Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002099

Physical Location & Seq

Genomic Coordinates Forward (+)

42870002 .. 42872716

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0256000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTTTGGTTTTTGCTGTAAAAGATTGCAATTACTGCTTCCAAGTTTTAGCACTTCTGTTGATTCAGTGACCCATTTACATTGCTTCCGCAAAGCATCTCACTTTAGCCGATCATATTCATCCAAATCATTATTAGGTAGTGAAATAGATAAACCCAAAGAGAAAGATGGCTCTTTTACAGTTTCATACCTTGTAAACTCATGTGGGTTGTCACCAGAAGTTGCTCTCTCTTTGTCCAAGAAGAGGGTACACTTCAAATCCAGAGAGAAACCAGACTCGGTTATTAAGCTTCTGAAACACTACGGATTCAATGACACATCCATATCCCAACTTGTTAAGAAATTCCCAGAAGTGCTTGGGGTTAAACCTGAGAAGACCCTTTTGCCCAAACTAGAGTTTTTCAGTTCTATTGGCCTCTCAGGCATTGACATTGCTCGGGCTCTTTGCAGCAACCCAAGTATTTTGAAACGAAATGTAGATAGAAATCTCAGGCCGTGTTATGATATCATCAAAAGTATACTTGTTTCCGACTTAGAGGTTGTTGATTTCTTTAAGAATTCCTATCAGCTGTTGACGGTCAAATCAGTAAGCAACATTGCTCAGAATGTTTCAGTTCTGAGAAAACTTAAGGTGCCAGAGTCTTCAATCTCTTACTATGCGACGTGTCAGCCCTTTGTAATGTCCCTTGAAAAAGAGAAGTTTCACCAAAATGTCAACAAAGTCATGAGTTTGGGATTCCACCCTTCAACATCAACGACGTTCATGAAAGCACTATTTGTGATCTCCACTACGGATTCATCAAAATGGGCACAAAAGATGGATTTCTATAAAAAGTGTGGTTGGACTGAAGATGACTTTTTGGTGGCATTTAGTAAGAATCCCCTCTTTATGAACATGACAGAGAAGAATATTTCTAGTAAAATGGATTTTATTGTCAACAAAATGGCTTTGGTTCAGCCTGCAGATTTGGCTCATTATCCGACTGTCCTAACTTATAGTTTGGAGAATCGGATACTACCTAGGGCTTCAGTTATTAGAGTTCTCCTGATGAAGGGCTTAATAACAAGGGGAGATTTTTCTTTCAACAGCTTAATGACATACAATAATAAGAAGTTCTTGGATAAGTTTGTGGTCCCATATCAACCACAAGTACCTGAATTGTTGAGCATCTTTGCAGGGAAAATGGGTCTTGTGGAACTGGGCATTAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1

Protein Analysis

404

Amino Acids

45.73

Weight (kDa)

9.55

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	95 - 304	1.1e-24	mTERF
mTERF	PF02536	224 - 373	1.1e-17	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26100 AT3G26100 AT3G26100 AT3G26100 AT3G26100 AT3G26100
fragaria_vesca	FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091 FvH4_4g25091
malus_domestica	MD07G1091600.v1.1 MD13G1106500.v1.1 MD16G1106600.v1.1
prunus_persica	Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1 Prupe.1G239800_v2.0.a1
pyrus_communis	pycom07g07490 pycom13g09230 pycom16g09080
rosa_chinensis	RchiOBHm_Chr4g0432281
rosa_laevigata	RLG00000006857
rosa_multiflora	Rmu_sc0001084.1_g000045
rosa_roxburghii	Rroxscaffold_5G00373740
rosa_rugosa	Rorug04G0256000 Rorug04G0256100 Rorug04G0256200 Rorug04G0256300 Rorug04G0256400 Rorug04G0256400 Rorug04G0256400
rosa_samantha	Rh4AG313000 Rh4BG320600 Rh4CG335800 Rh4DG316000
rosa_wichuraiana	Rw4G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	631
AccI	GTMKAC	1 cut(s)	517
AciI	CCGC	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	341, 556
AcuI	CTGAAG	2 cut(s)	867, 1011
AfaI	GTAC	2 cut(s)	249, 1152
AfiI	CCNNNNNNNGG	2 cut(s)	243, 1051
AflII	CTTAAG	1 cut(s)	626
AflIII	ACRYGT	1 cut(s)	662
AgsI	TTSAA	7 cut(s)	256, 310, 466, 645, 689, 747, 1084
AjiI	CACGTC	1 cut(s)	663
AluBI	AGCT	3 cut(s)	289, 568, 1089
AluI	AGCT	3 cut(s)	289, 568, 1089
Ama87I	CYCGRG	1 cut(s)	435
AoxI	GGCC	2 cut(s)	412, 491
ApeKI	GCWGC	1 cut(s)	447
ApoI	RAATTY	2 cut(s)	341, 556
AspA2I	CCTAGG	1 cut(s)	1019
AspS9I	GGNCC	1 cut(s)	1132
AsuHPI	GGTGA	2 cut(s)	204, 695
AvaI	CYCGRG	1 cut(s)	435
AvaII	GGWCC	1 cut(s)	1132
AvrII	CCTAGG	1 cut(s)	1019
BaeGI	GKGCMC	1 cut(s)	811
BanI	GGYRCC	1 cut(s)	631
BanII	GRGCYC	1 cut(s)	442
BbsI	GAAGAC	2 cut(s)	380, 633
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	2 cut(s)	161, 811
BceAI	ACGGC	1 cut(s)	478
BciVI	GTATCC	1 cut(s)	1005
BfaI	CTAG	3 cut(s)	392, 915, 1020
BfmI	CTRYAG	1 cut(s)	960
BfrI	CTTAAG	1 cut(s)	626
BfuI	GTATCC	1 cut(s)	1005
BglI	GCCNNNNNGGC	1 cut(s)	420
BisI	GCNGC	1 cut(s)	448
BlnI	CCTAGG	1 cut(s)	1019
BlsI	GCNGC	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	1132
BmeT110I	CYCGRG	1 cut(s)	435
BmgBI	CACGTC	1 cut(s)	663
BmgT120I	GGNCC	1 cut(s)	1132
BmiI	GGNNCC	2 cut(s)	633, 1134
BmrI	ACTGGG	1 cut(s)	1208
BmsI	GCATC	2 cut(s)	104, 1176
BmuI	ACTGGG	1 cut(s)	1208
BpiI	GAAGAC	2 cut(s)	380, 633
BsaBI	GATNNNNATC	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	1019
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 1051
Bse1I	ACTGG	1 cut(s)	1203
Bse3DI	GCAATG	3 cut(s)	79, 429, 594
Bse8I	GATNNNNATC	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	1019
BseGI	GGATG	2 cut(s)	119, 317
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	243, 1051
BseMI	GCAATG	3 cut(s)	79, 429, 594
BseMII	CTCAG	5 cut(s)	360, 432, 502, 608, 614
BseNI	ACTGG	1 cut(s)	1203
BseSI	GKGCMC	1 cut(s)	811
BseXI	GCAGC	1 cut(s)	459
BshFI	GGCC	2 cut(s)	414, 493
BshNI	GGYRCC	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	435
BslFI	GGGAC	2 cut(s)	667, 1118
BslI	CCNNNNNNNGG	2 cut(s)	243, 1051
BsmFI	GGGAC	2 cut(s)	667, 1118
BsnI	GGCC	2 cut(s)	414, 493
BsoBI	CYCGRG	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	442, 811
Bsp143I	GATC	2 cut(s)	110, 780
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	414, 493
BspCNI	CTCAG	5 cut(s)	361, 431, 501, 609, 613
BspHI	TCATGA	2 cut(s)	723, 762
BspLI	GGNNCC	2 cut(s)	633, 1134
BspMAI	CTGCAG	1 cut(s)	964
BspT107I	GGYRCC	1 cut(s)	631
BspTI	CTTAAG	1 cut(s)	626
BsrDI	GCAATG	3 cut(s)	79, 429, 594
BsrI	ACTGG	1 cut(s)	1203
BssECI	CCNNGG	1 cut(s)	1019
BssMI	GATC	2 cut(s)	110, 780
BssNAI	GTATAC	1 cut(s)	518
BssT1I	CCWWGG	1 cut(s)	1019
Bst1107I	GTATAC	1 cut(s)	518
Bst4CI	ACNGT	3 cut(s)	181, 577, 985
Bst6I	CTCTTC	1 cut(s)	236
BstAFI	CTTAAG	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	960
BstDEI	CTNAG	6 cut(s)	369, 418, 488, 532, 600, 617
BstENI	CCTNNNNNAGG	1 cut(s)	1049
BstF5I	GGATG	2 cut(s)	119, 317
BstKTI	GATC	2 cut(s)	113, 783
BstMBI	GATC	2 cut(s)	110, 780
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 420, 968
BstSFI	CTRYAG	1 cut(s)	960
BstSLI	GKGCMC	1 cut(s)	811
BstV1I	GCAGC	1 cut(s)	459
BstV2I	GAAGAC	2 cut(s)	380, 633
BstZ17I	GTATAC	1 cut(s)	518
BsuI	GTATCC	1 cut(s)	1005
BsuRI	GGCC	2 cut(s)	414, 493
BtrI	CACGTC	1 cut(s)	663
BtsCI	GGATG	2 cut(s)	119, 317
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	960
CciI	TCATGA	2 cut(s)	723, 762
Cfr13I	GGNCC	1 cut(s)	1132
Csp6I	GTAC	2 cut(s)	248, 1151
CviAII	CATG	4 cut(s)	201, 724, 763, 895
CviQI	GTAC	2 cut(s)	248, 1151
DdeI	CTNAG	6 cut(s)	369, 418, 488, 532, 600, 617
DpnI	GATC	2 cut(s)	112, 782
DpnII	GATC	2 cut(s)	110, 780
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	1019
Eco24I	GRGCYC	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	1132
Eco57I	CTGAAG	2 cut(s)	867, 1011
Eco88I	CYCGRG	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	1049
EcoRI	GAATTC	1 cut(s)	556
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	1019
EcoT38I	GRGCYC	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	1019
FaeI	CATG	4 cut(s)	204, 727, 766, 898
FalI	AAGNNNNNCTT	2 cut(s)	1100, 1132
FaqI	GGGAC	2 cut(s)	667, 1118
FatI	CATG	4 cut(s)	200, 723, 762, 894
FblI	GTMKAC	1 cut(s)	517
Fnu4HI	GCNGC	1 cut(s)	448
FokI	GGATG	2 cut(s)	106, 304
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	1 cut(s)	448
FspBI	CTAG	3 cut(s)	392, 915, 1020
GluI	GCNGC	1 cut(s)	448
HaeIII	GGCC	2 cut(s)	414, 493
Hin1II	CATG	4 cut(s)	204, 727, 766, 898
HincII	GTYRAC	3 cut(s)	573, 715, 937
HindII	GTYRAC	3 cut(s)	573, 715, 937
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	8 cut(s)	62, 275, 306, 638, 735, 794, 877, 1006
HphI	GGTGA	2 cut(s)	204, 695
Hpy166II	GTNNAC	6 cut(s)	196, 250, 518, 573, 715, 937
Hpy188I	TCNGA	6 cut(s)	294, 529, 603, 618, 981, 1011
Hpy188III	TCNNGA	4 cut(s)	261, 724, 763, 1045
Hpy8I	GTNNAC	6 cut(s)	196, 250, 518, 573, 715, 937
Hpy99I	CGWCG	2 cut(s)	664, 760
HpyAV	CCTTC	2 cut(s)	753, 1045
HpyCH4III	ACNGT	3 cut(s)	181, 577, 985
HpyCH4IV	ACGT	2 cut(s)	662, 758
HpyCH4V	TGCA	4 cut(s)	28, 447, 962, 1175
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 420, 968
HpyF3I	CTNAG	6 cut(s)	369, 418, 488, 532, 600, 617
HpySE526I	ACGT	2 cut(s)	662, 758
Hsp92II	CATG	4 cut(s)	204, 727, 766, 898
Kzo9I	GATC	2 cut(s)	110, 780
Lsp1109I	GCAGC	1 cut(s)	459
LweI	GCATC	2 cut(s)	104, 1176
MaeI	CTAG	3 cut(s)	392, 915, 1020
MaeII	ACGT	2 cut(s)	662, 758
MaeIII	GTNAC	2 cut(s)	67, 210
MalI	GATC	2 cut(s)	112, 782
MboI	GATC	2 cut(s)	110, 780
MboII	GAAGA	5 cut(s)	253, 385, 633, 860, 916
MhlI	GDGCHC	2 cut(s)	442, 811
MluCI	AATT	4 cut(s)	29, 341, 556, 1157
MlyI	GAGTC	2 cut(s)	269, 647
MmeI	TCCRAC	3 cut(s)	552, 821, 1004
MnlI	CCTC	4 cut(s)	237, 425, 529, 893
MseI	TTAA	7 cut(s)	285, 336, 363, 552, 627, 1058, 1091
MslI	CAYNNNNRTG	2 cut(s)	708, 802
MspA1I	CMGCKG	1 cut(s)	568
MspCI	CTTAAG	1 cut(s)	626
MwoI	GCNNNNNNNGC	3 cut(s)	34, 420, 968
NdeII	GATC	2 cut(s)	110, 780
NlaIII	CATG	4 cut(s)	204, 727, 766, 898
NlaIV	GGNNCC	2 cut(s)	633, 1134
NmuCI	GTSAC	2 cut(s)	67, 210
PagI	TCATGA	2 cut(s)	723, 762
PfeI	GAWTC	6 cut(s)	62, 306, 735, 794, 877, 1006
PkrI	GCNGC	1 cut(s)	449
PleI	GAGTC	2 cut(s)	269, 646
PpsI	GAGTC	2 cut(s)	269, 646
PspN4I	GGNNCC	2 cut(s)	633, 1134
PspPI	GGNCC	1 cut(s)	1132
PstI	CTGCAG	1 cut(s)	964
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	2 cut(s)	249, 1152
RsaNI	GTAC	2 cut(s)	248, 1151
RseI	CAYNNNNRTG	2 cut(s)	708, 802
SaqAI	TTAA	7 cut(s)	285, 336, 363, 552, 627, 1058, 1091
SatI	GCNGC	1 cut(s)	448
Sau3AI	GATC	2 cut(s)	110, 780
Sau96I	GGNCC	1 cut(s)	1132
SchI	GAGTC	2 cut(s)	269, 647
SduI	GDGCHC	2 cut(s)	442, 811
SfaNI	GCATC	2 cut(s)	104, 1176
SfcI	CTRYAG	1 cut(s)	960
SinI	GGWCC	1 cut(s)	1132
SmiMI	CAYNNNNRTG	2 cut(s)	708, 802
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	4 cut(s)	29, 341, 556, 1157
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	1 cut(s)	910
SspMI	CTAG	3 cut(s)	392, 915, 1020
StyI	CCWWGG	1 cut(s)	1019
TaaI	ACNGT	3 cut(s)	181, 577, 985
TaiI	ACGT	2 cut(s)	665, 761
TasI	AATT	4 cut(s)	29, 341, 556, 1157
TfiI	GAWTC	6 cut(s)	62, 306, 735, 794, 877, 1006
Tru1I	TTAA	7 cut(s)	285, 336, 363, 552, 627, 1058, 1091
Tru9I	TTAA	7 cut(s)	285, 336, 363, 552, 627, 1058, 1091
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	2 cut(s)	67, 210
TseI	GCWGC	1 cut(s)	447
Tsp45I	GTSAC	2 cut(s)	67, 210
TspDTI	ATGAA	7 cut(s)	108, 174, 751, 779, 786, 905, 1064
TspGWI	ACGGA	2 cut(s)	318, 806
TspRI	CASTG	1 cut(s)	72
Vha464I	CTTAAG	1 cut(s)	626
VpaK11BI	GGWCC	1 cut(s)	1132
XagI	CCTNNNNNAGG	1 cut(s)	1049
XapI	RAATTY	2 cut(s)	341, 556
XmaJI	CCTAGG	1 cut(s)	1019
XmiI	GTMKAC	1 cut(s)	517
XspI	CTAG	3 cut(s)	392, 915, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.