FvH4_4g25091

ultraviolet-B receptor UVR8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002099
Physical Location & Seq
Forward (+)
27002711 .. 27007145
4435 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25091.t9

Sequence Viewer

Length: 1608 bp
ATGGATGCCACAGCAAGCGGAACCCCAACCATACAATACCATAACATTCCTGACCAGCCAATTACCACCATTGTTGCCACTCCTGTACCAACATATGAAAGGCGGCAACGCCATTGCTTTGGGACCTCCTCAACCCCTGGAGAGTTCCCTTTAGCTGCCAACCCCTCAATTGTCCTTCATGTCCTTACTGCTTGTAATTTGGACCCTCAAGACCTTGCAAAGTTAGAGGGAACATGTTCCTTTTTCAGGCAGCCTGCAAACTTTGCTCCTGACTTTGACTTGTGCATATCTGAGCTTGCTGCTCTGGACATGTGCCAAAAGAGAGCTATATTCAAGCCAATGACAACTGAACAGCGTCAAGAATTGAAGCAAAAATGTGGCGGTTCATGGAAACTGGTCCTGAGGTTTCTATTGGCTGGAGAAGCATGTTTCAGAAGGGAGAAATCGCAGGCAATAGCTGGACCTGGCCACAGCATTGCTGTGACTTCTAAAGGAACTGCCTACTCATTTGGTTCTAACAGCTCAGGACAGCTTGGACATGGCACAACTGAAGAGGAATGGCGGCCTAAGCCAATCAGATCTCTGCAAGGCATACGAATTATTCATGCAGCTGCTGGCGCTGGTAGGACAATGCTGATCAGTGATGCTGGGAAGGTGTATCACTTTGGGAAGGACTCTTTTGGTGAGACTGAGTACGGGGTTCAAGGATCAAAGCTGGTTAGCACTCCACAGTTGGTTGAGTCCTTGAAAGATATATTTGTGGTGCAAGCTGCAATTGGAAATTTCTTCACAGCTGTGCTGTCAAGGGAAGGCAGGGTATATACAATTTCTTGGGGAAGTGATGACAAACTTGGTCACCAAACTGAACCAAATGATGTTGAGCCCCATCCTGTGTTGGGAGCACTTGAGCATGTACCTGTGGTGCAAATTGCAGCTGGGTACTGCTACCTTCTTGCTCTGGCTTGTCAGCCTAATGGAATGTCTGTTTACTCTGTTGGCTGTGGCTTGGGTGGTAAACTTGGGCATGGTTCAAGAACTGATGAGAAGCAGCCGCGACTGATTGAACAGTTTCAGCTTTTGAACCTTCAGCCCAAGGTGGTTGCGGCTGGTGCCTGGCATGCTGCTGTGGTTGGCCAGGATGGACGGGTTTGCACATGGGGTTGGGGTCGTTATGGGTGCTTGGGTCATGGGAATGAAGAGTGTGAATCAGCTCCTAAGGTTGTGGAAGCATTGAGCAATGTGAAAGCTGTGCATGTAGCTACAGGAGATTACACAACCTTTGTGGTTTCTGAAGAAGGGGATGTGTACTCATTTGGCTGTGGAGAATCAGCTAGTCTTGGACATAACTCCGCTGCTGATGGACAGGGAAATAGGCATGCAAATGTATTGGCTCCAGAGCTTGTGTCATCACTCAAGCAAGTAAATGAGCGGGTTGTACAGATCAGTCTCACCAATTCGATATACTGGAACGCTCACACTTTCGCACTCACTGAATCAGGGAAGCTATATGCATTTGGGGCAGGGGACAAAGGTCAACTAGGAATTGAGCTTGTTGCCAATCAGACTGAAAGGGGAAATCCAGAGCTGGTTGATATTGATCTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

536

Amino Acids

57.52

Weight (kDa)

6.03

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 149 - 483 5e-61 RCC1-like domain
RCC1_2 PF13540 153 - 177 8.8e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 164 - 213 3.9e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 380 - 429 6e-15 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1109
AccBSI CCGCTC 1 cut(s) 1429
AccII CGCG 1 cut(s) 1054
AciI CCGC 8 cut(s) 18, 103, 381, 562, 1052, 1103, 1350, 1429
AclWI GGATC 1 cut(s) 715
AcoI YGGCCR 2 cut(s) 466, 1132
AcsI RAATTY 1 cut(s) 781
AcuI CTGAAG 3 cut(s) 570, 1070, 1311
AfaI GTAC 6 cut(s) 87, 695, 915, 941, 1307, 1437
AfiI CCNNNNNNNGG 2 cut(s) 246, 896
AflIII ACRYGT 2 cut(s) 233, 309
AgsI TTSAA 7 cut(s) 334, 367, 704, 748, 1032, 1064, 1081
AjnI CCWGG 4 cut(s) 136, 463, 1112, 1134
AleI CACNNNNGTG 1 cut(s) 794
Alw21I GWGCWC 1 cut(s) 904
Alw26I GTCTC 2 cut(s) 680, 1451
AlwI GGATC 1 cut(s) 715
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 3 cut(s) 466, 563, 1132
ApoI RAATTY 1 cut(s) 781
Asp700I GAANNNNTTC 2 cut(s) 235, 1068
AspLEI GCGC 1 cut(s) 620
AspS9I GGNCC 4 cut(s) 123, 202, 397, 461
AsuHPI GGTGA 3 cut(s) 695, 848, 1441
AvaII GGWCC 4 cut(s) 123, 202, 397, 461
AxyI CCTNAGG 2 cut(s) 401, 1215
BaeI ACNNNNGTAYC 2 cut(s) 69, 102
BalI TGGCCA 2 cut(s) 468, 1134
BanI GGYRCC 1 cut(s) 1109
BanII GRGCYC 1 cut(s) 885
Bbv12I GWGCWC 1 cut(s) 904
BccI CCATC 3 cut(s) 894, 1133, 1352
BciT130I CCWGG 4 cut(s) 138, 465, 1114, 1136
BclI TGATCA 1 cut(s) 636
BcoDI GTCTC 2 cut(s) 680, 1451
BfaI CTAG 2 cut(s) 1332, 1538
BfmI CTRYAG 1 cut(s) 1260
BfoI RGCGCY 1 cut(s) 621
BglII AGATCT 1 cut(s) 578
Bme1390I CCNGG 4 cut(s) 138, 465, 1114, 1136
Bme18I GGWCC 4 cut(s) 123, 202, 397, 461
BmgT120I GGNCC 4 cut(s) 123, 202, 397, 461
BmiI GGNNCC 5 cut(s) 22, 124, 204, 1111, 1392
BmrFI CCNGG 4 cut(s) 138, 465, 1114, 1136
BmsI GCATC 1 cut(s) 634
BoxI GACNNNNGTC 1 cut(s) 1530
BpmI CTGGAG 3 cut(s) 159, 438, 1377
Bpu10I CCTNAGC 2 cut(s) 523, 567
BpuEI CTTGAG 3 cut(s) 192, 926, 1397
BsaBI GATNNNNATC 1 cut(s) 1596
BsaJI CCNNGG 2 cut(s) 136, 1092
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 896
Bse1I ACTGG 2 cut(s) 399, 1469
Bse21I CCTNAGG 2 cut(s) 401, 1215
Bse3DI GCAATG 3 cut(s) 112, 474, 1243
Bse8I GATNNNNATC 1 cut(s) 1596
BseBI CCWGG 4 cut(s) 138, 465, 1114, 1136
BseDI CCNNGG 2 cut(s) 136, 1092
BseGI GGATG 4 cut(s) 10, 886, 1144, 1306
BseJI GATNNNNATC 1 cut(s) 1596
BseLI CCNNNNNNNGG 2 cut(s) 246, 896
BseMI GCAATG 3 cut(s) 112, 474, 1243
BseMII CTCAG 4 cut(s) 282, 392, 537, 681
BseNI ACTGG 2 cut(s) 399, 1469
BseRI GAGGAG 1 cut(s) 118
BseYI CCCAGC 2 cut(s) 647, 935
Bsh1236I CGCG 1 cut(s) 1054
BshFI GGCC 3 cut(s) 468, 565, 1134
BshNI GGYRCC 1 cut(s) 1109
BsiHKAI GWGCWC 1 cut(s) 904
BslFI GGGAC 2 cut(s) 136, 1538
BslI CCNNNNNNNGG 2 cut(s) 246, 896
BsmAI GTCTC 2 cut(s) 680, 1451
BsmFI GGGAC 2 cut(s) 136, 1538
BsnI GGCC 3 cut(s) 468, 565, 1134
Bsp1286I GDGCHC 2 cut(s) 885, 904
Bsp1407I TGTACA 1 cut(s) 1435
Bsp143I GATC 5 cut(s) 578, 636, 707, 1440, 1597
BspACI CCGC 8 cut(s) 18, 103, 381, 562, 1052, 1103, 1350, 1429
BspANI GGCC 3 cut(s) 468, 565, 1134
BspCNI CTCAG 4 cut(s) 283, 393, 536, 682
BspFNI CGCG 1 cut(s) 1054
BspLI GGNNCC 5 cut(s) 22, 124, 204, 1111, 1392
BspPI GGATC 1 cut(s) 715
BspT107I GGYRCC 1 cut(s) 1109
BsrBI CCGCTC 1 cut(s) 1429
BsrDI GCAATG 3 cut(s) 112, 474, 1243
BsrGI TGTACA 1 cut(s) 1435
BsrI ACTGG 2 cut(s) 399, 1469
BssECI CCNNGG 2 cut(s) 136, 1092
BssMI GATC 5 cut(s) 578, 636, 707, 1440, 1597
BssT1I CCWWGG 1 cut(s) 1092
Bst2UI CCWGG 4 cut(s) 138, 465, 1114, 1136
Bst4CI ACNGT 2 cut(s) 732, 1068
Bst6I CTCTTC 2 cut(s) 546, 1191
BstAPI GCANNNNNTGC 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 1435
BstC8I GCNNGC 8 cut(s) 16, 255, 297, 450, 616, 768, 1119, 1377
BstDEI CTNAG 7 cut(s) 291, 401, 523, 567, 690, 1215, 1601
BstEII GGTNACC 1 cut(s) 854
BstENI CCTNNNNNAGG 1 cut(s) 244
BstF5I GGATG 4 cut(s) 10, 886, 1144, 1306
BstFNI CGCG 1 cut(s) 1054
BstH2I RGCGCY 1 cut(s) 621
BstHHI GCGC 1 cut(s) 620
BstKTI GATC 5 cut(s) 581, 639, 710, 1443, 1600
BstMAI GTCTC 2 cut(s) 680, 1451
BstMBI GATC 5 cut(s) 578, 636, 707, 1440, 1597
BstMWI GCNNNNNNNGC 7 cut(s) 263, 422, 568, 617, 1109, 1118, 1517
BstNI CCWGG 4 cut(s) 138, 465, 1114, 1136
BstNSI RCATGY 7 cut(s) 237, 313, 429, 914, 1121, 1256, 1379
BstPAI GACNNNNGTC 1 cut(s) 1530
BstPI GGTNACC 1 cut(s) 854
BstSCI CCNGG 4 cut(s) 136, 463, 1112, 1134
BstSFI CTRYAG 1 cut(s) 1260
BstUI CGCG 1 cut(s) 1054
BstX2I RGATCY 1 cut(s) 578
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 1 cut(s) 578
Bsu36I CCTNAGG 2 cut(s) 401, 1215
BsuRI GGCC 3 cut(s) 468, 565, 1134
BtsCI GGATG 4 cut(s) 10, 886, 1144, 1306
BtsIMutI CAGTG 2 cut(s) 646, 1488
Cac8I GCNNGC 8 cut(s) 16, 255, 297, 450, 616, 768, 1119, 1377
CaiI CAGNNNCTG 1 cut(s) 614
CfoI GCGC 1 cut(s) 620
Cfr13I GGNCC 4 cut(s) 123, 202, 397, 461
CseI GACGC 1 cut(s) 344
Csp6I GTAC 6 cut(s) 86, 694, 914, 940, 1306, 1436
CspCI CAANNNNNGTGG 4 cut(s) 55, 90, 1263, 1298
CviQI GTAC 6 cut(s) 86, 694, 914, 940, 1306, 1436
DdeI CTNAG 7 cut(s) 291, 401, 523, 567, 690, 1215, 1601
DpnI GATC 5 cut(s) 580, 638, 709, 1442, 1599
DpnII GATC 5 cut(s) 578, 636, 707, 1440, 1597
EaeI YGGCCR 2 cut(s) 466, 1132
Eam1104I CTCTTC 2 cut(s) 546, 1191
EarI CTCTTC 2 cut(s) 546, 1191
Eco130I CCWWGG 1 cut(s) 1092
Eco24I GRGCYC 1 cut(s) 885
Eco47I GGWCC 4 cut(s) 123, 202, 397, 461
Eco57I CTGAAG 3 cut(s) 570, 1070, 1311
Eco81I CCTNAGG 2 cut(s) 401, 1215
Eco91I GGTNACC 1 cut(s) 854
EcoNI CCTNNNNNAGG 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 123
EcoO65I GGTNACC 1 cut(s) 854
EcoRII CCWGG 4 cut(s) 136, 463, 1112, 1134
EcoT14I CCWWGG 1 cut(s) 1092
EcoT22I ATGCAT 1 cut(s) 1513
EcoT38I GRGCYC 1 cut(s) 885
ErhI CCWWGG 1 cut(s) 1092
FaqI GGGAC 2 cut(s) 136, 1538
FauI CCCGC 1 cut(s) 1422
FauNDI CATATG 1 cut(s) 94
FbaI TGATCA 1 cut(s) 636
FokI GGATG 4 cut(s) 17, 873, 1151, 1313
FriOI GRGCYC 1 cut(s) 885
FspBI CTAG 2 cut(s) 1332, 1538
GlaI GCGC 1 cut(s) 619
GsaI CCCAGC 2 cut(s) 651, 939
GsuI CTGGAG 3 cut(s) 159, 438, 1377
HaeII RGCGCY 1 cut(s) 621
HaeIII GGCC 3 cut(s) 468, 565, 1134
HgaI GACGC 1 cut(s) 344
HhaI GCGC 1 cut(s) 620
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HincII GTYRAC 1 cut(s) 1535
HindII GTYRAC 1 cut(s) 1535
HinfI GANTC 5 cut(s) 674, 740, 1205, 1325, 1493
HphI GGTGA 3 cut(s) 695, 848, 1441
Hpy166II GTNNAC 4 cut(s) 988, 1016, 1306, 1535
Hpy188I TCNGA 6 cut(s) 292, 434, 578, 1291, 1563, 1604
Hpy8I GTNNAC 4 cut(s) 988, 1016, 1306, 1535
HpyAV CCTTC 8 cut(s) 185, 429, 646, 664, 803, 959, 1094, 1289
HpyCH4III ACNGT 2 cut(s) 732, 1068
HpyF10VI GCNNNNNNNGC 7 cut(s) 263, 422, 568, 617, 1109, 1118, 1517
HpyF3I CTNAG 7 cut(s) 291, 401, 523, 567, 690, 1215, 1601
HspAI GCGC 1 cut(s) 618
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 5 cut(s) 578, 636, 707, 1440, 1597
LmnI GCTCC 4 cut(s) 271, 899, 1216, 1396
LweI GCATC 1 cut(s) 634
MaeI CTAG 2 cut(s) 1332, 1538
MaeIII GTNAC 2 cut(s) 481, 854
MalI GATC 5 cut(s) 580, 638, 709, 1442, 1599
MbiI CCGCTC 1 cut(s) 1429
MboI GATC 5 cut(s) 578, 636, 707, 1440, 1597
MboII GAAGA 4 cut(s) 563, 778, 1208, 1304
MfeI CAATTG 2 cut(s) 168, 774
MflI RGATCY 1 cut(s) 578
MhlI GDGCHC 2 cut(s) 885, 904
MlsI TGGCCA 2 cut(s) 468, 1134
MluNI TGGCCA 2 cut(s) 468, 1134
MlyI GAGTC 2 cut(s) 668, 749
MnlI CCTC 7 cut(s) 136, 139, 175, 216, 220, 396, 547
Mox20I TGGCCA 2 cut(s) 468, 1134
Mph1103I ATGCAT 1 cut(s) 1513
MroXI GAANNNNTTC 2 cut(s) 235, 1068
MscI TGGCCA 2 cut(s) 468, 1134
MslI CAYNNNNRTG 4 cut(s) 479, 794, 1191, 1380
Msp20I TGGCCA 2 cut(s) 468, 1134
MspA1I CMGCKG 4 cut(s) 611, 794, 935, 1352
MspR9I CCNGG 4 cut(s) 138, 465, 1114, 1136
MunI CAATTG 2 cut(s) 168, 774
MvaI CCWGG 4 cut(s) 138, 465, 1114, 1136
MvnI CGCG 1 cut(s) 1054
MwoI GCNNNNNNNGC 7 cut(s) 263, 422, 568, 617, 1109, 1118, 1517
NdeI CATATG 1 cut(s) 94
NdeII GATC 5 cut(s) 578, 636, 707, 1440, 1597
NlaIV GGNNCC 5 cut(s) 22, 124, 204, 1111, 1392
NmuCI GTSAC 2 cut(s) 481, 854
NsiI ATGCAT 1 cut(s) 1513
NspI RCATGY 7 cut(s) 237, 313, 429, 914, 1121, 1256, 1379
OliI CACNNNNGTG 1 cut(s) 794
PaeI GCATGC 2 cut(s) 1121, 1379
PciI ACATGT 2 cut(s) 233, 309
PdmI GAANNNNTTC 2 cut(s) 235, 1068
PfeI GAWTC 3 cut(s) 1205, 1325, 1493
PleI GAGTC 2 cut(s) 668, 748
PpsI GAGTC 2 cut(s) 668, 748
PpuMI RGGWCCY 1 cut(s) 123
PscI ACATGT 2 cut(s) 233, 309
PshAI GACNNNNGTC 1 cut(s) 1530
Psp5II RGGWCCY 1 cut(s) 123
Psp6I CCWGG 4 cut(s) 136, 463, 1112, 1134
PspEI GGTNACC 1 cut(s) 854
PspFI CCCAGC 2 cut(s) 647, 935
PspGI CCWGG 4 cut(s) 136, 463, 1112, 1134
PspN4I GGNNCC 5 cut(s) 22, 124, 204, 1111, 1392
PspPI GGNCC 4 cut(s) 123, 202, 397, 461
PspPPI RGGWCCY 1 cut(s) 123
PstNI CAGNNNCTG 1 cut(s) 614
PsuI RGATCY 1 cut(s) 578
PvuII CAGCTG 3 cut(s) 611, 794, 935
RsaI GTAC 6 cut(s) 87, 695, 915, 941, 1307, 1437
RsaNI GTAC 6 cut(s) 86, 694, 914, 940, 1306, 1436
RseI CAYNNNNRTG 4 cut(s) 479, 794, 1191, 1380
Sau3AI GATC 5 cut(s) 578, 636, 707, 1440, 1597
Sau96I GGNCC 4 cut(s) 123, 202, 397, 461
SchI GAGTC 2 cut(s) 668, 749
ScrFI CCNGG 4 cut(s) 138, 465, 1114, 1136
SduI GDGCHC 2 cut(s) 885, 904
SfaNI GCATC 1 cut(s) 634
SfcI CTRYAG 1 cut(s) 1260
SinI GGWCC 4 cut(s) 123, 202, 397, 461
SmiMI CAYNNNNRTG 4 cut(s) 479, 794, 1191, 1380
SmlI CTYRAG 3 cut(s) 207, 905, 1412
SmoI CTYRAG 3 cut(s) 207, 905, 1412
SphI GCATGC 2 cut(s) 1121, 1379
SsiI CCGC 8 cut(s) 18, 103, 381, 562, 1052, 1103, 1350, 1429
SspMI CTAG 2 cut(s) 1332, 1538
StyD4I CCNGG 4 cut(s) 136, 463, 1112, 1134
StyI CCWWGG 1 cut(s) 1092
TaaI ACNGT 2 cut(s) 732, 1068
TaqI TCGA 1 cut(s) 1457
TatI WGTACW 2 cut(s) 1305, 1435
TauI GCSGC 4 cut(s) 106, 565, 1054, 1106
TfiI GAWTC 3 cut(s) 1205, 1325, 1493
TscAI CASTG 2 cut(s) 646, 1495
TseFI GTSAC 2 cut(s) 481, 854
Tsp45I GTSAC 2 cut(s) 481, 854
TspDTI ATGAA 5 cut(s) 111, 167, 375, 593, 1209
TspRI CASTG 2 cut(s) 646, 1495
VpaK11BI GGWCC 4 cut(s) 123, 202, 397, 461
XagI CCTNNNNNAGG 1 cut(s) 244
XapI RAATTY 1 cut(s) 781
XceI RCATGY 7 cut(s) 237, 313, 429, 914, 1121, 1256, 1379
XmnI GAANNNNTTC 2 cut(s) 235, 1068
XspI CTAG 2 cut(s) 1332, 1538
Zsp2I ATGCAT 1 cut(s) 1513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.