pycom07g07490

ultraviolet-B receptor UVR8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002099
Physical Location & Seq
Forward (+)
6801031 .. 6801766
736 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g07490.2

Sequence Viewer

Length: 318 bp
ATGGCATATGGAAATAGACATGCAAATGTGTTGGCACCGGAGCTACCTAGTGACATCGTTGAAACTGGAACGCCCACACTTCTCACTCACCGAGTCAGGGATACTATATGCATTTGGGCCGGAGATAAAGGGCAAGTAGGCATTGAACTTGTTACCAACCGGACCGAAAGGGGAAAACCAAACTGGTCGATAATGATCTCAGATAGAGTTCATCATATCACCGGCTTCCCCGGCCACAACATAATAATCTATCATCTAATTTATCATCATAACTCATTGCGTATGATGTTTACATTTCCATGTCTATTGTGTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

106

Amino Acids

11.93

Weight (kDa)

7.85

Isoelectric Point (pI)

34.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 232
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 2 cut(s) 62, 146
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
AoxI GGCC 2 cut(s) 117, 232
AspS9I GGNCC 2 cut(s) 117, 162
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 80, 211
AvaII GGWCC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 34
BciVI GTATCC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 231
BfaI CTAG 1 cut(s) 48
BfuI GTATCC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 117, 162
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 229
BsaWI WCCGGW 2 cut(s) 37, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 70, 188
Bse3DI GCAATG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 229
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 2 cut(s) 70, 188
BshFI GGCC 2 cut(s) 119, 234
BshNI GGYRCC 1 cut(s) 34
BsiSI CCGG 5 cut(s) 38, 120, 160, 222, 231
BslI CCNNNNNNNGG 1 cut(s) 97
BsnI GGCC 2 cut(s) 119, 234
Bsp1407I TGTACA 1 cut(s) 311
Bsp143I GATC 1 cut(s) 195
BspANI GGCC 2 cut(s) 119, 234
BspCNI CTCAG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 221
BsrGI TGTACA 1 cut(s) 311
BsrI ACTGG 2 cut(s) 70, 188
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 1 cut(s) 195
BstAUI TGTACA 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 199
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 229
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 2 cut(s) 119, 234
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 2 cut(s) 117, 162
CpoI CGGWCCG 1 cut(s) 162
Csp6I GTAC 1 cut(s) 312
CspI CGGWCCG 1 cut(s) 162
CviAII CATG 2 cut(s) 20, 300
CviJI RGCY 4 cut(s) 43, 119, 225, 234
CviKI_1 RGCY 4 cut(s) 43, 119, 225, 234
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 1 cut(s) 199
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 113
FaeI CATG 2 cut(s) 23, 303
FatI CATG 2 cut(s) 19, 299
FauNDI CATATG 1 cut(s) 7
FspBI CTAG 1 cut(s) 48
HaeIII GGCC 2 cut(s) 119, 234
HapII CCGG 5 cut(s) 38, 120, 160, 222, 231
Hin1II CATG 2 cut(s) 23, 303
HinfI GANTC 1 cut(s) 93
HpaII CCGG 5 cut(s) 38, 120, 160, 222, 231
HphI GGTGA 2 cut(s) 80, 211
Hpy166II GTNNAC 2 cut(s) 291, 312
Hpy188I TCNGA 1 cut(s) 202
Hpy8I GTNNAC 2 cut(s) 291, 312
HpyCH4V TGCA 2 cut(s) 23, 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 199
Hsp92II CATG 2 cut(s) 23, 303
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 8 cut(s) 51, 51, 82, 133, 169, 173, 235, 244
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 2 cut(s) 50, 151
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MluCI AATT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 113
MslI CAYNNNNRTG 2 cut(s) 24, 298
MspI CCGG 5 cut(s) 38, 120, 160, 222, 231
MspR9I CCNGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 231
NciI CCSGG 1 cut(s) 231
NdeI CATATG 1 cut(s) 7
NdeII GATC 1 cut(s) 195
NlaIII CATG 2 cut(s) 23, 303
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 50
NsiI ATGCAT 1 cut(s) 113
NspI RCATGY 1 cut(s) 23
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 2 cut(s) 117, 162
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
RseI CAYNNNNRTG 2 cut(s) 24, 298
Rsr2I CGGWCCG 1 cut(s) 162
RsrII CGGWCCG 1 cut(s) 162
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 2 cut(s) 117, 162
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 1 cut(s) 231
SetI ASST 2 cut(s) 45, 49
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 2 cut(s) 24, 298
Sse9I AATT 1 cut(s) 258
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 229
TaqI TCGA 1 cut(s) 188
TaqII GACCGA 1 cut(s) 179
TasI AATT 1 cut(s) 258
TatI WGTACW 1 cut(s) 311
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 162
XceI RCATGY 1 cut(s) 23
XspI CTAG 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.