiflora	Rmu_sc0004514.1_g000022 Rmu_sc0014034.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151110
rosa_rugosa	Rorug02G0008200 Rorug02G0008300
rosa_samantha	Rh2AG053700 Rh2BG053200 Rh2CG055300 Rh2DG053900
rosa_wichuraiana	Rw2G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	24
Acc36I	ACCTGC	2 cut(s)	13, 24
Acc65I	GGTACC	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	189
AciI	CCGC	2 cut(s)	471, 676
AcsI	RAATTY	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	2 cut(s)	148, 191
AfiI	CCNNNNNNNGG	3 cut(s)	22, 374, 477
AgsI	TTSAA	5 cut(s)	165, 316, 324, 406, 555
AjnI	CCWGG	2 cut(s)	57, 462
AluBI	AGCT	4 cut(s)	422, 437, 551, 631
AluI	AGCT	4 cut(s)	422, 437, 551, 631
AlwNI	CAGNNNCTG	1 cut(s)	205
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	2 cut(s)	376, 649
ApeKI	GCWGC	3 cut(s)	19, 513, 535
ApoI	RAATTY	1 cut(s)	401
Asp718I	GGTACC	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	2 cut(s)	25, 130
AsuHPI	GGTGA	2 cut(s)	26, 96
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	2 cut(s)	25, 130
BanI	GGYRCC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	579
BbvI	GCAGC	3 cut(s)	6, 522, 525
BccI	CCATC	3 cut(s)	118, 316, 368
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	2 cut(s)	59, 464
BfmI	CTRYAG	1 cut(s)	20
BfuAI	ACCTGC	2 cut(s)	13, 24
BisI	GCNGC	3 cut(s)	20, 514, 536
BlsI	GCNGC	3 cut(s)	21, 515, 537
Bme1390I	CCNGG	2 cut(s)	59, 464
Bme18I	GGWCC	2 cut(s)	25, 130
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	25, 130
BmiI	GGNNCC	2 cut(s)	27, 191
BmrFI	CCNGG	2 cut(s)	59, 464
BmsI	GCATC	3 cut(s)	13, 101, 105
BpiI	GAAGAC	1 cut(s)	579
BpmI	CTGGAG	2 cut(s)	560, 659
Bsa29I	ATCGAT	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	3 cut(s)	57, 185, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 374, 477
BseBI	CCWGG	2 cut(s)	59, 464
BseCI	ATCGAT	1 cut(s)	113
BseDI	CCNNGG	3 cut(s)	57, 185, 462
BseGI	GGATG	1 cut(s)	674
BseLI	CCNNNNNNNGG	3 cut(s)	22, 374, 477
BseMII	CTCAG	2 cut(s)	197, 464
BseRI	GAGGAG	2 cut(s)	87, 596
BseXI	GCAGC	3 cut(s)	6, 522, 525
BshFI	GGCC	2 cut(s)	378, 651
BshNI	GGYRCC	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	3 cut(s)	22, 374, 477
BsmFI	GGGAC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	378, 651
BsoBI	CYCGRG	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	122, 440
BspACI	CCGC	2 cut(s)	471, 676
BspANI	GGCC	2 cut(s)	378, 651
BspCNI	CTCAG	2 cut(s)	198, 463
BspDI	ATCGAT	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	27, 191
BspMAI	CTGCAG	1 cut(s)	24
BspMI	ACCTGC	2 cut(s)	13, 24
BspQI	GCTCTTC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	189
BssECI	CCNNGG	3 cut(s)	57, 185, 462
BssMI	GATC	2 cut(s)	122, 440
BssNI	GRCGYC	1 cut(s)	224
Bst2UI	CCWGG	2 cut(s)	59, 464
Bst4CI	ACNGT	2 cut(s)	328, 532
Bst6I	CTCTTC	2 cut(s)	69, 77
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	90, 420
BstDEI	CTNAG	2 cut(s)	206, 450
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	674
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	2 cut(s)	125, 443
BstMBI	GATC	2 cut(s)	122, 440
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 264
BstNI	CCWGG	2 cut(s)	59, 464
BstSCI	CCNGG	2 cut(s)	57, 462
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	3 cut(s)	6, 522, 525
BstV2I	GAAGAC	1 cut(s)	579
BstXI	CCANNNNNNTGG	1 cut(s)	665
Bsu15I	ATCGAT	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	378, 651
BsuTUI	ATCGAT	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	674
BveI	ACCTGC	2 cut(s)	13, 24
Cac8I	GCNNGC	2 cut(s)	90, 420
CaiI	CAGNNNCTG	1 cut(s)	205
CfoI	GCGC	1 cut(s)	518
Cfr13I	GGNCC	2 cut(s)	25, 130
ClaI	ATCGAT	1 cut(s)	113
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	147, 190
CviAII	CATG	3 cut(s)	300, 560, 572
CviQI	GTAC	2 cut(s)	147, 190
DdeI	CTNAG	2 cut(s)	206, 450
DpnI	GATC	2 cut(s)	124, 442
DpnII	GATC	2 cut(s)	122, 440
Eam1104I	CTCTTC	2 cut(s)	69, 77
EarI	CTCTTC	2 cut(s)	69, 77
Eco47I	GGWCC	2 cut(s)	25, 130
Eco88I	CYCGRG	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	57, 462
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	303, 563, 575
FaiI	YATR	7 cut(s)	39, 301, 383, 446, 459, 561, 573
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	3 cut(s)	299, 559, 571
FauI	CCCGC	1 cut(s)	669
Fnu4HI	GCNGC	3 cut(s)	20, 514, 536
FokI	GGATG	1 cut(s)	681
Fsp4HI	GCNGC	3 cut(s)	20, 514, 536
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	3 cut(s)	20, 514, 536
GsuI	CTGGAG	2 cut(s)	560, 659
HaeIII	GGCC	2 cut(s)	378, 651
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	518
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	303, 563, 575
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HindIII	AAGCTT	2 cut(s)	420, 549
HinfI	GANTC	6 cut(s)	140, 174, 448, 491, 563, 584
HphI	GGTGA	2 cut(s)	26, 96
Hpy166II	GTNNAC	2 cut(s)	147, 359
Hpy188I	TCNGA	5 cut(s)	179, 207, 291, 369, 453
Hpy188III	TCNNGA	2 cut(s)	133, 658
Hpy8I	GTNNAC	2 cut(s)	147, 359
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	130, 601
HpyCH4III	ACNGT	2 cut(s)	328, 532
HpyCH4V	TGCA	2 cut(s)	4, 22
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 264
HpyF3I	CTNAG	2 cut(s)	206, 450
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	3 cut(s)	303, 563, 575
HspAI	GCGC	1 cut(s)	516
KpnI	GGTACC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	122, 440
LguI	GCTCTTC	1 cut(s)	69
Lsp1109I	GCAGC	3 cut(s)	6, 522, 525
LweI	GCATC	3 cut(s)	13, 101, 105
MaeIII	GTNAC	3 cut(s)	32, 211, 488
MalI	GATC	2 cut(s)	124, 442
MboI	GATC	2 cut(s)	122, 440
MboII	GAAGA	7 cut(s)	56, 59, 64, 67, 153, 275, 579
MluCI	AATT	3 cut(s)	228, 401, 612
MlyI	GAGTC	4 cut(s)	442, 485, 572, 593
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	59, 464
MvaI	CCWGG	2 cut(s)	59, 464
MwoI	GCNNNNNNNGC	2 cut(s)	59, 264
NdeII	GATC	2 cut(s)	122, 440
NlaIII	CATG	3 cut(s)	303, 563, 575
NlaIV	GGNNCC	2 cut(s)	27, 191
NmuCI	GTSAC	3 cut(s)	32, 211, 488
NsiI	ATGCAT	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	140, 174
PkrI	GCNGC	3 cut(s)	21, 515, 537
PleI	GAGTC	4 cut(s)	442, 485, 571, 592
PpsI	GAGTC	4 cut(s)	442, 485, 571, 592
PpuMI	RGGWCCY	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	57, 462
PspGI	CCWGG	2 cut(s)	57, 462
PspN4I	GGNNCC	2 cut(s)	27, 191
PspPI	GGNCC	2 cut(s)	25, 130
PspPPI	RGGWCCY	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	148, 191
RsaNI	GTAC	2 cut(s)	147, 190
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	3 cut(s)	20, 514, 536
Sau3AI	GATC	2 cut(s)	122, 440
Sau96I	GGNCC	2 cut(s)	25, 130
SchI	GAGTC	4 cut(s)	442, 485, 572, 593
ScrFI	CCNGG	2 cut(s)	59, 464
SfaNI	GCATC	3 cut(s)	13, 101, 105
SfcI	CTRYAG	1 cut(s)	20
SinI	GGWCC	2 cut(s)	25, 130
Sse9I	AATT	3 cut(s)	228, 401, 612
SsiI	CCGC	2 cut(s)	471, 676
SspI	AATATT	1 cut(s)	319
StyD4I	CCNGG	2 cut(s)	57, 462
TaaI	ACNGT	2 cut(s)	328, 532
TaqI	TCGA	5 cut(s)	113, 246, 270, 426, 439
TasI	AATT	3 cut(s)	228, 401, 612
TfiI	GAWTC	2 cut(s)	140, 174
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TseFI	GTSAC	3 cut(s)	32, 211, 488
TseI	GCWGC	3 cut(s)	19, 513, 535
Tsp45I	GTSAC	3 cut(s)	32, 211, 488
TspDTI	ATGAA	1 cut(s)	588
VpaK11BI	GGWCC	2 cut(s)	25, 130
XagI	CCTNNNNNAGG	1 cut(s)	20
XapI	RAATTY	1 cut(s)	401
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.