Rw4G027210

ultraviolet-B receptor UVR8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002099
Physical Location & Seq
Forward (+)
53630716 .. 53634937
4222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027210.1

Sequence Viewer

Length: 1299 bp
ATGTGCCAAAAGAGAGCTATATTTAAGCCAATGACAACTGAACAGCGTCAAGAATTGAAGCAAAGATGTGGCGGTTCATGGAAACTGGTCCTGAGGTTTCTTTTGGCTGGAGAGGCGTGTTTCAGAAGGGAGAAATCGCAGGCAATTGCTGGACCTGGTCACAGCATTGCTGTGACTTCAAAAGGAACTGTCTACTCATTTGGTTCTAACAGCTCGGGACAGCTTGGACATGGCACCACTGACGAGGAATGGCGGCCTCGGCCAATCAGATCTCTGCAAGGCATTCGAATTATTCATGCAGCTGCTGGGGCGGGGAGGACAATGCTGATCAGTGATGCTGGGAAGGTTTATGCCTTTGGGAAGGACTCTTTTGGTGAAACTGAATATGGCGTCCAAGGATCAAAGCTGGTTACCACTCCACAATTGGTTGAGTCCTTGAAAGATATATTTGTGGTGCAAGCTGCAATTGGAAACTTCTTCACAGCTGTGTTGTCAAGGGAAGGCAGGGTATATACATTTTCTTGGGGAAGTGATGGCAAACTTGGTCACCAAACTGAACCGAATGATGTTGAGCCCCATCCTTTGTTGGGAGCACTTGAGAATGTACCTGTGGTGCAAATTGCAGCTGGATACTGCTACCTTCTTGCTCTGGCTTGTCAGCCTAATGGAATGTCTGTTTACTCTGTTGGCTGTGGCTTGGGTGGCAAGCTTGGACATGGTTCAAGAACTGATGAGAAGCACCCCCGACTGATTGAACAGTTTCAGCTTTTGAACCTTCAGCCCATGGTGGTTGCGGCTGGTGCCTGGCATGCTGCTGTGGTTGGCCAGGATGGACGGGTCTGCACATGGGGTTGGGGTCGTTACGGGTGCTTGGGTCATGGGAATGAAGAGTGTGAATCAGCTCCTAAGGTTGTGGAAGCATTGAGCAATGTGAAAGCTGTGCATGTAGCTACAGGAGATTACACAACCTTTGTGGTTTCCGAAGATGGTGATGTGTACTCATTTGGCTGTGGAGAATCAGCTAGTCTTGGACACAATTCTGCTGCCGATGGACAGGGAAATAGGCATGCAAATGTATTGGCTCCAGAGCTTGTGTCATCACTCAAGCAAGTAAACGAGCGGGTTGTACAGATCAGTCTCACCAATTCAATATACTGGAACGCTCACACTTTCGCACTCACTGAATCGGGGAAACTATATGCATTTGGGGCAGGGGACAAAGGTCAACTAGGAATTGAGCTTGTTGCTAATCAGACTGAAAGGGGAAATCCAGAGCTGGTTGATATTGATCTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

432

Amino Acids

46.36

Weight (kDa)

6.5

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 46 - 380 5e-64 RCC1-like domain
RCC1_2 PF13540 50 - 74 5.7e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 61 - 110 2.3e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 167 - 216 8e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 225 - 274 4.9e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 277 - 326 4.5e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 329 - 379 6.5e-06 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 233, 800
AccBSI CCGCTC 1 cut(s) 1120
AccI GTMKAC 1 cut(s) 192
AciI CCGC 5 cut(s) 72, 253, 311, 794, 1120
AclWI GGATC 1 cut(s) 406
AcoI YGGCCR 2 cut(s) 260, 823
AcuI CTGAAG 1 cut(s) 761
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 3 cut(s) 606, 998, 1128
AfiI CCNNNNNNNGG 1 cut(s) 587
AgsI TTSAA 7 cut(s) 58, 180, 439, 723, 755, 772, 1149
AjnI CCWGG 3 cut(s) 154, 803, 825
AleI CACNNNNGTG 1 cut(s) 485
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 1 cut(s) 1142
AlwI GGATC 1 cut(s) 406
AlwNI CAGNNNCTG 1 cut(s) 305
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 3 cut(s) 254, 260, 823
ApeKI GCWGC 6 cut(s) 299, 302, 461, 623, 812, 1043
Asp700I GAANNNNTTC 1 cut(s) 759
AspS9I GGNCC 2 cut(s) 88, 152
AsuHPI GGTGA 4 cut(s) 386, 539, 1001, 1132
AsuII TTCGAA 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 2 cut(s) 88, 152
AxyI CCTNAGG 2 cut(s) 92, 906
BalI TGGCCA 1 cut(s) 825
BanI GGYRCC 2 cut(s) 233, 800
BanII GRGCYC 1 cut(s) 576
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 6 cut(s) 289, 311, 448, 635, 799, 1030
BccI CCATC 5 cut(s) 527, 585, 824, 980, 1043
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 3 cut(s) 156, 805, 827
BciVI GTATCC 1 cut(s) 623
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 1142
BfaI CTAG 2 cut(s) 1023, 1229
BfmI CTRYAG 1 cut(s) 951
BfuI GTATCC 1 cut(s) 623
BglII AGATCT 1 cut(s) 269
BisI GCNGC 8 cut(s) 254, 300, 303, 462, 624, 795, 813, 1044
BlsI GCNGC 8 cut(s) 255, 301, 304, 463, 625, 796, 814, 1045
Bme1390I CCNGG 3 cut(s) 156, 805, 827
Bme18I GGWCC 2 cut(s) 88, 152
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 88, 152
BmiI GGNNCC 3 cut(s) 235, 802, 1083
BmrFI CCNGG 3 cut(s) 156, 805, 827
BmsI GCATC 1 cut(s) 325
BoxI GACNNNNGTC 1 cut(s) 1221
BpmI CTGGAG 2 cut(s) 129, 1068
Bpu14I TTCGAA 1 cut(s) 286
BpuEI CTTGAG 2 cut(s) 617, 1088
BsaBI GATNNNNATC 1 cut(s) 1287
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 3 cut(s) 257, 394, 783
Bsc4I CCNNNNNNNGG 1 cut(s) 587
Bse1I ACTGG 2 cut(s) 90, 1160
Bse21I CCTNAGG 2 cut(s) 92, 906
Bse3DI GCAATG 2 cut(s) 165, 934
Bse8I GATNNNNATC 1 cut(s) 1287
BseBI CCWGG 3 cut(s) 156, 805, 827
BseDI CCNNGG 3 cut(s) 257, 394, 783
BseGI GGATG 2 cut(s) 577, 835
BseJI GATNNNNATC 1 cut(s) 1287
BseLI CCNNNNNNNGG 1 cut(s) 587
BseMI GCAATG 2 cut(s) 165, 934
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 90, 1160
BseXI GCAGC 6 cut(s) 289, 311, 448, 635, 799, 1030
BseYI CCCAGC 2 cut(s) 305, 338
BsgI GTGCAG 1 cut(s) 826
BshFI GGCC 3 cut(s) 256, 262, 825
BshNI GGYRCC 2 cut(s) 233, 800
BsiHKAI GWGCWC 1 cut(s) 595
BsiHKCI CYCGRG 1 cut(s) 214
BslFI GGGAC 2 cut(s) 231, 1229
BslI CCNNNNNNNGG 1 cut(s) 587
BsmAI GTCTC 1 cut(s) 1142
BsmFI GGGAC 2 cut(s) 231, 1229
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 3 cut(s) 256, 262, 825
BsoBI CYCGRG 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 576, 595
Bsp1407I TGTACA 1 cut(s) 1126
Bsp143I GATC 5 cut(s) 269, 327, 398, 1131, 1288
Bsp19I CCATGG 1 cut(s) 783
BspACI CCGC 5 cut(s) 72, 253, 311, 794, 1120
BspANI GGCC 3 cut(s) 256, 262, 825
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 235, 802, 1083
BspPI GGATC 1 cut(s) 406
BspT104I TTCGAA 1 cut(s) 286
BspT107I GGYRCC 2 cut(s) 233, 800
BsrBI CCGCTC 1 cut(s) 1120
BsrDI GCAATG 2 cut(s) 165, 934
BsrGI TGTACA 1 cut(s) 1126
BsrI ACTGG 2 cut(s) 90, 1160
BssECI CCNNGG 3 cut(s) 257, 394, 783
BssMI GATC 5 cut(s) 269, 327, 398, 1131, 1288
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 394, 783
Bst2UI CCWGG 3 cut(s) 156, 805, 827
Bst4CI ACNGT 2 cut(s) 190, 759
Bst6I CTCTTC 1 cut(s) 882
BstACI GRCGYC 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 1126
BstBI TTCGAA 1 cut(s) 286
BstC8I GCNNGC 5 cut(s) 141, 459, 707, 810, 1068
BstDEI CTNAG 3 cut(s) 92, 906, 1292
BstDSI CCRYGG 1 cut(s) 783
BstEII GGTNACC 2 cut(s) 409, 545
BstF5I GGATG 2 cut(s) 577, 835
BstKTI GATC 5 cut(s) 272, 330, 401, 1134, 1291
BstMAI GTCTC 1 cut(s) 1142
BstMBI GATC 5 cut(s) 269, 327, 398, 1131, 1288
BstMWI GCNNNNNNNGC 7 cut(s) 113, 259, 308, 702, 800, 809, 1208
BstNI CCWGG 3 cut(s) 156, 805, 827
BstNSI RCATGY 3 cut(s) 812, 947, 1070
BstPAI GACNNNNGTC 1 cut(s) 1221
BstPI GGTNACC 2 cut(s) 409, 545
BstSCI CCNGG 3 cut(s) 154, 803, 825
BstSFI CTRYAG 1 cut(s) 951
BstV1I GCAGC 6 cut(s) 289, 311, 448, 635, 799, 1030
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
Bsu36I CCTNAGG 2 cut(s) 92, 906
BsuI GTATCC 1 cut(s) 623
BsuRI GGCC 3 cut(s) 256, 262, 825
BtgI CCRYGG 1 cut(s) 783
BtsCI GGATG 2 cut(s) 577, 835
BtsIMutI CAGTG 3 cut(s) 237, 337, 1179
Cac8I GCNNGC 5 cut(s) 141, 459, 707, 810, 1068
CaiI CAGNNNCTG 1 cut(s) 305
Cfr13I GGNCC 2 cut(s) 88, 152
CseI GACGC 2 cut(s) 35, 379
CsiI ACCWGGT 1 cut(s) 154
Csp6I GTAC 3 cut(s) 605, 997, 1127
CspCI CAANNNNNGTGG 2 cut(s) 954, 989
CviQI GTAC 3 cut(s) 605, 997, 1127
DdeI CTNAG 3 cut(s) 92, 906, 1292
DpnI GATC 5 cut(s) 271, 329, 400, 1133, 1290
DpnII GATC 5 cut(s) 269, 327, 398, 1131, 1288
EaeI YGGCCR 2 cut(s) 260, 823
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Eco130I CCWWGG 2 cut(s) 394, 783
Eco24I GRGCYC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 88, 152
Eco57I CTGAAG 1 cut(s) 761
Eco81I CCTNAGG 2 cut(s) 92, 906
Eco88I CYCGRG 1 cut(s) 214
Eco91I GGTNACC 2 cut(s) 409, 545
EcoO65I GGTNACC 2 cut(s) 409, 545
EcoRII CCWGG 3 cut(s) 154, 803, 825
EcoT14I CCWWGG 2 cut(s) 394, 783
EcoT22I ATGCAT 1 cut(s) 1204
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 2 cut(s) 394, 783
FaqI GGGAC 2 cut(s) 231, 1229
FauI CCCGC 2 cut(s) 304, 1113
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 8 cut(s) 254, 300, 303, 462, 624, 795, 813, 1044
FokI GGATG 2 cut(s) 564, 842
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 8 cut(s) 254, 300, 303, 462, 624, 795, 813, 1044
FspBI CTAG 2 cut(s) 1023, 1229
GluI GCNGC 8 cut(s) 254, 300, 303, 462, 624, 795, 813, 1044
GsaI CCCAGC 2 cut(s) 309, 342
GsuI CTGGAG 2 cut(s) 129, 1068
HaeIII GGCC 3 cut(s) 256, 262, 825
HgaI GACGC 2 cut(s) 35, 379
Hin1I GRCGYC 1 cut(s) 390
HincII GTYRAC 1 cut(s) 1226
HindII GTYRAC 1 cut(s) 1226
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 5 cut(s) 365, 431, 896, 1016, 1184
HphI GGTGA 4 cut(s) 386, 539, 1001, 1132
Hpy166II GTNNAC 5 cut(s) 193, 679, 997, 1114, 1226
Hpy188I TCNGA 5 cut(s) 125, 269, 982, 1254, 1295
Hpy188III TCNNGA 6 cut(s) 50, 91, 216, 723, 1085, 1271
Hpy8I GTNNAC 5 cut(s) 193, 679, 997, 1114, 1226
HpyAV CCTTC 6 cut(s) 120, 337, 355, 494, 650, 785
HpyCH4III ACNGT 2 cut(s) 190, 759
HpyF10VI GCNNNNNNNGC 7 cut(s) 113, 259, 308, 702, 800, 809, 1208
HpyF3I CTNAG 3 cut(s) 92, 906, 1292
Hsp92I GRCGYC 1 cut(s) 390
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 5 cut(s) 269, 327, 398, 1131, 1288
LmnI GCTCC 3 cut(s) 590, 907, 1087
Lsp1109I GCAGC 6 cut(s) 289, 311, 448, 635, 799, 1030
LweI GCATC 1 cut(s) 325
MabI ACCWGGT 1 cut(s) 154
MaeI CTAG 2 cut(s) 1023, 1229
MaeIII GTNAC 5 cut(s) 158, 172, 409, 545, 860
MalI GATC 5 cut(s) 271, 329, 400, 1133, 1290
MbiI CCGCTC 1 cut(s) 1120
MboI GATC 5 cut(s) 269, 327, 398, 1131, 1288
MboII GAAGA 3 cut(s) 469, 899, 995
MfeI CAATTG 3 cut(s) 144, 422, 465
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 2 cut(s) 576, 595
MlsI TGGCCA 1 cut(s) 825
MluCI AATT 9 cut(s) 53, 144, 288, 422, 465, 618, 1036, 1144, 1233
MluNI TGGCCA 1 cut(s) 825
MlyI GAGTC 2 cut(s) 359, 440
MnlI CCTC 5 cut(s) 87, 106, 238, 267, 309
Mox20I TGGCCA 1 cut(s) 825
Mph1103I ATGCAT 1 cut(s) 1204
MroXI GAANNNNTTC 1 cut(s) 759
MscI TGGCCA 1 cut(s) 825
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 4 cut(s) 170, 485, 882, 1071
Msp20I TGGCCA 1 cut(s) 825
MspA1I CMGCKG 3 cut(s) 302, 485, 626
MspR9I CCNGG 3 cut(s) 156, 805, 827
MunI CAATTG 3 cut(s) 144, 422, 465
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 3 cut(s) 156, 805, 827
MwoI GCNNNNNNNGC 7 cut(s) 113, 259, 308, 702, 800, 809, 1208
NcoI CCATGG 1 cut(s) 783
NdeII GATC 5 cut(s) 269, 327, 398, 1131, 1288
NlaIV GGNNCC 3 cut(s) 235, 802, 1083
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 3 cut(s) 158, 172, 545
NsiI ATGCAT 1 cut(s) 1204
NspI RCATGY 3 cut(s) 812, 947, 1070
NspV TTCGAA 1 cut(s) 286
OliI CACNNNNGTG 1 cut(s) 485
PaeI GCATGC 2 cut(s) 812, 1070
PctI GAATGC 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 3 cut(s) 896, 1016, 1184
PflFI GACNNNGTC 1 cut(s) 156
PkrI GCNGC 8 cut(s) 255, 301, 304, 463, 625, 796, 814, 1045
PleI GAGTC 2 cut(s) 359, 439
PpsI GAGTC 2 cut(s) 359, 439
PshAI GACNNNNGTC 1 cut(s) 1221
Psp6I CCWGG 3 cut(s) 154, 803, 825
PspEI GGTNACC 2 cut(s) 409, 545
PspFI CCCAGC 2 cut(s) 305, 338
PspGI CCWGG 3 cut(s) 154, 803, 825
PspN4I GGNNCC 3 cut(s) 235, 802, 1083
PspPI GGNCC 2 cut(s) 88, 152
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 156
PvuII CAGCTG 3 cut(s) 302, 485, 626
RsaI GTAC 3 cut(s) 606, 998, 1128
RsaNI GTAC 3 cut(s) 605, 997, 1127
RseI CAYNNNNRTG 4 cut(s) 170, 485, 882, 1071
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 8 cut(s) 254, 300, 303, 462, 624, 795, 813, 1044
Sau3AI GATC 5 cut(s) 269, 327, 398, 1131, 1288
Sau96I GGNCC 2 cut(s) 88, 152
SchI GAGTC 2 cut(s) 359, 440
ScrFI CCNGG 3 cut(s) 156, 805, 827
SduI GDGCHC 2 cut(s) 576, 595
SexAI ACCWGGT 1 cut(s) 154
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 951
SfuI TTCGAA 1 cut(s) 286
SinI GGWCC 2 cut(s) 88, 152
SmiMI CAYNNNNRTG 4 cut(s) 170, 485, 882, 1071
SmlI CTYRAG 2 cut(s) 596, 1103
SmoI CTYRAG 2 cut(s) 596, 1103
SphI GCATGC 2 cut(s) 812, 1070
Sse9I AATT 9 cut(s) 53, 144, 288, 422, 465, 618, 1036, 1144, 1233
SsiI CCGC 5 cut(s) 72, 253, 311, 794, 1120
SspMI CTAG 2 cut(s) 1023, 1229
StyD4I CCNGG 3 cut(s) 154, 803, 825
StyI CCWWGG 2 cut(s) 394, 783
TaaI ACNGT 2 cut(s) 190, 759
TaqI TCGA 1 cut(s) 286
TasI AATT 9 cut(s) 53, 144, 288, 422, 465, 618, 1036, 1144, 1233
TatI WGTACW 2 cut(s) 996, 1126
TauI GCSGC 2 cut(s) 256, 797
TfiI GAWTC 3 cut(s) 896, 1016, 1184
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 3 cut(s) 244, 337, 1186
TseFI GTSAC 3 cut(s) 158, 172, 545
TseI GCWGC 6 cut(s) 299, 302, 461, 623, 812, 1043
Tsp45I GTSAC 3 cut(s) 158, 172, 545
TspDTI ATGAA 3 cut(s) 66, 284, 900
TspRI CASTG 3 cut(s) 244, 337, 1186
Tth111I GACNNNGTC 1 cut(s) 156
VpaK11BI GGWCC 2 cut(s) 88, 152
XceI RCATGY 3 cut(s) 812, 947, 1070
XcmI CCANNNNNNNNNTGG 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 2 cut(s) 1023, 1229
Zsp2I ATGCAT 1 cut(s) 1204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.