Rh4AG313000

ultraviolet-B receptor UVR8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002099
Physical Location & Seq
Forward (+)
62351126 .. 62355572
4447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG313000.1

Sequence Viewer

Length: 1149 bp
ATGTGCCAAAAGAGAGCTATATTTAAGCCAATGACAACTGAACAGCGTCAAGAATTGAAGCAAAGATGTGGCGGTTCATGGAAACTGGTCCTGAGGTTTCTTTTGGCTGGAGAGGCGTGTTTCAGAAGGGAGAAATCGCAGGCAATTGCTGGACCTGGTCACAGCATTGCTGTGACTTCAAAAGGAACTGTCTACTCATTTGGTTCTAACAGCTCAGGACAGCTTGGACATGGCACCACTGACGAGGAATGGCGGCCTCGGCCAATCAGATCTCTGCAAGGCATTCGAATTATTCATGCAGCTGCTGGGGCGGGGAGGACAATGCTGATCAGTGATGCTGGGAAGGTTTATGCCTTTGGGAAGGACTCTTTTGGTGAAACTGAATATGGGGTCCAAGGATCAAAGCTGGTTACCACTCCACAATTGGTTGAATCCTTGAAAGATATATTTGTGGTGCAAGCTGCAATTGGAAACTTCTTCACAGCTGTGTTGTCAAGGGAAGGCAGGGTATATACATTTTCTTGGGGAAGTGATGGCAAACTTGGTCACCAAACTGAACCGAATGATGTTGAGCCCCATCCTTTGTTGGGAGCACTTGAGAATGTACCTGTGGTGCAAATTGCAGCTGGATACTGCTACCTTCTTGCTCTGGCTTGTCAGCCTAATGGAATGTCTGTTTACTCTGTTGGCTGTGGCTTGGGTGGCAAGCTTGGACATGGTTCAAGAACTGATGAGAAGCACCCCCGACTGATTGAACAGTTTCAGCTTTTGAACCTTCAGCCCATGGTGGTTGCGGCTGGTGCCTGGCATGCTGCTGTGGTTGGCCAGGATGGACGGGTCTGCACGTGGGGTTGGGGTCGTTACGGGTGCTTGGGTCATGGGAATGAAGAGTGTGAATCAGCTCCTAAGGTTGTGGAAGCATTGAGCAATGTGAAAGCTGTGCATGTAGCTACAGGAGATTACACAACCTTTGTGGTTTCCGAAGATGGTGATGTGTATTCATTTGGCTGTGGAGAATCAGCTAGTCTTGGACACAATTCTGCTGCCGATGGACAGGTCTTGCTTATTACCGCTTTTATTTCATTTATATACTCTAGTTCTGCCTCCTTAACTACATTGCAGAAAGTCAACATGTTCAATGAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

382

Amino Acids

40.96

Weight (kDa)

6.83

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 46 - 349 9.5e-64 RCC1-like domain
RCC1_2 PF13540 50 - 74 4.9e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 61 - 110 2e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 167 - 216 6.8e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 225 - 274 4.2e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 277 - 326 3.8e-15 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 233, 800
AccI GTMKAC 1 cut(s) 192
AciI CCGC 5 cut(s) 72, 253, 311, 794, 1071
AclWI GGATC 1 cut(s) 406
AcoI YGGCCR 2 cut(s) 260, 823
AcuI CTGAAG 1 cut(s) 761
AcvI CACGTG 1 cut(s) 846
AfaI GTAC 1 cut(s) 606
AfiI CCNNNNNNNGG 1 cut(s) 587
AflIII ACRYGT 1 cut(s) 1131
AgsI TTSAA 8 cut(s) 58, 180, 431, 439, 723, 755, 772, 1138
AjnI CCWGG 3 cut(s) 154, 803, 825
AleI CACNNNNGTG 1 cut(s) 485
Alw21I GWGCWC 1 cut(s) 595
AlwI GGATC 1 cut(s) 406
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 3 cut(s) 254, 260, 823
ApeKI GCWGC 6 cut(s) 299, 302, 461, 623, 812, 1043
Asp700I GAANNNNTTC 1 cut(s) 759
AspS9I GGNCC 3 cut(s) 88, 152, 391
AsuHPI GGTGA 3 cut(s) 386, 539, 1001
AsuII TTCGAA 1 cut(s) 286
AvaII GGWCC 3 cut(s) 88, 152, 391
AxyI CCTNAGG 2 cut(s) 92, 906
BalI TGGCCA 1 cut(s) 825
BanI GGYRCC 2 cut(s) 233, 800
BanII GRGCYC 1 cut(s) 576
BbrPI CACGTG 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 6 cut(s) 289, 311, 448, 635, 799, 1030
BccI CCATC 5 cut(s) 527, 585, 824, 980, 1043
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BciT130I CCWGG 3 cut(s) 156, 805, 827
BciVI GTATCC 1 cut(s) 623
BclI TGATCA 1 cut(s) 327
BfaI CTAG 2 cut(s) 1023, 1095
BfmI CTRYAG 1 cut(s) 951
BfuI GTATCC 1 cut(s) 623
BglII AGATCT 1 cut(s) 269
BisI GCNGC 8 cut(s) 254, 300, 303, 462, 624, 795, 813, 1044
BlsI GCNGC 8 cut(s) 255, 301, 304, 463, 625, 796, 814, 1045
Bme1390I CCNGG 3 cut(s) 156, 805, 827
Bme18I GGWCC 3 cut(s) 88, 152, 391
BmgT120I GGNCC 3 cut(s) 88, 152, 391
BmiI GGNNCC 3 cut(s) 235, 392, 802
BmrFI CCNGG 3 cut(s) 156, 805, 827
BmsI GCATC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 214
Bpu14I TTCGAA 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 617
BsaAI YACGTR 1 cut(s) 846
BsaJI CCNNGG 3 cut(s) 257, 394, 783
Bsc4I CCNNNNNNNGG 1 cut(s) 587
Bse1I ACTGG 1 cut(s) 90
Bse21I CCTNAGG 2 cut(s) 92, 906
Bse3DI GCAATG 3 cut(s) 165, 934, 1115
BseBI CCWGG 3 cut(s) 156, 805, 827
BseDI CCNNGG 3 cut(s) 257, 394, 783
BseGI GGATG 2 cut(s) 577, 835
BseLI CCNNNNNNNGG 1 cut(s) 587
BseMI GCAATG 3 cut(s) 165, 934, 1115
BseMII CTCAG 2 cut(s) 83, 228
BseNI ACTGG 1 cut(s) 90
BseXI GCAGC 6 cut(s) 289, 311, 448, 635, 799, 1030
BseYI CCCAGC 2 cut(s) 305, 338
BsgI GTGCAG 1 cut(s) 826
BshFI GGCC 3 cut(s) 256, 262, 825
BshNI GGYRCC 2 cut(s) 233, 800
BsiHKAI GWGCWC 1 cut(s) 595
BslI CCNNNNNNNGG 1 cut(s) 587
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 3 cut(s) 256, 262, 825
Bsp119I TTCGAA 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 576, 595
Bsp143I GATC 3 cut(s) 269, 327, 398
Bsp19I CCATGG 1 cut(s) 783
BspACI CCGC 5 cut(s) 72, 253, 311, 794, 1071
BspANI GGCC 3 cut(s) 256, 262, 825
BspCNI CTCAG 2 cut(s) 84, 227
BspLI GGNNCC 3 cut(s) 235, 392, 802
BspPI GGATC 1 cut(s) 406
BspT104I TTCGAA 1 cut(s) 286
BspT107I GGYRCC 2 cut(s) 233, 800
BsrDI GCAATG 3 cut(s) 165, 934, 1115
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 3 cut(s) 257, 394, 783
BssMI GATC 3 cut(s) 269, 327, 398
BssT1I CCWWGG 2 cut(s) 394, 783
Bst2UI CCWGG 3 cut(s) 156, 805, 827
Bst4CI ACNGT 2 cut(s) 190, 759
Bst6I CTCTTC 1 cut(s) 882
BstBAI YACGTR 1 cut(s) 846
BstBI TTCGAA 1 cut(s) 286
BstC8I GCNNGC 4 cut(s) 141, 459, 707, 810
BstDEI CTNAG 3 cut(s) 92, 214, 906
BstDSI CCRYGG 1 cut(s) 783
BstEII GGTNACC 2 cut(s) 409, 545
BstF5I GGATG 2 cut(s) 577, 835
BstKTI GATC 3 cut(s) 272, 330, 401
BstMBI GATC 3 cut(s) 269, 327, 398
BstMWI GCNNNNNNNGC 6 cut(s) 113, 259, 308, 702, 800, 809
BstNI CCWGG 3 cut(s) 156, 805, 827
BstNSI RCATGY 3 cut(s) 812, 947, 1135
BstPI GGTNACC 2 cut(s) 409, 545
BstSCI CCNGG 3 cut(s) 154, 803, 825
BstSFI CTRYAG 1 cut(s) 951
BstV1I GCAGC 6 cut(s) 289, 311, 448, 635, 799, 1030
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
Bsu36I CCTNAGG 2 cut(s) 92, 906
BsuI GTATCC 1 cut(s) 623
BsuRI GGCC 3 cut(s) 256, 262, 825
BtgI CCRYGG 1 cut(s) 783
BtsCI GGATG 2 cut(s) 577, 835
BtsIMutI CAGTG 2 cut(s) 237, 337
Cac8I GCNNGC 4 cut(s) 141, 459, 707, 810
CaiI CAGNNNCTG 1 cut(s) 305
Cfr13I GGNCC 3 cut(s) 88, 152, 391
CseI GACGC 1 cut(s) 35
CsiI ACCWGGT 1 cut(s) 154
Csp6I GTAC 1 cut(s) 605
CspCI CAANNNNNGTGG 2 cut(s) 954, 989
CviAII CATG 9 cut(s) 78, 230, 296, 716, 784, 809, 878, 944, 1132
CviQI GTAC 1 cut(s) 605
DdeI CTNAG 3 cut(s) 92, 214, 906
DpnI GATC 3 cut(s) 271, 329, 400
DpnII GATC 3 cut(s) 269, 327, 398
EaeI YGGCCR 2 cut(s) 260, 823
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Eco130I CCWWGG 2 cut(s) 394, 783
Eco24I GRGCYC 1 cut(s) 576
Eco47I GGWCC 3 cut(s) 88, 152, 391
Eco57I CTGAAG 1 cut(s) 761
Eco72I CACGTG 1 cut(s) 846
Eco81I CCTNAGG 2 cut(s) 92, 906
Eco91I GGTNACC 2 cut(s) 409, 545
EcoO65I GGTNACC 2 cut(s) 409, 545
EcoRII CCWGG 3 cut(s) 154, 803, 825
EcoT14I CCWWGG 2 cut(s) 394, 783
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 2 cut(s) 394, 783
FaeI CATG 9 cut(s) 81, 233, 299, 719, 787, 812, 881, 947, 1135
FatI CATG 9 cut(s) 77, 229, 295, 715, 783, 808, 877, 943, 1131
FauI CCCGC 1 cut(s) 304
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 8 cut(s) 254, 300, 303, 462, 624, 795, 813, 1044
FokI GGATG 2 cut(s) 564, 842
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 8 cut(s) 254, 300, 303, 462, 624, 795, 813, 1044
FspBI CTAG 2 cut(s) 1023, 1095
GluI GCNGC 8 cut(s) 254, 300, 303, 462, 624, 795, 813, 1044
GsaI CCCAGC 2 cut(s) 309, 342
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 3 cut(s) 256, 262, 825
HgaI GACGC 1 cut(s) 35
Hin1II CATG 9 cut(s) 81, 233, 299, 719, 787, 812, 881, 947, 1135
HincII GTYRAC 1 cut(s) 1129
HindII GTYRAC 1 cut(s) 1129
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 4 cut(s) 365, 431, 896, 1016
HphI GGTGA 3 cut(s) 386, 539, 1001
Hpy166II GTNNAC 3 cut(s) 193, 679, 1129
Hpy188I TCNGA 3 cut(s) 125, 269, 982
Hpy188III TCNNGA 4 cut(s) 50, 91, 216, 723
Hpy8I GTNNAC 3 cut(s) 193, 679, 1129
HpyAV CCTTC 6 cut(s) 120, 337, 355, 494, 650, 785
HpyCH4III ACNGT 2 cut(s) 190, 759
HpyCH4IV ACGT 1 cut(s) 845
HpyCH4V TGCA 9 cut(s) 277, 299, 457, 464, 616, 623, 843, 943, 1120
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 259, 308, 702, 800, 809
HpyF3I CTNAG 3 cut(s) 92, 214, 906
HpySE526I ACGT 1 cut(s) 845
Hsp92II CATG 9 cut(s) 81, 233, 299, 719, 787, 812, 881, 947, 1135
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 269, 327, 398
LmnI GCTCC 2 cut(s) 590, 907
Lsp1109I GCAGC 6 cut(s) 289, 311, 448, 635, 799, 1030
LweI GCATC 1 cut(s) 325
MabI ACCWGGT 1 cut(s) 154
MaeI CTAG 2 cut(s) 1023, 1095
MaeII ACGT 1 cut(s) 845
MaeIII GTNAC 5 cut(s) 158, 172, 409, 545, 860
MalI GATC 3 cut(s) 271, 329, 400
MboI GATC 3 cut(s) 269, 327, 398
MboII GAAGA 3 cut(s) 469, 899, 995
MfeI CAATTG 3 cut(s) 144, 422, 465
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 2 cut(s) 576, 595
MlsI TGGCCA 1 cut(s) 825
MluCI AATT 8 cut(s) 53, 144, 288, 422, 465, 618, 1036, 1142
MluNI TGGCCA 1 cut(s) 825
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 6 cut(s) 87, 106, 238, 267, 309, 1114
Mox20I TGGCCA 1 cut(s) 825
MroXI GAANNNNTTC 1 cut(s) 759
MscI TGGCCA 1 cut(s) 825
MseI TTAA 2 cut(s) 24, 1109
MslI CAYNNNNRTG 3 cut(s) 170, 485, 882
Msp20I TGGCCA 1 cut(s) 825
MspA1I CMGCKG 3 cut(s) 302, 485, 626
MspR9I CCNGG 3 cut(s) 156, 805, 827
MunI CAATTG 3 cut(s) 144, 422, 465
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 3 cut(s) 156, 805, 827
MwoI GCNNNNNNNGC 6 cut(s) 113, 259, 308, 702, 800, 809
NcoI CCATGG 1 cut(s) 783
NdeII GATC 3 cut(s) 269, 327, 398
NlaIII CATG 9 cut(s) 81, 233, 299, 719, 787, 812, 881, 947, 1135
NlaIV GGNNCC 3 cut(s) 235, 392, 802
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 3 cut(s) 158, 172, 545
NspI RCATGY 3 cut(s) 812, 947, 1135
NspV TTCGAA 1 cut(s) 286
OliI CACNNNNGTG 1 cut(s) 485
PaeI GCATGC 1 cut(s) 812
PciI ACATGT 1 cut(s) 1131
PctI GAATGC 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 759
PfeI GAWTC 3 cut(s) 431, 896, 1016
PflFI GACNNNGTC 1 cut(s) 156
PkrI GCNGC 8 cut(s) 255, 301, 304, 463, 625, 796, 814, 1045
PleI GAGTC 1 cut(s) 359
PmaCI CACGTG 1 cut(s) 846
PmlI CACGTG 1 cut(s) 846
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 846
PscI ACATGT 1 cut(s) 1131
Psp6I CCWGG 3 cut(s) 154, 803, 825
PspCI CACGTG 1 cut(s) 846
PspEI GGTNACC 2 cut(s) 409, 545
PspFI CCCAGC 2 cut(s) 305, 338
PspGI CCWGG 3 cut(s) 154, 803, 825
PspN4I GGNNCC 3 cut(s) 235, 392, 802
PspPI GGNCC 3 cut(s) 88, 152, 391
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 156
PvuII CAGCTG 3 cut(s) 302, 485, 626
RsaI GTAC 1 cut(s) 606
RsaNI GTAC 1 cut(s) 605
RseI CAYNNNNRTG 3 cut(s) 170, 485, 882
SaqAI TTAA 2 cut(s) 24, 1109
SatI GCNGC 8 cut(s) 254, 300, 303, 462, 624, 795, 813, 1044
Sau3AI GATC 3 cut(s) 269, 327, 398
Sau96I GGNCC 3 cut(s) 88, 152, 391
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 3 cut(s) 156, 805, 827
SduI GDGCHC 2 cut(s) 576, 595
SexAI ACCWGGT 1 cut(s) 154
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 951
SfuI TTCGAA 1 cut(s) 286
SinI GGWCC 3 cut(s) 88, 152, 391
SmiMI CAYNNNNRTG 3 cut(s) 170, 485, 882
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
SphI GCATGC 1 cut(s) 812
Sse9I AATT 8 cut(s) 53, 144, 288, 422, 465, 618, 1036, 1142
SsiI CCGC 5 cut(s) 72, 253, 311, 794, 1071
SspMI CTAG 2 cut(s) 1023, 1095
StyD4I CCNGG 3 cut(s) 154, 803, 825
StyI CCWWGG 2 cut(s) 394, 783
TaaI ACNGT 2 cut(s) 190, 759
TaiI ACGT 1 cut(s) 848
TaqI TCGA 1 cut(s) 286
TasI AATT 8 cut(s) 53, 144, 288, 422, 465, 618, 1036, 1142
TauI GCSGC 2 cut(s) 256, 797
TfiI GAWTC 3 cut(s) 431, 896, 1016
Tru1I TTAA 2 cut(s) 24, 1109
Tru9I TTAA 2 cut(s) 24, 1109
TscAI CASTG 2 cut(s) 244, 337
TseFI GTSAC 3 cut(s) 158, 172, 545
TseI GCWGC 6 cut(s) 299, 302, 461, 623, 812, 1043
Tsp45I GTSAC 3 cut(s) 158, 172, 545
TspDTI ATGAA 5 cut(s) 66, 284, 900, 990, 1071
TspRI CASTG 2 cut(s) 244, 337
Tth111I GACNNNGTC 1 cut(s) 156
VpaK11BI GGWCC 3 cut(s) 88, 152, 391
XceI RCATGY 3 cut(s) 812, 947, 1135
XcmI CCANNNNNNNNNTGG 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 759
XspI CTAG 2 cut(s) 1023, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.