Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008037

Physical Location & Seq

Genomic Coordinates Forward (+)

713473 .. 716105

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0008300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCAAGCAGCGAACAAGAGCGATCGGCAACAAACTCAGCGCCGCCGGACGAGTCGCTGCGAATGGCGGTGGCCATCTCACTTCTCCGATCAAAGCTTCTCCAAAAGCAAAGCCACTCTTCTCCTTCTCAAAACTCCGACGCTCTCCGATGGAAGCGGAAGGCCAAGGAGCGGAAGCAAGAGCTTCTGAGACTCCGGCAAGATCTGAAAGAAGCCGAAGATGCTTCGCAGTGCGACCTGTTTCCGCAAAGCGCTTCCTGCAAGTGCTATTTCTTCGACAATTTGGGGAAGCTGAGCCCGAATCGGCTGCCGGAAGCTTCTCAGTGCAGATTCAATGACGTCTTGCGACGCCGATTTCTCAGACACGTGCGTTTCAAGGAAAGGAGAAGAAGAACCGGCGGTTCTTCCCAGCGTTACCACATTTCAGACATGAACAGTGAAGATGAAATGGAGCTGCTTAGGGCCTCAGTTGACTTTCTTGTGGAGCTTTGTGAAACCGGTTCTCCAGTGGAGGAGGCTAGTTTTTTGAATTGGTCACACCAAGCGGTAGATTTTATTTTAGCTTCATTGAAGAATCTGTTATCAACTGCAAAGAACGTAGACCTCATAGAAGGAATTGTCAGCAGCTTAATCACACGTATGATTACAAGGGTGTGTTGCCCCTTGCAAGGAAATGCATCAAAACAATCAGACTCTGATGCGCAGTTCTTCGTCCAGCACTTGATACGAAAACTTGGTACCGATCCCTACATTGGACAACGTGCACTTTTTGCAGTTTCTCAGAGAGTCTCCATTCTGGCAGAGAGTTTCCTTTTCTCAGATCCATTTGATGATGCTTTTACAAACATGCATCAATGCATGTTCATACTGATCCAGCTTATTGAGTTTTTGGTGTCTGATTACTTATCAGTATGGTCAAAGGATGAAGGTTTTGACACTGTGCTTTTCGAAGAGTGGGTGGCATCAGTTCTTCATGCTCGTAAAGCATTGGAAGTTTTGGAAAGCAGAAATGGGCTATATGCGTTATACATGGATCGAGTCATAGGTGAATTGGCCAAGCATGTGAGCCTTACTATGTCACTGCAGAAGATCAAACGTGAAATTTTAGATAAGCTATTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

UQ_con

Protein Analysis

374

Amino Acids

42.87

Weight (kDa)

7.61

Isoelectric Point (pI)

65.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24515 AT3G24515 AT3G24515 AT3G24515
fragaria_vesca	FvH4_1g04830 FvH4_1g04830 FvH4_4g32890
malus_domestica	MD08G1128600.v1.1 MD14G1109900.v1.1 MD15G1186000.v1.1
prunus_persica	Prupe.7G230900_v2.0.a1
pyrus_communis	pycom15g16670
rosa_chinensis	RchiOBHm_Chr2g0090471
rosa_laevigata	RLG00000016116
rosa_multiflora	Rmu_sc0004514.1_g000022 Rmu_sc0014034.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151110
rosa_rugosa	Rorug02G0008200 Rorug02G0008300
rosa_samantha	Rh2AG053700 Rh2BG053200 Rh2CG055300 Rh2DG053900
rosa_wichuraiana	Rw2G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
Acc16I	TGCGCA	1 cut(s)	702
Acc65I	GGTACC	1 cut(s)	737
AccB1I	GGYRCC	1 cut(s)	737
AccBSI	CCGCTC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	7 cut(s)	44, 68, 157, 172, 245, 399, 545
AclWI	GGATC	4 cut(s)	737, 815, 865, 1041
AcoI	YGGCCR	2 cut(s)	72, 1053
AcsI	RAATTY	1 cut(s)	1101
AcvI	CACGTG	1 cut(s)	367
AcyI	GRCGYC	2 cut(s)	339, 349
AfaI	GTAC	1 cut(s)	739
AfeI	AGCGCT	1 cut(s)	253
AfiI	CCNNNNNNNGG	3 cut(s)	171, 668, 752
AflIII	ACRYGT	2 cut(s)	364, 635
AgeI	ACCGGT	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	334, 376, 529, 571
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	2 cut(s)	184, 793
Alw44I	GTGCAC	1 cut(s)	762
AlwI	GGATC	4 cut(s)	737, 815, 865, 1041
AlwNI	CAGNNNCTG	1 cut(s)	695
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	4 cut(s)	72, 162, 462, 1053
ApaLI	GTGCAC	1 cut(s)	762
ApeKI	GCWGC	5 cut(s)	9, 58, 307, 454, 624
ApoI	RAATTY	1 cut(s)	1101
AsiGI	ACCGGT	1 cut(s)	497
Asp718I	GGTACC	1 cut(s)	737
AspLEI	GCGC	3 cut(s)	43, 254, 703
AspS9I	GGNCC	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	1058
AsuII	TTCGAA	1 cut(s)	948
BaeGI	GKGCMC	1 cut(s)	766
BalI	TGGCCA	2 cut(s)	74, 1055
BanI	GGYRCC	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	299
BbrPI	CACGTG	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	766
BbvI	GCAGC	5 cut(s)	21, 45, 294, 441, 636
BccI	CCATC	2 cut(s)	83, 144
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BcoDI	GTCTC	2 cut(s)	184, 793
BfaI	CTAG	1 cut(s)	519
BfmI	CTRYAG	1 cut(s)	1082
BfoI	RGCGCY	2 cut(s)	44, 255
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 625
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	6 cut(s)	11, 45, 60, 309, 456, 626
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	739
BmsI	GCATC	6 cut(s)	211, 686, 688, 823, 859, 971
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	458
Bpu1102I	GCTNAGC	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	948
BsaAI	YACGTR	2 cut(s)	367, 638
BsaHI	GRCGYC	2 cut(s)	339, 349
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	497
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 668, 752
Bse118I	RCCGGY	2 cut(s)	395, 497
Bse1I	ACTGG	1 cut(s)	506
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	928
BseLI	CCNNNNNNNGG	3 cut(s)	171, 668, 752
BseMII	CTCAG	8 cut(s)	51, 179, 284, 335, 373, 480, 794, 831
BseNI	ACTGG	1 cut(s)	506
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	5 cut(s)	21, 45, 294, 441, 636
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	346
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	74, 164, 464, 1055
BshNI	GGYRCC	1 cut(s)	737
BshTI	ACCGGT	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	766
BsiSI	CCGG	5 cut(s)	47, 196, 311, 396, 498
BslI	CCNNNNNNNGG	3 cut(s)	171, 668, 752
BsmAI	GTCTC	2 cut(s)	184, 793
BsnI	GGCC	4 cut(s)	74, 164, 464, 1055
Bsp119I	TTCGAA	1 cut(s)	948
Bsp1286I	GDGCHC	2 cut(s)	299, 766
Bsp143I	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	7 cut(s)	44, 68, 157, 172, 245, 399, 545
BspANI	GGCC	4 cut(s)	74, 164, 464, 1055
BspCNI	CTCAG	8 cut(s)	50, 180, 285, 334, 372, 479, 793, 830
BspLI	GGNNCC	1 cut(s)	739
BspMAI	CTGCAG	1 cut(s)	1086
BspPI	GGATC	4 cut(s)	737, 815, 865, 1041
BspT104I	TTCGAA	1 cut(s)	948
BspT107I	GGYRCC	1 cut(s)	737
BsrBI	CCGCTC	1 cut(s)	172
BsrFI	RCCGGY	2 cut(s)	395, 497
BsrI	ACTGG	1 cut(s)	506
BssAI	RCCGGY	2 cut(s)	395, 497
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
BssNI	GRCGYC	2 cut(s)	339, 349
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	437, 940
Bst6I	CTCTTC	2 cut(s)	124, 945
BstACI	GRCGYC	2 cut(s)	339, 349
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstBAI	YACGTR	2 cut(s)	367, 638
BstBI	TTCGAA	1 cut(s)	948
BstDEI	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 780, 817
BstF5I	GGATG	1 cut(s)	928
BstH2I	RGCGCY	2 cut(s)	44, 255
BstHHI	GCGC	3 cut(s)	43, 254, 703
BstKTI	GATC	8 cut(s)	26, 92, 205, 745, 823, 873, 1036, 1092
BstMAI	GTCTC	2 cut(s)	184, 793
BstMBI	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 258, 770, 983
BstNSI	RCATGY	3 cut(s)	850, 862, 1064
BstSFI	CTRYAG	1 cut(s)	1082
BstSLI	GKGCMC	1 cut(s)	766
BstV1I	GCAGC	5 cut(s)	21, 45, 294, 441, 636
BstX2I	RGATCY	2 cut(s)	202, 820
BstYI	RGATCY	2 cut(s)	202, 820
BsuRI	GGCC	4 cut(s)	74, 164, 464, 1055
BtsCI	GGATG	1 cut(s)	928
BtsI	GCAGTG	2 cut(s)	236, 1079
BtsIMutI	CAGTG	7 cut(s)	236, 329, 442, 513, 936, 1079, 1120
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	3 cut(s)	43, 254, 703
Cfr10I	RCCGGY	2 cut(s)	395, 497
Cfr13I	GGNCC	1 cut(s)	462
CseI	GACGC	2 cut(s)	149, 357
Csp6I	GTAC	1 cut(s)	738
CspAI	ACCGGT	1 cut(s)	497
CviAII	CATG	6 cut(s)	430, 847, 859, 974, 1030, 1061
CviQI	GTAC	1 cut(s)	738
DdeI	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 780, 817
DpnI	GATC	8 cut(s)	25, 91, 204, 744, 822, 872, 1035, 1091
DpnII	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
EaeI	YGGCCR	2 cut(s)	72, 1053
Eam1104I	CTCTTC	2 cut(s)	124, 945
EarI	CTCTTC	2 cut(s)	124, 945
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	299
Eco47III	AGCGCT	1 cut(s)	253
Eco72I	CACGTG	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	3 cut(s)	679, 852, 860
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	6 cut(s)	433, 850, 862, 977, 1033, 1064
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FatI	CATG	6 cut(s)	429, 846, 858, 973, 1029, 1060
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 625
FokI	GGATG	1 cut(s)	935
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 625
FspBI	CTAG	1 cut(s)	519
FspI	TGCGCA	1 cut(s)	702
GlaI	GCGC	3 cut(s)	42, 253, 702
GluI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 625
GsaI	CCCAGC	1 cut(s)	412
GsuI	CTGGAG	1 cut(s)	489
HaeII	RGCGCY	2 cut(s)	44, 255
HaeIII	GGCC	4 cut(s)	74, 164, 464, 1055
HapII	CCGG	5 cut(s)	47, 196, 311, 396, 498
HgaI	GACGC	2 cut(s)	149, 357
HhaI	GCGC	3 cut(s)	43, 254, 703
Hin1I	GRCGYC	2 cut(s)	339, 349
Hin1II	CATG	6 cut(s)	433, 850, 862, 977, 1033, 1064
Hin6I	GCGC	3 cut(s)	41, 252, 701
HinP1I	GCGC	3 cut(s)	41, 252, 701
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	2 cut(s)	95, 315
HinfI	GANTC	8 cut(s)	53, 192, 301, 330, 574, 692, 786, 1038
HpaII	CCGG	5 cut(s)	47, 196, 311, 396, 498
HphI	GGTGA	1 cut(s)	1058
Hpy166II	GTNNAC	3 cut(s)	472, 601, 764
Hpy8I	GTNNAC	3 cut(s)	472, 601, 764
Hpy99I	CGWCG	2 cut(s)	143, 351
HpyAV	CCTTC	4 cut(s)	135, 154, 605, 920
HpyCH4III	ACNGT	2 cut(s)	437, 940
HpyCH4IV	ACGT	6 cut(s)	339, 366, 597, 637, 760, 1096
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 258, 770, 983
HpyF3I	CTNAG	9 cut(s)	37, 188, 293, 321, 359, 458, 466, 780, 817
HpySE526I	ACGT	6 cut(s)	339, 366, 597, 637, 760, 1096
Hsp92I	GRCGYC	2 cut(s)	339, 349
Hsp92II	CATG	6 cut(s)	433, 850, 862, 977, 1033, 1064
HspAI	GCGC	3 cut(s)	41, 252, 701
KpnI	GGTACC	1 cut(s)	741
Kzo9I	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
LmnI	GCTCC	3 cut(s)	169, 451, 484
Lsp1109I	GCAGC	5 cut(s)	21, 45, 294, 441, 636
LweI	GCATC	6 cut(s)	211, 686, 688, 823, 859, 971
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	6 cut(s)	339, 366, 597, 637, 760, 1096
MaeIII	GTNAC	3 cut(s)	413, 534, 1077
MalI	GATC	8 cut(s)	25, 91, 204, 744, 822, 872, 1035, 1091
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
MflI	RGATCY	2 cut(s)	202, 820
MhlI	GDGCHC	2 cut(s)	299, 766
MlsI	TGGCCA	2 cut(s)	74, 1055
MluCI	AATT	5 cut(s)	280, 529, 615, 1049, 1101
MluNI	TGGCCA	2 cut(s)	74, 1055
MlyI	GAGTC	5 cut(s)	62, 186, 686, 795, 1047
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	4 cut(s)	475, 505, 508, 614
Mox20I	TGGCCA	2 cut(s)	74, 1055
Mph1103I	ATGCAT	3 cut(s)	679, 852, 860
MscI	TGGCCA	2 cut(s)	74, 1055
MseI	TTAA	1 cut(s)	629
MslI	CAYNNNNRTG	1 cut(s)	638
Msp20I	TGGCCA	2 cut(s)	74, 1055
MspI	CCGG	5 cut(s)	47, 196, 311, 396, 498
MwoI	GCNNNNNNNGC	4 cut(s)	221, 258, 770, 983
NdeII	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
NlaIII	CATG	6 cut(s)	433, 850, 862, 977, 1033, 1064
NlaIV	GGNNCC	1 cut(s)	739
NmuCI	GTSAC	2 cut(s)	534, 1077
NsbI	TGCGCA	1 cut(s)	702
NsiI	ATGCAT	3 cut(s)	679, 852, 860
NspI	RCATGY	3 cut(s)	850, 862, 1064
NspV	TTCGAA	1 cut(s)	948
PfeI	GAWTC	3 cut(s)	301, 330, 574
PinAI	ACCGGT	1 cut(s)	497
PkrI	GCNGC	6 cut(s)	11, 45, 60, 309, 456, 626
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	5 cut(s)	61, 186, 686, 794, 1046
PmaCI	CACGTG	1 cut(s)	367
PmlI	CACGTG	1 cut(s)	367
PpsI	GAGTC	5 cut(s)	61, 186, 686, 794, 1046
Ppu21I	YACGTR	2 cut(s)	367, 638
PspCI	CACGTG	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	1086
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	202, 820
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	739
RsaNI	GTAC	1 cut(s)	738
RseI	CAYNNNNRTG	1 cut(s)	638
SaqAI	TTAA	1 cut(s)	629
SatI	GCNGC	6 cut(s)	10, 44, 59, 308, 455, 625
Sau3AI	GATC	8 cut(s)	23, 89, 202, 742, 820, 870, 1033, 1089
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	5 cut(s)	62, 186, 686, 795, 1047
SduI	GDGCHC	2 cut(s)	299, 766
SfaNI	GCATC	6 cut(s)	211, 686, 688, 823, 859, 971
SfcI	CTRYAG	1 cut(s)	1082
SfuI	TTCGAA	1 cut(s)	948
SmiMI	CAYNNNNRTG	1 cut(s)	638
Sse9I	AATT	5 cut(s)	280, 529, 615, 1049, 1101
SsiI	CCGC	7 cut(s)	44, 68, 157, 172, 245, 399, 545
SspMI	CTAG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	437, 940
TaiI	ACGT	6 cut(s)	342, 369, 600, 640, 763, 1099
TaqI	TCGA	3 cut(s)	276, 948, 1036
TasI	AATT	5 cut(s)	280, 529, 615, 1049, 1101
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	301, 330, 574
Tru1I	TTAA	1 cut(s)	629
Tru9I	TTAA	1 cut(s)	629
TscAI	CASTG	6 cut(s)	236, 329, 442, 513, 943, 1086
TseFI	GTSAC	2 cut(s)	534, 1077
TseI	GCWGC	5 cut(s)	9, 58, 307, 454, 624
Tsp45I	GTSAC	2 cut(s)	534, 1077
TspDTI	ATGAA	6 cut(s)	446, 459, 555, 853, 939, 962
TspRI	CASTG	6 cut(s)	236, 329, 442, 513, 943, 1086
VneI	GTGCAC	1 cut(s)	762
XapI	RAATTY	1 cut(s)	1101
XceI	RCATGY	3 cut(s)	850, 862, 1064
XmiI	GTMKAC	1 cut(s)	600
XspI	CTAG	1 cut(s)	519
ZraI	GACGTC	1 cut(s)	340
Zsp2I	ATGCAT	3 cut(s)	679, 852, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.