AT3G26100

regulator of chromosome condensation (RCC1) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002099
Physical Location & Seq
Forward (+)
9536859 .. 9540453
3595 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26100.2

Sequence Viewer

Length: 1299 bp
ATGTGTAATAAAAGGGTGATTTTCAAGCCGATGAATGAAGAAGAACGTCAAGAGATGAAACGTAGGTGCGGAGGATCATGGAAATTAGTCCTTCGGTTTTTGCTGGCTGGTGAAGCGTGTTGTCGAAGAGAGAAATCTCAAGCTGTTGCTGGTCCTGGTCATAGTGTAGCAGTCACATCGAAAGGAGAAGTTTATACTTTCGGATATAATAACTCTGGACAGCTAGGACATGGTCATACCGAGGACGAAGCTCGAATTCAACCTGTTAGATCATTGCAGGGAGTTCGAATCATCCAAGCAGCTGCTGGTGCTGCTCGGACAATGCTAATAAGCGATGACGGAAAAGTTTATGCGTGTGGAAAAGAATCCTTCGGGGAAGCTGAATACGGAGGGCAAGGGACTAAACCAGTTACAACTCCTCAGCTTGTAACATCTTTAAAAAACATATTTGTAGTGCAAGCAGCTATTGGGAATTACTTTACCGCTGTTCTCTCCCGAGAAGGAAAGGTTTATACATTCTCGTGGGGCAATGACGGTAGACTAGGACACCAAACTGAGGCTGCGGATGTCGAGCCTCGTCCTTTGTTAGGCCCACTCGAGAATGTACCCGTTGTGCAGATTGCTGCTGGTTATTGCTACCTTCTTGCCTTAGCCTGTCAACCAAATGGCATGTCTGTTTACTCAGTTGGTTGCGGTTTGGGAGGCAAACTTGGTCATGGGTCAAGAACAGATGAGAAGTATCCTCGGGTCATCGAGCAGTTTCAGATATTGAATCTTCAACCTAGGGTAGTTGCAGCGGGTGCTTGGCATGCCGCGGTGGTAGGTCAGGATGGAAGAGTGTGCACTTGGGGTTGGGGAAGATATGGATGTTTAGGTCACGGTAACGAGGAGTGTGAATCAGTCCCTAAGGTTGTTGAAGGTCTAAGCCATGTCAAAGCAGTTCATGTCGCAACAGGAGACTACACTACTTTTGTGGTCTCAGACGATGGTGATGTTTACTCGTTTGGCTGCGGCGAATCCGCTAGTCTCGGTCACCATCCATCCTTTGATGAACAGGGTAATCGACATGCAAACGTGCTAAGTCCAACGGTAGTAACATCGCTAAAACAAGTGAACGAGCGGATGGTCCAGATAAGTCTAACGAACTCCATATACTGGAACGCTCATACATTTGCGCTCACGGAATCGGGGAAGCTATTCGCGTTTGGTGCAGGCGATCAGGGTCAGCTTGGAACAGAGCTTGGTAAGAACCAAAAAGAAAGGTGTGTACCGGAAAAAGTGGATATCGATCTCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

432

Amino Acids

46.62

Weight (kDa)

6.67

Isoelectric Point (pI)

33.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 146 - 479 1.5e-65 RCC1-like domain
RCC1_2 PF13540 149 - 174 8.7e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 161 - 209 1.7e-10 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 163 - 273 8.9e-06 Alsin RCC1-like domain
RCC1 PF00415 213 - 264 4.3e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 267 - 316 1e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 377 - 426 2.4e-15 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 489 - 527 6.7e-06 RCC1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1155
AccBSI CCGCTC 1 cut(s) 1120
AccI GTMKAC 1 cut(s) 538
AccII CGCG 2 cut(s) 815, 1202
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 255
AfaI GTAC 2 cut(s) 606, 1269
AfiI CCNNNNNNNGG 3 cut(s) 556, 587, 1155
AgsI TTSAA 5 cut(s) 25, 260, 772, 779, 917
AjnI CCWGG 1 cut(s) 154
Alw21I GWGCWC 1 cut(s) 845
Alw26I GTCTC 3 cut(s) 951, 982, 1031
Alw44I GTGCAC 1 cut(s) 841
AlwI GGATC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 305
Ama87I CYCGRG 3 cut(s) 495, 596, 744
AoxI GGCC 1 cut(s) 589
ApaLI GTGCAC 1 cut(s) 841
ApeKI GCWGC 8 cut(s) 299, 302, 311, 461, 560, 623, 794, 1008
ApoI RAATTY 1 cut(s) 255
ArsI GACNNNNNNTTYG 2 cut(s) 656, 688
Asp700I GAANNNNTTC 1 cut(s) 1196
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 1 cut(s) 1177
AspS9I GGNCC 3 cut(s) 152, 590, 1126
AsuHPI GGTGA 4 cut(s) 28, 122, 1001, 1025
AsuII TTCGAA 1 cut(s) 286
AvaI CYCGRG 3 cut(s) 495, 596, 744
AvaII GGWCC 2 cut(s) 152, 1126
AvrII CCTAGG 1 cut(s) 782
AxyI CCTNAGG 1 cut(s) 906
BaeGI GKGCMC 1 cut(s) 845
BauI CACGAG 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 845
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 8 cut(s) 289, 298, 311, 473, 547, 610, 806, 995
BccI CCATC 5 cut(s) 824, 980, 1044, 1048, 1117
BcgI CGANNNNNNTGC 4 cut(s) 159, 193, 266, 300
BciT130I CCWGG 1 cut(s) 156
BciVI GTATCC 1 cut(s) 750
BcoDI GTCTC 3 cut(s) 951, 982, 1031
BfaI CTAG 5 cut(s) 224, 542, 783, 1023, 1297
BfuI GTATCC 1 cut(s) 750
BlnI CCTAGG 1 cut(s) 782
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 2 cut(s) 152, 1126
BmeT110I CYCGRG 3 cut(s) 495, 596, 744
BmgT120I GGNCC 3 cut(s) 152, 590, 1126
BmrFI CCNGG 1 cut(s) 156
Bpu10I CCTNAGC 2 cut(s) 420, 649
Bpu14I TTCGAA 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 123
Bsa29I ATCGAT 1 cut(s) 1287
BsaBI GATNNNNATC 1 cut(s) 1287
BsaI GGTCTC 1 cut(s) 982
BsaJI CCNNGG 4 cut(s) 240, 743, 782, 813
BsaWI WCCGGW 1 cut(s) 1270
Bsc4I CCNNNNNNNGG 3 cut(s) 556, 587, 1155
Bse1I ACTGG 2 cut(s) 407, 1160
Bse21I CCTNAGG 1 cut(s) 906
Bse3DI GCAATG 2 cut(s) 272, 535
Bse8I GATNNNNATC 1 cut(s) 1287
BseBI CCWGG 1 cut(s) 156
BseCI ATCGAT 1 cut(s) 1287
BseDI CCNNGG 4 cut(s) 240, 743, 782, 813
BseGI GGATG 7 cut(s) 291, 571, 835, 872, 1036, 1040, 1128
BseJI GATNNNNATC 1 cut(s) 1287
BseLI CCNNNNNNNGG 3 cut(s) 556, 587, 1155
BseMI GCAATG 2 cut(s) 272, 535
BseMII CTCAG 4 cut(s) 434, 546, 696, 993
BseNI ACTGG 2 cut(s) 407, 1160
BseRI GAGGAG 2 cut(s) 408, 902
BseSI GKGCMC 1 cut(s) 845
BseXI GCAGC 8 cut(s) 289, 298, 311, 473, 547, 610, 806, 995
BsgI GTGCAG 2 cut(s) 635, 1230
Bsh1236I CGCG 2 cut(s) 815, 1202
BshFI GGCC 1 cut(s) 591
BshVI ATCGAT 1 cut(s) 1287
BsiHKAI GWGCWC 1 cut(s) 845
BsiHKCI CYCGRG 3 cut(s) 495, 596, 744
BsiSI CCGG 1 cut(s) 1271
BslFI GGGAC 2 cut(s) 412, 887
BslI CCNNNNNNNGG 3 cut(s) 556, 587, 1155
BsmAI GTCTC 3 cut(s) 951, 982, 1031
BsmFI GGGAC 2 cut(s) 412, 887
BsnI GGCC 1 cut(s) 591
Bso31I GGTCTC 1 cut(s) 982
BsoBI CYCGRG 3 cut(s) 495, 596, 744
Bsp119I TTCGAA 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 845
Bsp143I GATC 4 cut(s) 74, 269, 1216, 1288
BspANI GGCC 1 cut(s) 591
BspCNI CTCAG 4 cut(s) 433, 547, 695, 992
BspDI ATCGAT 1 cut(s) 1287
BspFNI CGCG 2 cut(s) 815, 1202
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 982
BsrBI CCGCTC 1 cut(s) 1120
BsrDI GCAATG 2 cut(s) 272, 535
BsrI ACTGG 2 cut(s) 407, 1160
BssECI CCNNGG 4 cut(s) 240, 743, 782, 813
BssMI GATC 4 cut(s) 74, 269, 1216, 1288
BssSI CACGAG 1 cut(s) 520
BssT1I CCWWGG 1 cut(s) 782
Bst2BI CACGAG 1 cut(s) 520
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 3 cut(s) 536, 881, 1090
Bst6I CTCTTC 2 cut(s) 121, 829
BstAPI GCANNNNNTGC 1 cut(s) 800
BstBI TTCGAA 1 cut(s) 286
BstC8I GCNNGC 4 cut(s) 105, 459, 810, 1213
BstDEI CTNAG 9 cut(s) 420, 555, 649, 682, 906, 923, 979, 1079, 1292
BstDSI CCRYGG 1 cut(s) 813
BstEII GGTNACC 1 cut(s) 1031
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 7 cut(s) 291, 571, 835, 872, 1036, 1040, 1128
BstFNI CGCG 2 cut(s) 815, 1202
BstHHI GCGC 1 cut(s) 1177
BstKTI GATC 4 cut(s) 77, 272, 1219, 1291
BstMAI GTCTC 3 cut(s) 951, 982, 1031
BstMBI GATC 4 cut(s) 74, 269, 1216, 1288
BstMWI GCNNNNNNNGC 6 cut(s) 113, 308, 311, 800, 809, 1208
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 3 cut(s) 673, 812, 1070
BstPI GGTNACC 1 cut(s) 1031
BstSCI CCNGG 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 845
BstUI CGCG 2 cut(s) 815, 1202
BstV1I GCAGC 8 cut(s) 289, 298, 311, 473, 547, 610, 806, 995
Bsu15I ATCGAT 1 cut(s) 1287
Bsu36I CCTNAGG 1 cut(s) 906
BsuI GTATCC 1 cut(s) 750
BsuRI GGCC 1 cut(s) 591
BsuTUI ATCGAT 1 cut(s) 1287
BtgI CCRYGG 1 cut(s) 813
BtgZI GCGATG 2 cut(s) 348, 1083
BtsCI GGATG 7 cut(s) 291, 571, 835, 872, 1036, 1040, 1128
Cac8I GCNNGC 4 cut(s) 105, 459, 810, 1213
CaiI CAGNNNCTG 1 cut(s) 305
CfoI GCGC 1 cut(s) 1177
Cfr13I GGNCC 3 cut(s) 152, 590, 1126
Cfr42I CCGCGG 1 cut(s) 816
ClaI ATCGAT 1 cut(s) 1287
Csp6I GTAC 2 cut(s) 605, 1268
CviAII CATG 8 cut(s) 78, 230, 670, 716, 809, 929, 944, 1067
CviQI GTAC 2 cut(s) 605, 1268
DdeI CTNAG 9 cut(s) 420, 555, 649, 682, 906, 923, 979, 1079, 1292
DpnI GATC 4 cut(s) 76, 271, 1218, 1290
DpnII GATC 4 cut(s) 74, 269, 1216, 1288
DraI TTTAAA 1 cut(s) 438
Eam1104I CTCTTC 2 cut(s) 121, 829
EarI CTCTTC 2 cut(s) 121, 829
Eco130I CCWWGG 1 cut(s) 782
Eco31I GGTCTC 1 cut(s) 982
Eco32I GATATC 1 cut(s) 1285
Eco47I GGWCC 2 cut(s) 152, 1126
Eco81I CCTNAGG 1 cut(s) 906
Eco88I CYCGRG 3 cut(s) 495, 596, 744
Eco91I GGTNACC 1 cut(s) 1031
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoO65I GGTNACC 1 cut(s) 1031
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 154
EcoRV GATATC 1 cut(s) 1285
EcoT14I CCWWGG 1 cut(s) 782
ErhI CCWWGG 1 cut(s) 782
FaeI CATG 8 cut(s) 81, 233, 673, 719, 812, 932, 947, 1070
FaqI GGGAC 2 cut(s) 412, 887
FatI CATG 8 cut(s) 77, 229, 669, 715, 808, 928, 943, 1066
FauI CCCGC 1 cut(s) 790
FblI GTMKAC 1 cut(s) 538
FokI GGATG 7 cut(s) 278, 578, 842, 879, 1023, 1027, 1135
FspBI CTAG 5 cut(s) 224, 542, 783, 1023, 1297
GlaI GCGC 1 cut(s) 1176
HaeIII GGCC 1 cut(s) 591
HapII CCGG 1 cut(s) 1271
HhaI GCGC 1 cut(s) 1177
Hin1II CATG 8 cut(s) 81, 233, 673, 719, 812, 932, 947, 1070
Hin6I GCGC 1 cut(s) 1175
HinP1I GCGC 1 cut(s) 1175
HincII GTYRAC 1 cut(s) 659
HindII GTYRAC 1 cut(s) 659
HinfI GANTC 6 cut(s) 288, 365, 772, 896, 1016, 1184
HpaII CCGG 1 cut(s) 1271
HphI GGTGA 4 cut(s) 28, 122, 1001, 1025
Hpy166II GTNNAC 7 cut(s) 539, 659, 679, 843, 997, 1114, 1268
Hpy188I TCNGA 4 cut(s) 203, 318, 765, 982
Hpy188III TCNNGA 7 cut(s) 50, 216, 495, 598, 723, 827, 1129
Hpy8I GTNNAC 7 cut(s) 539, 659, 679, 843, 997, 1114, 1268
HpyAV CCTTC 5 cut(s) 101, 379, 494, 650, 911
HpyCH4III ACNGT 3 cut(s) 536, 881, 1090
HpyCH4IV ACGT 3 cut(s) 46, 61, 1074
HpyCH4V TGCA 7 cut(s) 277, 457, 616, 794, 843, 1070, 1211
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 308, 311, 800, 809, 1208
HpyF3I CTNAG 9 cut(s) 420, 555, 649, 682, 906, 923, 979, 1079, 1292
HpySE526I ACGT 3 cut(s) 46, 61, 1074
Hsp92II CATG 8 cut(s) 81, 233, 673, 719, 812, 932, 947, 1070
HspAI GCGC 1 cut(s) 1175
KspI CCGCGG 1 cut(s) 816
Kzo9I GATC 4 cut(s) 74, 269, 1216, 1288
Lsp1109I GCAGC 8 cut(s) 289, 298, 311, 473, 547, 610, 806, 995
MaeI CTAG 5 cut(s) 224, 542, 783, 1023, 1297
MaeII ACGT 3 cut(s) 46, 61, 1074
MaeIII GTNAC 7 cut(s) 172, 409, 427, 875, 881, 1031, 1093
MalI GATC 4 cut(s) 76, 271, 1218, 1290
MbiI CCGCTC 1 cut(s) 1120
MboI GATC 4 cut(s) 74, 269, 1216, 1288
MboII GAAGA 6 cut(s) 50, 53, 138, 767, 846, 870
MhlI GDGCHC 1 cut(s) 845
MluCI AATT 3 cut(s) 83, 255, 472
MmeI TCCRAC 1 cut(s) 1109
MnlI CCTC 9 cut(s) 65, 235, 383, 429, 550, 585, 695, 753, 880
MroXI GAANNNNTTC 1 cut(s) 1196
MseI TTAA 1 cut(s) 437
MslI CAYNNNNRTG 1 cut(s) 520
MspA1I CMGCKG 4 cut(s) 302, 485, 797, 815
MspI CCGG 1 cut(s) 1271
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 2 cut(s) 815, 1202
MwoI GCNNNNNNNGC 6 cut(s) 113, 308, 311, 800, 809, 1208
NdeII GATC 4 cut(s) 74, 269, 1216, 1288
NlaIII CATG 8 cut(s) 81, 233, 673, 719, 812, 932, 947, 1070
NmuCI GTSAC 3 cut(s) 172, 875, 1031
NspI RCATGY 3 cut(s) 673, 812, 1070
NspV TTCGAA 1 cut(s) 286
PaeI GCATGC 1 cut(s) 812
PaeR7I CTCGAG 1 cut(s) 596
PdmI GAANNNNTTC 1 cut(s) 1196
PfeI GAWTC 6 cut(s) 288, 365, 772, 896, 1016, 1184
PflFI GACNNNGTC 1 cut(s) 231
PflMI CCANNNNNTGG 1 cut(s) 1155
Psp6I CCWGG 1 cut(s) 154
PspEI GGTNACC 1 cut(s) 1031
PspGI CCWGG 1 cut(s) 154
PspPI GGNCC 3 cut(s) 152, 590, 1126
PsrI GAACNNNNNNTAC 2 cut(s) 1136, 1168
PstNI CAGNNNCTG 1 cut(s) 305
PsyI GACNNNGTC 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 2 cut(s) 606, 1269
RsaNI GTAC 2 cut(s) 605, 1268
RseI CAYNNNNRTG 1 cut(s) 520
SacII CCGCGG 1 cut(s) 816
SaqAI TTAA 1 cut(s) 437
Sau3AI GATC 4 cut(s) 74, 269, 1216, 1288
Sau96I GGNCC 3 cut(s) 152, 590, 1126
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 845
Sfr274I CTCGAG 1 cut(s) 596
Sfr303I CCGCGG 1 cut(s) 816
SfuI TTCGAA 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 816
SinI GGWCC 2 cut(s) 152, 1126
SlaI CTCGAG 1 cut(s) 596
SmiMI CAYNNNNRTG 1 cut(s) 520
SmlI CTYRAG 2 cut(s) 138, 596
SmoI CTYRAG 2 cut(s) 138, 596
SphI GCATGC 1 cut(s) 812
Sse9I AATT 3 cut(s) 83, 255, 472
SspMI CTAG 5 cut(s) 224, 542, 783, 1023, 1297
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 782
TaaI ACNGT 3 cut(s) 536, 881, 1090
TaiI ACGT 3 cut(s) 49, 64, 1077
TaqI TCGA 9 cut(s) 124, 179, 253, 286, 570, 597, 753, 1063, 1287
TaqII GACCGA 1 cut(s) 1019
TasI AATT 3 cut(s) 83, 255, 472
TauI GCSGC 2 cut(s) 815, 1014
TfiI GAWTC 6 cut(s) 288, 365, 772, 896, 1016, 1184
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TseFI GTSAC 3 cut(s) 172, 875, 1031
TseI GCWGC 8 cut(s) 299, 302, 311, 461, 560, 623, 794, 1008
Tsp45I GTSAC 3 cut(s) 172, 875, 1031
TspDTI ATGAA 5 cut(s) 47, 51, 71, 932, 1065
TspGWI ACGGA 3 cut(s) 354, 402, 1196
Tth111I GACNNNGTC 1 cut(s) 231
Van91I CCANNNNNTGG 1 cut(s) 1155
VneI GTGCAC 1 cut(s) 841
VpaK11BI GGWCC 2 cut(s) 152, 1126
XagI CCTNNNNNAGG 1 cut(s) 585
XapI RAATTY 1 cut(s) 255
XceI RCATGY 3 cut(s) 673, 812, 1070
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 596
XmaJI CCTAGG 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 538
XmnI GAANNNNTTC 1 cut(s) 1196
XspI CTAG 5 cut(s) 224, 542, 783, 1023, 1297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.