Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002099

Physical Location & Seq

Genomic Coordinates Forward (+)

9652228 .. 9654074

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1091600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTATACATTTTCTTGGGGCAACGATGGCAAACTCGACCACCTAACCGAGCCAACTGATGTTGAGCCCCATCCTTTAATGGGAGCACTTGAGAATGTACCTGTGGTGAAAATTGCAGCTGGATACTGCTATGCTACGTTCTTGCTATGGCTTGTCAACCAAATGGCATATGGAAATCGACATGCAAATGTGTTGGCACCAGAACTACCTAGTGACATCGTTGAAGCAAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1

Protein Analysis

79

Amino Acids

8.63

Weight (kDa)

4.57

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26100 AT3G26100 AT3G26100 AT3G26100 AT3G26100 AT3G26100
fragaria_vesca	FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091
malus_domestica	MD07G1091600.v1.1 MD13G1106500.v1.1 MD16G1106600.v1.1
prunus_persica	Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1
pyrus_communis	pycom07g07490 pycom13g09230 pycom16g09080
rosa_chinensis	RchiOBHm_Chr4g0432281
rosa_laevigata	RLG00000006857
rosa_multiflora	Rmu_sc0001084.1_g000045
rosa_roxburghii	Rroxscaffold_5G00373740
rosa_rugosa	Rorug04G0256000 Rorug04G0256100 Rorug04G0256200 Rorug04G0256300 Rorug04G0256400 Rorug04G0256400 Rorug04G0256400
rosa_samantha	Rh4AG313000 Rh4BG320600 Rh4CG335800 Rh4DG316000
rosa_wichuraiana	Rw4G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Alw21I	GWGCWC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	2 cut(s)	20, 78
BciVI	GTATCC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	116
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	69, 88
BspLI	GGNNCC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	196
BssNAI	GTATAC	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	128
BstZ17I	GTATAC	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	4 cut(s)	52, 67, 119, 151
CviKI_1	RGCY	4 cut(s)	52, 67, 119, 151
CviQI	GTAC	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	1 cut(s)	185
FaiI	YATR	6 cut(s)	6, 132, 148, 169, 171, 183
FatI	CATG	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	6, 157
Hpy8I	GTNNAC	2 cut(s)	6, 157
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	116, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	3 cut(s)	105, 114, 213
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	69, 88
MluCI	AATT	1 cut(s)	111
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	27
NdeI	CATATG	1 cut(s)	169
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	212
NspI	RCATGY	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	69, 88
SetI	ASST	5 cut(s)	45, 103, 121, 140, 211
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	210
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	36, 178
TasI	AATT	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	212
XceI	RCATGY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.