Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008037

Physical Location & Seq

Genomic Coordinates Reverse (-)

31334570 .. 31335239

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAAGTCTAGGTGGAAACAGATAGATATCCAATTGCAAGCTCAACCCCGGAAGAAACCGTCTACGCCGGCGAGCTGTTCACCGGAGAGGTATCCGTTTCAGCCTCCGAGTGTGACATTTGCGACGCCGATTTACCACCCGAATATCGATACCAGTGGCAGGATCTGCCTTGACATTCTCAATCTCCCTCCAAATCCGTCGTTGAACATTTCGACTGTGCTTACTAGCATTGGTTTGTTGTTGAGTGAGCCGAATCCTGATGATGGGCTTATGTGTGAAGCGGGTTCAAATACAATTGACAAGCTTTTGATCAGAAAGCTCGGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

UQ_con

Protein Analysis

110

Amino Acids

12.0

Weight (kDa)

8.53

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	28 - 97	9.7e-23	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24515 AT3G24515 AT3G24515 AT3G24515
fragaria_vesca	FvH4_1g04830 FvH4_1g04830 FvH4_4g32890
malus_domestica	MD08G1128600.v1.1 MD14G1109900.v1.1 MD15G1186000.v1.1
prunus_persica	Prupe.7G230900_v2.0.a1
pyrus_communis	pycom15g16670
rosa_chinensis	RchiOBHm_Chr2g0090471
rosa_laevigata	RLG00000016116
rosa_multiflora	Rmu_sc0004514.1_g000022 Rmu_sc0014034.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151110
rosa_rugosa	Rorug02G0008200 Rorug02G0008300
rosa_samantha	Rh2AG053700 Rh2BG053200 Rh2CG055300 Rh2DG053900
rosa_wichuraiana	Rw2G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	159, 263
AgsI	TTSAA	2 cut(s)	205, 288
AluBI	AGCT	4 cut(s)	41, 75, 304, 319
AluI	AGCT	4 cut(s)	41, 75, 304, 319
AlwI	GGATC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	165
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	72
BccI	CCATC	1 cut(s)	257
BciVI	GTATCC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	309
BcnI	CCSGG	1 cut(s)	49
BfaI	CTAG	2 cut(s)	9, 225
BfuI	GTATCC	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	147
BsaBI	GATNNNNATC	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 263
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	159, 263
BseNI	ACTGG	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	49, 68, 83
BslI	CCNNNNNNNGG	2 cut(s)	159, 263
Bsp143I	GATC	2 cut(s)	162, 309
BspACI	CCGC	1 cut(s)	281
BspDI	ATCGAT	1 cut(s)	147
BspPI	GGATC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	162, 309
BssNI	GRCGYC	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	60, 217
BstACI	GRCGYC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	39, 69, 73
BstKTI	GATC	2 cut(s)	165, 312
BstMBI	GATC	2 cut(s)	162, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	102
BsuTUI	ATCGAT	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	3 cut(s)	39, 69, 73
CaiI	CAGNNNCTG	1 cut(s)	165
Cfr10I	RCCGGY	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	147
CseI	GACGC	1 cut(s)	133
CviJI	RGCY	7 cut(s)	41, 75, 103, 250, 268, 304, 319
CviKI_1	RGCY	7 cut(s)	41, 75, 103, 250, 268, 304, 319
DpnI	GATC	2 cut(s)	164, 311
DpnII	GATC	2 cut(s)	162, 309
Eco32I	GATATC	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	28
FaiI	YATR	2 cut(s)	272, 328
FauI	CCCGC	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	62
FspBI	CTAG	2 cut(s)	9, 225
HapII	CCGG	3 cut(s)	49, 68, 83
HgaI	GACGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	3 cut(s)	49, 68, 83
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	2 cut(s)	63, 80
Hpy188I	TCNGA	2 cut(s)	108, 314
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	2 cut(s)	63, 80
Hpy99I	CGWCG	2 cut(s)	127, 202
HpyCH4III	ACNGT	2 cut(s)	60, 217
HpyCH4V	TGCA	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	125
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	2 cut(s)	162, 309
LpnPI	CCDG	6 cut(s)	62, 81, 96, 145, 166, 270
MaeI	CTAG	2 cut(s)	9, 225
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	164, 311
MboI	GATC	2 cut(s)	162, 309
MboII	GAAGA	1 cut(s)	64
MfeI	CAATTG	2 cut(s)	32, 294
MflI	RGATCY	1 cut(s)	162
MluCI	AATT	2 cut(s)	32, 294
MnlI	CCTC	3 cut(s)	81, 114, 198
MreI	CGCCGGCG	1 cut(s)	67
MroNI	GCCGGC	1 cut(s)	67
MspI	CCGG	3 cut(s)	49, 68, 83
MspR9I	CCNGG	1 cut(s)	49
MunI	CAATTG	2 cut(s)	32, 294
MwoI	GCNNNNNNNGC	1 cut(s)	165
NaeI	GCCGGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	2 cut(s)	162, 309
NgoMIV	GCCGGC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	112
PdiI	GCCGGC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	162, 309
ScrFI	CCNGG	1 cut(s)	49
SetI	ASST	6 cut(s)	14, 43, 77, 92, 306, 321
SgrAI	CRCCGGYG	1 cut(s)	67
Sse9I	AATT	2 cut(s)	32, 294
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	2 cut(s)	9, 225
StyD4I	CCNGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	60, 217
TaqI	TCGA	2 cut(s)	147, 212
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	2 cut(s)	32, 294
TfiI	GAWTC	1 cut(s)	253
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	84, 186
TspRI	CASTG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	2 cut(s)	9, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.