MD16G1106600.v1.1

ultraviolet-B receptor UVR8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0002099
Physical Location & Seq
Reverse (-)
7483846 .. 7486840
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1106600.v1.1.491

Sequence Viewer

Length: 1461 bp
ATGGATGCCACTGCGAGCGGAACCCCCACTATACAATACCATAACATTCCTGACCAGCCAATTACCACTATTGTTGCCACTCCTGTACCAACATTTGAAAGGCGGCAACGCCATTGCTTCGGGACCTCCACCCCCGGAGAGTTCCCTTTAGCTGCAAACCCCTCCATTGTCCTCCATGTCCTTACTGCCTGCAATTTGGATCCTCAAGACCTTTCAAAGTTAGAGGCAACATGTTCCTTTTTTAGGCAGCCTGCACACTTTGCTCCTGACTTTGAATTGTCCATATCGGAGCTTGCTGCTCTGGACATGTGCCAAAAAAGAGCTATATTTAAGCCAATGACAGCCGAACAGCGTCAAGAATTGAAGCAAAGATGTGGGGGTTCATGGAAACTTGTTCTGAGGTTTTTGTTGGCTGGAGAGGCATGTTTCCGAAGGGAGAAATCGCAGGCAATAGCAGGGCCCGGTCACAGCATTGCTGTGACTTCAAAAGGATCTGTCTACTCATTTGGCTCAAACAGCTCAGGACAGCTTGGACATGGCACAACTGAAGAGGAATGCCGGCCTCAGCCAATCAGATCTCTGCAAGGCATTCGAATTATTCACGCAGCTGCTGGGGCTGGCAGGACAATGCTGATCAGTGATGCGGGGAAAGTTTATGCCTTTGGAAAGGACTCTTTTGGCGAAACTGAGTACGGGGTTCAAGGATCGAAGCTGGTTACTACTCCACAGTTGGTTGAGTCTTTGAAAGACATATTTGTGGTACAAGCTGCAATAGGAAATTTCTTCACGGCTGTGTTGTCAAGAGAGGGCAGGGTGTATACATTTTCTTGGGGCAACGATGCCAAACTCGGTCACCAAACTGAGCCAACTGATGTTGAGCCTCATCCTTTATTGGGAGCACTTGAGAATGTACCTGTGGTGCAAATTGCAGCTGGATACTGCTACCTTCTTGCTCTGGCTTGTCAACCTAATGGCATGTCAGTTTACTCTGTTGGCTGTGGCTTGGGAGGGAAGCTTGGACATGGGTTAAGAACTGATGAGAAGTTCCCCCGACTTATTGAACAATTTCAGGTTTTGAACCTTCAGCCGATGGTGGTTGCTGCTGGTGCTTGGCATGCCGCTGTGGTGGGGCAGGATGGACGCGTCTGCACTTGGGGTTGGGGCCGTTATGGCTGCTTGGGTCACGGGAATGAAGAATGTGAATCAGTTCCTAAGGTTGTGGAAGCATTGAGCCAGGTGAAAGCGGTGCACGTTGCTACAGGGGATTACACAACCTTTGTGGTCTCAGATGACGGTGATGTGTACTCATTTGGTTGCGGAGAATCAGCTAGTCTTGGACATAGTACTGCCGCCGATGGACAGGTCTTGTTTATTTCTGCTGTATTTCGTATTTCATATCTTAATTTAGTTGGTTTCCTTAACTCACATTGCAGAAAGTCGAAGTATGAAATTAATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

487

Amino Acids

52.37

Weight (kDa)

6.31

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 148 - 450 5.2e-62 RCC1-like domain
RCC1_2 PF13540 152 - 176 1.3e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 163 - 212 1.6e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 379 - 428 2.1e-15 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 18
AccI GTMKAC 2 cut(s) 498, 818
AccII CGCG 1 cut(s) 1143
AciI CCGC 7 cut(s) 18, 103, 644, 1119, 1244, 1317, 1350
AclWI GGATC 4 cut(s) 194, 207, 499, 712
AcsI RAATTY 1 cut(s) 778
AcuI CTGAAG 2 cut(s) 567, 1067
AfaI GTAC 6 cut(s) 87, 692, 762, 912, 1304, 1345
AfiI CCNNNNNNNGG 2 cut(s) 243, 893
AflIII ACRYGT 3 cut(s) 230, 306, 1141
AgsI TTSAA 9 cut(s) 98, 216, 275, 364, 486, 701, 745, 1061, 1078
AjnI CCWGG 1 cut(s) 1233
AleI CACNNNNGTG 1 cut(s) 791
Alw21I GWGCWC 2 cut(s) 901, 1251
Alw26I GTCTC 1 cut(s) 1288
Alw44I GTGCAC 1 cut(s) 1247
AlwI GGATC 4 cut(s) 194, 207, 499, 712
AlwNI CAGNNNCTG 1 cut(s) 611
AoxI GGCC 3 cut(s) 458, 560, 1162
ApaI GGGCCC 1 cut(s) 462
ApaLI GTGCAC 1 cut(s) 1247
ApeKI GCWGC 9 cut(s) 152, 247, 296, 605, 608, 767, 929, 1100, 1173
ApoI RAATTY 1 cut(s) 778
AseI ATTAAT 1 cut(s) 1452
Asp700I GAANNNNTTC 2 cut(s) 1065, 1206
AspS9I GGNCC 4 cut(s) 123, 458, 459, 1162
AsuC2I CCSGG 2 cut(s) 135, 462
AsuHPI GGTGA 3 cut(s) 845, 1249, 1307
AsuII TTCGAA 1 cut(s) 592
AvaII GGWCC 1 cut(s) 123
AxyI CCTNAGG 1 cut(s) 1212
BaeGI GKGCMC 2 cut(s) 462, 1251
BaeI ACNNNNGTAYC 2 cut(s) 69, 102
BamHI GGATCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 901, 1251
BbvCI CCTCAGC 1 cut(s) 564
BbvI GCAGC 9 cut(s) 139, 259, 283, 595, 617, 754, 941, 1087, 1160
BccI CCATC 3 cut(s) 1084, 1130, 1349
BceAI ACGGC 2 cut(s) 804, 1149
BcgI CGANNNNNNTGC 2 cut(s) 572, 606
BciT130I CCWGG 1 cut(s) 1235
BciVI GTATCC 1 cut(s) 929
BclI TGATCA 1 cut(s) 633
BcnI CCSGG 2 cut(s) 135, 462
BcoDI GTCTC 1 cut(s) 1288
BfaI CTAG 1 cut(s) 1329
BfmI CTRYAG 1 cut(s) 1257
BfuI GTATCC 1 cut(s) 929
BglI GCCNNNNNGGC 1 cut(s) 1170
BglII AGATCT 1 cut(s) 575
BmcAI AGTACT 1 cut(s) 1345
Bme1390I CCNGG 3 cut(s) 135, 462, 1235
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 4 cut(s) 123, 458, 459, 1162
BmiI GGNNCC 5 cut(s) 22, 124, 201, 460, 1163
BmrFI CCNGG 3 cut(s) 135, 462, 1235
BmsI GCATC 2 cut(s) 631, 829
BpmI CTGGAG 1 cut(s) 435
Bpu10I CCTNAGC 2 cut(s) 520, 564
Bpu14I TTCGAA 1 cut(s) 592
BpuEI CTTGAG 2 cut(s) 189, 923
BpuMI CCSGG 2 cut(s) 135, 462
BsaI GGTCTC 1 cut(s) 1288
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 893
Bse118I RCCGGY 1 cut(s) 558
Bse21I CCTNAGG 1 cut(s) 1212
Bse3DI GCAATG 3 cut(s) 112, 471, 1426
BseBI CCWGG 1 cut(s) 1235
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 3 cut(s) 10, 883, 1141
BseLI CCNNNNNNNGG 2 cut(s) 243, 893
BseMI GCAATG 3 cut(s) 112, 471, 1426
BseMII CTCAG 6 cut(s) 389, 534, 578, 678, 852, 1299
BseSI GKGCMC 2 cut(s) 462, 1251
BseXI GCAGC 9 cut(s) 139, 259, 283, 595, 617, 754, 941, 1087, 1160
BseYI CCCAGC 1 cut(s) 611
BsgI GTGCAG 2 cut(s) 237, 1132
Bsh1236I CGCG 1 cut(s) 1143
BshFI GGCC 3 cut(s) 460, 562, 1164
BsiHKAI GWGCWC 2 cut(s) 901, 1251
BsiSI CCGG 3 cut(s) 135, 462, 559
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 2 cut(s) 243, 893
BsmAI GTCTC 1 cut(s) 1288
BsmFI GGGAC 1 cut(s) 136
BsmI GAATGC 2 cut(s) 560, 588
BsnI GGCC 3 cut(s) 460, 562, 1164
Bso31I GGTCTC 1 cut(s) 1288
Bsp119I TTCGAA 1 cut(s) 592
Bsp120I GGGCCC 1 cut(s) 458
Bsp1286I GDGCHC 3 cut(s) 462, 901, 1251
Bsp143I GATC 5 cut(s) 199, 491, 575, 633, 704
BspACI CCGC 7 cut(s) 18, 103, 644, 1119, 1244, 1317, 1350
BspANI GGCC 3 cut(s) 460, 562, 1164
BspCNI CTCAG 6 cut(s) 390, 533, 577, 679, 853, 1298
BspFNI CGCG 1 cut(s) 1143
BspLI GGNNCC 5 cut(s) 22, 124, 201, 460, 1163
BspPI GGATC 4 cut(s) 194, 207, 499, 712
BspT104I TTCGAA 1 cut(s) 592
BspTNI GGTCTC 1 cut(s) 1288
BsrBI CCGCTC 1 cut(s) 18
BsrDI GCAATG 3 cut(s) 112, 471, 1426
BsrFI RCCGGY 1 cut(s) 558
BssAI RCCGGY 1 cut(s) 558
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 5 cut(s) 199, 491, 575, 633, 704
BssNAI GTATAC 1 cut(s) 819
Bst1107I GTATAC 1 cut(s) 819
Bst2UI CCWGG 1 cut(s) 1235
Bst4CI ACNGT 2 cut(s) 729, 1295
Bst6I CTCTTC 1 cut(s) 543
BstAPI GCANNNNNTGC 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 592
BstC8I GCNNGC 8 cut(s) 16, 190, 252, 294, 447, 560, 619, 1116
BstDEI CTNAG 7 cut(s) 398, 520, 564, 687, 861, 1212, 1285
BstEII GGTNACC 1 cut(s) 851
BstENI CCTNNNNNAGG 1 cut(s) 241
BstF5I GGATG 3 cut(s) 10, 883, 1141
BstFNI CGCG 1 cut(s) 1143
BstKTI GATC 5 cut(s) 202, 494, 578, 636, 707
BstMAI GTCTC 1 cut(s) 1288
BstMBI GATC 5 cut(s) 199, 491, 575, 633, 704
BstMWI GCNNNNNNNGC 7 cut(s) 260, 419, 516, 614, 1106, 1115, 1170
BstNI CCWGG 1 cut(s) 1235
BstNSI RCATGY 5 cut(s) 234, 310, 426, 979, 1118
BstPI GGTNACC 1 cut(s) 851
BstSCI CCNGG 3 cut(s) 133, 460, 1233
BstSFI CTRYAG 1 cut(s) 1257
BstSLI GKGCMC 2 cut(s) 462, 1251
BstUI CGCG 1 cut(s) 1143
BstV1I GCAGC 9 cut(s) 139, 259, 283, 595, 617, 754, 941, 1087, 1160
BstX2I RGATCY 3 cut(s) 199, 491, 575
BstYI RGATCY 3 cut(s) 199, 491, 575
BstZ17I GTATAC 1 cut(s) 819
Bsu36I CCTNAGG 1 cut(s) 1212
BsuI GTATCC 1 cut(s) 929
BsuRI GGCC 3 cut(s) 460, 562, 1164
BtsCI GGATG 3 cut(s) 10, 883, 1141
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 9, 643
Cac8I GCNNGC 8 cut(s) 16, 190, 252, 294, 447, 560, 619, 1116
CaiI CAGNNNCTG 1 cut(s) 611
Cfr10I RCCGGY 1 cut(s) 558
Cfr13I GGNCC 4 cut(s) 123, 458, 459, 1162
CseI GACGC 3 cut(s) 341, 1132, 1149
Csp6I GTAC 6 cut(s) 86, 691, 761, 911, 1303, 1344
CspCI CAANNNNNGTGG 4 cut(s) 55, 90, 1260, 1295
CviAII CATG 9 cut(s) 176, 231, 307, 384, 423, 536, 976, 1022, 1115
CviQI GTAC 6 cut(s) 86, 691, 761, 911, 1303, 1344
DdeI CTNAG 7 cut(s) 398, 520, 564, 687, 861, 1212, 1285
DpnI GATC 5 cut(s) 201, 493, 577, 635, 706
DpnII GATC 5 cut(s) 199, 491, 575, 633, 704
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
Eco24I GRGCYC 1 cut(s) 462
Eco31I GGTCTC 1 cut(s) 1288
Eco47I GGWCC 1 cut(s) 123
Eco57I CTGAAG 2 cut(s) 567, 1067
Eco81I CCTNAGG 1 cut(s) 1212
Eco91I GGTNACC 1 cut(s) 851
EcoNI CCTNNNNNAGG 1 cut(s) 241
EcoO109I RGGNCCY 2 cut(s) 123, 458
EcoO65I GGTNACC 1 cut(s) 851
EcoRII CCWGG 1 cut(s) 1233
EcoT38I GRGCYC 1 cut(s) 462
FaeI CATG 9 cut(s) 179, 234, 310, 387, 426, 539, 979, 1025, 1118
FaqI GGGAC 1 cut(s) 136
FatI CATG 9 cut(s) 175, 230, 306, 383, 422, 535, 975, 1021, 1114
FauI CCCGC 1 cut(s) 637
FbaI TGATCA 1 cut(s) 633
FblI GTMKAC 2 cut(s) 498, 818
FokI GGATG 3 cut(s) 17, 870, 1148
FriOI GRGCYC 1 cut(s) 462
FspBI CTAG 1 cut(s) 1329
GsaI CCCAGC 1 cut(s) 615
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 3 cut(s) 460, 562, 1164
HapII CCGG 3 cut(s) 135, 462, 559
HgaI GACGC 3 cut(s) 341, 1132, 1149
Hin1II CATG 9 cut(s) 179, 234, 310, 387, 426, 539, 979, 1025, 1118
HincII GTYRAC 1 cut(s) 965
HindII GTYRAC 1 cut(s) 965
HindIII AAGCTT 1 cut(s) 1013
HinfI GANTC 4 cut(s) 671, 737, 1202, 1322
HpaII CCGG 3 cut(s) 135, 462, 559
HphI GGTGA 3 cut(s) 845, 1249, 1307
Hpy166II GTNNAC 6 cut(s) 499, 819, 965, 985, 1249, 1303
Hpy188I TCNGA 5 cut(s) 289, 399, 431, 575, 1288
Hpy188III TCNNGA 8 cut(s) 50, 121, 206, 266, 302, 356, 522, 801
Hpy8I GTNNAC 6 cut(s) 499, 819, 965, 985, 1249, 1303
HpyAV CCTTC 3 cut(s) 426, 956, 1091
HpyCH4III ACNGT 2 cut(s) 729, 1295
HpyCH4IV ACGT 1 cut(s) 1251
HpyF10VI GCNNNNNNNGC 7 cut(s) 260, 419, 516, 614, 1106, 1115, 1170
HpyF3I CTNAG 7 cut(s) 398, 520, 564, 687, 861, 1212, 1285
HpySE526I ACGT 1 cut(s) 1251
Hsp92II CATG 9 cut(s) 179, 234, 310, 387, 426, 539, 979, 1025, 1118
KroI GCCGGC 1 cut(s) 558
KroNI GCCGGC 1 cut(s) 560
Ksp22I TGATCA 1 cut(s) 633
Kzo9I GATC 5 cut(s) 199, 491, 575, 633, 704
LmnI GCTCC 3 cut(s) 268, 289, 896
Lsp1109I GCAGC 9 cut(s) 139, 259, 283, 595, 617, 754, 941, 1087, 1160
LweI GCATC 2 cut(s) 631, 829
MaeI CTAG 1 cut(s) 1329
MaeII ACGT 1 cut(s) 1251
MaeIII GTNAC 5 cut(s) 464, 478, 715, 851, 1181
MalI GATC 5 cut(s) 201, 493, 577, 635, 706
MbiI CCGCTC 1 cut(s) 18
MboI GATC 5 cut(s) 199, 491, 575, 633, 704
MboII GAAGA 3 cut(s) 560, 775, 1205
MflI RGATCY 3 cut(s) 199, 491, 575
MhlI GDGCHC 3 cut(s) 462, 901, 1251
MluI ACGCGT 1 cut(s) 1141
MlyI GAGTC 2 cut(s) 665, 746
MroNI GCCGGC 1 cut(s) 558
MroXI GAANNNNTTC 2 cut(s) 1065, 1206
MseI TTAA 5 cut(s) 330, 1028, 1401, 1419, 1452
MslI CAYNNNNRTG 4 cut(s) 476, 755, 791, 1188
MspA1I CMGCKG 3 cut(s) 608, 932, 1121
MspI CCGG 3 cut(s) 135, 462, 559
MspR9I CCNGG 3 cut(s) 135, 462, 1235
Mva1269I GAATGC 2 cut(s) 560, 588
MvaI CCWGG 1 cut(s) 1235
MvnI CGCG 1 cut(s) 1143
MwoI GCNNNNNNNGC 7 cut(s) 260, 419, 516, 614, 1106, 1115, 1170
NaeI GCCGGC 1 cut(s) 560
NciI CCSGG 2 cut(s) 135, 462
NdeII GATC 5 cut(s) 199, 491, 575, 633, 704
NgoMIV GCCGGC 1 cut(s) 558
NlaIII CATG 9 cut(s) 179, 234, 310, 387, 426, 539, 979, 1025, 1118
NlaIV GGNNCC 5 cut(s) 22, 124, 201, 460, 1163
NmuCI GTSAC 4 cut(s) 464, 478, 851, 1181
NspI RCATGY 5 cut(s) 234, 310, 426, 979, 1118
NspV TTCGAA 1 cut(s) 592
OliI CACNNNNGTG 1 cut(s) 791
PaeI GCATGC 1 cut(s) 1118
PciI ACATGT 2 cut(s) 230, 306
PctI GAATGC 2 cut(s) 560, 588
PdiI GCCGGC 1 cut(s) 560
PdmI GAANNNNTTC 2 cut(s) 1065, 1206
PfeI GAWTC 2 cut(s) 1202, 1322
PleI GAGTC 2 cut(s) 665, 745
PpsI GAGTC 2 cut(s) 665, 745
PpuMI RGGWCCY 1 cut(s) 123
PscI ACATGT 2 cut(s) 230, 306
PshBI ATTAAT 1 cut(s) 1452
Psp5II RGGWCCY 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 1233
PspEI GGTNACC 1 cut(s) 851
PspFI CCCAGC 1 cut(s) 611
PspGI CCWGG 1 cut(s) 1233
PspN4I GGNNCC 5 cut(s) 22, 124, 201, 460, 1163
PspOMI GGGCCC 1 cut(s) 458
PspPI GGNCC 4 cut(s) 123, 458, 459, 1162
PspPPI RGGWCCY 1 cut(s) 123
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 3 cut(s) 199, 491, 575
PvuII CAGCTG 2 cut(s) 608, 932
RsaI GTAC 6 cut(s) 87, 692, 762, 912, 1304, 1345
RsaNI GTAC 6 cut(s) 86, 691, 761, 911, 1303, 1344
RseI CAYNNNNRTG 4 cut(s) 476, 755, 791, 1188
SaqAI TTAA 5 cut(s) 330, 1028, 1401, 1419, 1452
Sau3AI GATC 5 cut(s) 199, 491, 575, 633, 704
Sau96I GGNCC 4 cut(s) 123, 458, 459, 1162
ScaI AGTACT 1 cut(s) 1345
SchI GAGTC 2 cut(s) 665, 746
ScrFI CCNGG 3 cut(s) 135, 462, 1235
SduI GDGCHC 3 cut(s) 462, 901, 1251
SfaNI GCATC 2 cut(s) 631, 829
SfcI CTRYAG 1 cut(s) 1257
SfuI TTCGAA 1 cut(s) 592
SinI GGWCC 1 cut(s) 123
SmiMI CAYNNNNRTG 4 cut(s) 476, 755, 791, 1188
SmlI CTYRAG 2 cut(s) 204, 902
SmoI CTYRAG 2 cut(s) 204, 902
SphI GCATGC 1 cut(s) 1118
SsiI CCGC 7 cut(s) 18, 103, 644, 1119, 1244, 1317, 1350
SspMI CTAG 1 cut(s) 1329
StyD4I CCNGG 3 cut(s) 133, 460, 1233
TaaI ACNGT 2 cut(s) 729, 1295
TaiI ACGT 1 cut(s) 1254
TaqI TCGA 3 cut(s) 592, 707, 1439
TaqII GACCGA 1 cut(s) 839
TatI WGTACW 2 cut(s) 1302, 1343
TauI GCSGC 3 cut(s) 106, 1121, 1352
TfiI GAWTC 2 cut(s) 1202, 1322
Tru1I TTAA 5 cut(s) 330, 1028, 1401, 1419, 1452
Tru9I TTAA 5 cut(s) 330, 1028, 1401, 1419, 1452
TscAI CASTG 2 cut(s) 16, 643
TseFI GTSAC 4 cut(s) 464, 478, 851, 1181
TseI GCWGC 9 cut(s) 152, 247, 296, 605, 608, 767, 929, 1100, 1173
Tsp45I GTSAC 4 cut(s) 464, 478, 851, 1181
TspDTI ATGAA 4 cut(s) 372, 1206, 1383, 1461
TspRI CASTG 2 cut(s) 16, 643
VneI GTGCAC 1 cut(s) 1247
VpaK11BI GGWCC 1 cut(s) 123
VspI ATTAAT 1 cut(s) 1452
XagI CCTNNNNNAGG 1 cut(s) 241
XapI RAATTY 1 cut(s) 778
XceI RCATGY 5 cut(s) 234, 310, 426, 979, 1118
XmiI GTMKAC 2 cut(s) 498, 818
XmnI GAANNNNTTC 2 cut(s) 1065, 1206
XspI CTAG 1 cut(s) 1329
ZrmI AGTACT 1 cut(s) 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.