Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002099

Physical Location & Seq

Genomic Coordinates Forward (+)

42903027 .. 42905289

Gene Structure 2263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0256400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCCAACTCCGATTCCACCGCTTCTCTTCCTCCATCGGCTCCTCCTCCTCCGCTCTCATCCACAACAAAGGAGAATCTGACTCCAGTTGCCTGCAAGATTGAAGAACTGACTGAATCCAGGTCTGAGCTGCTTGGCAGAATTCAAGGGTTGAAGAAGGATTTACAAACATGGAGGTCAAAGCTAGACTCGCAAGTTAAGGTCTACCGCGATGAACTTTCAGAACTCAAGCAATCGCTCAACACTGAAGTGGAGCAACTTCGATCAGAATTTCAAGAACTGAGGACCACTCTTCAGCAGCAGCAAGATGATGTAACTACTAGTCTTCGGAACTTTGGGCTACAGGACGTGACTGGAGATTCCAAGGCTGATAATACTGAGGTTGAAGGGAAGGCTCTCAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1

Protein Analysis

135

Amino Acids

15.06

Weight (kDa)

4.81

Isoelectric Point (pI)

73.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26100 AT3G26100 AT3G26100 AT3G26100 AT3G26100 AT3G26100
fragaria_vesca	FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091
malus_domestica	MD07G1091600.v1.1 MD13G1106500.v1.1 MD16G1106600.v1.1
prunus_persica	Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1
pyrus_communis	pycom07g07490 pycom13g09230 pycom16g09080
rosa_chinensis	RchiOBHm_Chr4g0432281
rosa_laevigata	RLG00000006857
rosa_multiflora	Rmu_sc0001084.1_g000045
rosa_roxburghii	Rroxscaffold_5G00373740
rosa_rugosa	Rorug04G0256000 Rorug04G0256100 Rorug04G0256200 Rorug04G0256300 Rorug04G0256400 Rorug04G0256400 Rorug04G0256400
rosa_samantha	Rh4AG313000 Rh4BG320600 Rh4CG335800 Rh4DG316000
rosa_wichuraiana	Rw4G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	210
AciI	CCGC	3 cut(s)	21, 53, 208
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	141, 269
AcuI	CTGAAG	2 cut(s)	267, 278
AgsI	TTSAA	5 cut(s)	104, 146, 154, 275, 386
AhlI	ACTAGT	1 cut(s)	320
AjiI	CACGTC	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	119
AleI	CACNNNNGTG	1 cut(s)	248
AluBI	AGCT	2 cut(s)	130, 184
AluI	AGCT	2 cut(s)	130, 184
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	130, 298, 301
ApoI	RAATTY	2 cut(s)	141, 269
AspS9I	GGNCC	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	3 cut(s)	117, 310, 313
BccI	CCATC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	121
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	2 cut(s)	185, 321
BfmI	CTRYAG	1 cut(s)	341
BisI	GCNGC	3 cut(s)	131, 299, 302
BlsI	GCNGC	3 cut(s)	132, 300, 303
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	285
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	317
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpmI	CTGGAG	2 cut(s)	69, 375
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	363
Bse1I	ACTGG	2 cut(s)	86, 358
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	59
BseMII	CTCAG	3 cut(s)	117, 272, 369
BseNI	ACTGG	2 cut(s)	86, 358
BseRI	GAGGAG	3 cut(s)	33, 36, 39
BseXI	GCAGC	3 cut(s)	117, 310, 313
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	263
BspACI	CCGC	3 cut(s)	21, 53, 208
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	118, 273, 370
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	86, 358
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	121
Bst6I	CTCTTC	2 cut(s)	33, 297
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	126, 281, 378
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	263
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	341
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	117, 310, 313
BstV2I	GAAGAC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	285
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	7 cut(s)	5, 41, 130, 184, 340, 368, 395
CviKI_1	RGCY	7 cut(s)	5, 41, 130, 184, 340, 368, 395
DdeI	CTNAG	3 cut(s)	126, 281, 378
DpnI	GATC	1 cut(s)	265
DpnII	GATC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	33, 297
EarI	CTCTTC	2 cut(s)	33, 297
Eco130I	CCWWGG	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	267, 278
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	1 cut(s)	174
FaiI	YATR	1 cut(s)	172
FatI	CATG	1 cut(s)	170
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	131, 299, 302
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	131, 299, 302
FspBI	CTAG	2 cut(s)	185, 321
GluI	GCNGC	3 cut(s)	131, 299, 302
GsuI	CTGGAG	2 cut(s)	69, 375
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	174
HinfI	GANTC	6 cut(s)	14, 76, 82, 116, 188, 359
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	6 cut(s)	13, 81, 127, 223, 268, 330
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	151, 380, 385
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	3 cut(s)	126, 281, 378
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	263
LmnI	GCTCC	2 cut(s)	46, 253
LpnPI	CCDG	6 cut(s)	99, 106, 106, 133, 329, 339
Lsp1109I	GCAGC	3 cut(s)	117, 310, 313
MaeI	CTAG	2 cut(s)	185, 321
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	313, 349
MalI	GATC	1 cut(s)	265
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	1 cut(s)	263
MboII	GAAGA	5 cut(s)	20, 116, 166, 284, 317
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	141, 269
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	76, 182
MnlI	CCTC	7 cut(s)	42, 54, 57, 60, 168, 276, 373
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	190
NdeII	GATC	1 cut(s)	263
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	349
OliI	CACNNNNGTG	1 cut(s)	248
PfeI	GAWTC	4 cut(s)	14, 76, 116, 359
PkrI	GCNGC	3 cut(s)	132, 300, 303
PleI	GAGTC	2 cut(s)	76, 182
PpsI	GAGTC	2 cut(s)	76, 182
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	131, 299, 302
Sau3AI	GATC	1 cut(s)	263
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	2 cut(s)	76, 182
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	7 cut(s)	125, 132, 179, 186, 204, 351, 384
SfcI	CTRYAG	1 cut(s)	341
SinI	GGWCC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	2 cut(s)	141, 269
SsiI	CCGC	3 cut(s)	21, 53, 208
SspMI	CTAG	2 cut(s)	185, 321
StyD4I	CCNGG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	363
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	262
TasI	AATT	2 cut(s)	141, 269
TfiI	GAWTC	4 cut(s)	14, 76, 116, 359
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	130, 298, 301
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	2 cut(s)	141, 269
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	2 cut(s)	185, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.