Rorug04G0256100

ultraviolet-B receptor UVR8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002099
Physical Location & Seq
Forward (+)
42881808 .. 42882490
683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0256100.1

Sequence Viewer

Length: 324 bp
ATGTCTGGGGTTTGGGTTTTCAAGAACGGCGTCGTCCGGCTGGTGGAGAACCCGGGGGCGGATTCCCTGCAGGGCTCCAGCCGGCGCAAGGTGTTGGTCCACACTCCCAGTGACGAGGTCATTACCTCTTACGCTGTGCTTGAGCGGAAGCTGCTCTCGCTTGGCTGGGAGAGGTACTACGACGACCCAGATCTCCTTCAGTACCACAAGCGATCCACCGTCCACCTCATCTCTCTCCCCAAGGATTTCAACAAGTTCAAGTCCATGCACATGTACGACATCGTCGTGAAGAACCGGAATCTGTTTGAAGTCAGGGACACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

107

Amino Acids

12.48

Weight (kDa)

9.26

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 145
AciI CCGC 2 cut(s) 59, 145
AclWI GGATC 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 3 cut(s) 176, 203, 275
AfiI CCNNNNNNNGG 3 cut(s) 43, 58, 88
AflIII ACRYGT 2 cut(s) 270, 318
AgsI TTSAA 4 cut(s) 22, 250, 259, 308
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
AlwI GGATC 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 151
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 2 cut(s) 53, 54
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 138
BceAI ACGGC 1 cut(s) 43
BcnI CCSGG 2 cut(s) 53, 54
BfmI CTRYAG 1 cut(s) 68
BglII AGATCT 1 cut(s) 190
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
Bme1390I CCNGG 2 cut(s) 53, 54
Bme18I GGWCC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 53, 54
BmrI ACTGGG 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 2 cut(s) 53, 54
BsaAI YACGTR 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 3 cut(s) 52, 53, 240
BsaWI WCCGGW 1 cut(s) 294
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 58, 88
Bse118I RCCGGY 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 52, 53, 240
BseLI CCNNNNNNNGG 3 cut(s) 43, 58, 88
BseNI ACTGG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 138
BseYI CCCAGC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 4 cut(s) 37, 53, 82, 295
BslI CCNNNNNNNGG 3 cut(s) 43, 58, 88
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 190, 212
BspACI CCGC 2 cut(s) 59, 145
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 1 cut(s) 207
BsrBI CCGCTC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 81
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 81
BssECI CCNNGG 3 cut(s) 52, 53, 240
BssMI GATC 2 cut(s) 190, 212
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 83
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 2 cut(s) 193, 215
BstMBI GATC 2 cut(s) 190, 212
BstMWI GCNNNNNNNGC 2 cut(s) 151, 157
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 51, 52
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 83
CfoI GCGC 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 97
Cfr9I CCCGGG 1 cut(s) 52
CseI GACGC 1 cut(s) 19
Csp6I GTAC 3 cut(s) 175, 202, 274
CviAII CATG 2 cut(s) 265, 271
CviJI RGCY 5 cut(s) 40, 75, 81, 151, 165
CviKI_1 RGCY 5 cut(s) 40, 75, 81, 151, 165
CviQI GTAC 3 cut(s) 175, 202, 274
DpnI GATC 2 cut(s) 192, 214
DpnII GATC 2 cut(s) 190, 212
EciI GGCGGA 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 268, 274
FaiI YATR 2 cut(s) 266, 272
FatI CATG 2 cut(s) 264, 270
Fnu4HI GCNGC 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 152
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 152
GsaI CCCAGC 1 cut(s) 169
GsuI CTGGAG 1 cut(s) 61
HapII CCGG 4 cut(s) 37, 53, 82, 295
HgaI GACGC 1 cut(s) 19
HhaI GCGC 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 268, 274
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 2 cut(s) 62, 298
HpaII CCGG 4 cut(s) 37, 53, 82, 295
Hpy166II GTNNAC 2 cut(s) 100, 223
Hpy188III TCNNGA 2 cut(s) 22, 286
Hpy8I GTNNAC 2 cut(s) 100, 223
Hpy99I CGWCG 3 cut(s) 35, 185, 287
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 70, 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 157
HpySE526I ACGT 1 cut(s) 320
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 268, 274
HspAI GCGC 1 cut(s) 85
KroI GCCGGC 1 cut(s) 81
KroNI GCCGGC 1 cut(s) 83
Kzo9I GATC 2 cut(s) 190, 212
LmnI GCTCC 1 cut(s) 80
Lsp1109I GCAGC 1 cut(s) 138
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 192, 214
MbiI CCGCTC 1 cut(s) 145
MboI GATC 2 cut(s) 190, 212
MboII GAAGA 1 cut(s) 301
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 77
MnlI CCTC 4 cut(s) 109, 136, 165, 236
MroNI GCCGGC 1 cut(s) 81
MslI CAYNNNNRTG 2 cut(s) 269, 284
MspI CCGG 4 cut(s) 37, 53, 82, 295
MspR9I CCNGG 2 cut(s) 53, 54
MwoI GCNNNNNNNGC 2 cut(s) 151, 157
NaeI GCCGGC 1 cut(s) 83
NciI CCSGG 2 cut(s) 53, 54
NdeII GATC 2 cut(s) 190, 212
NgoMIV GCCGGC 1 cut(s) 81
NlaIII CATG 2 cut(s) 268, 274
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 274
PciI ACATGT 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdiI GCCGGC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 62, 298
PflFI GACNNNGTC 2 cut(s) 116, 281
PkrI GCNGC 1 cut(s) 153
Ppu21I YACGTR 1 cut(s) 321
PscI ACATGT 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 97
PstI CTGCAG 1 cut(s) 72
PsuI RGATCY 1 cut(s) 190
PsyI GACNNNGTC 2 cut(s) 116, 281
RsaI GTAC 3 cut(s) 176, 203, 275
RsaNI GTAC 3 cut(s) 175, 202, 274
RseI CAYNNNNRTG 2 cut(s) 269, 284
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 2 cut(s) 190, 212
Sau96I GGNCC 1 cut(s) 97
SbfI CCTGCAGG 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 53, 54
SdaI CCTGCAGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 77
SetI ASST 7 cut(s) 93, 120, 128, 153, 176, 228, 323
SfcI CTRYAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 97
SmaI CCCGGG 1 cut(s) 54
SmiMI CAYNNNNRTG 2 cut(s) 269, 284
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse8387I CCTGCAGG 1 cut(s) 72
SsiI CCGC 2 cut(s) 59, 145
StyD4I CCNGG 2 cut(s) 51, 52
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 323
TfiI GAWTC 2 cut(s) 62, 298
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 110
TspMI CCCGGG 1 cut(s) 52
TspRI CASTG 1 cut(s) 115
Tth111I GACNNNGTC 2 cut(s) 116, 281
VpaK11BI GGWCC 1 cut(s) 97
XceI RCATGY 1 cut(s) 274
XmaI CCCGGG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.