AT3G27120

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012914
Physical Location & Seq
Reverse (-)
10000248 .. 10004306
4059 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27120.1

Sequence Viewer

Length: 2043 bp
ATGTGTGGGTCGGTGGTTTCAGATTCTGAGCGCGAATTTGAATTTCATTTCTGGGGTTTTGGGCATTTGGGGAAAGAGGAAGAGAGGATAATGGCGGGAAAGCGTTCGTCGCCGTTTTCTTCTCCGTTACTGAGACCACCACCGGAGTTTCTGAATGTGAAGGAGGAAGGAGAAACGGAGACGCCGTGTTGGAGAAAGGAAGTGGATGAGAACTTGAAGCGTCTCCAATCGCTGCTCTTCGGCGCCGACAAATTCCTGGAGAAATCTGATTTCTCTTCTGCTCAGATCCTTGGGCTTCGTCTTCTAGGTTTCCTCGATTCTCGTTCTGTCACTGACGCCGATCGTGATTTCATTGGTCCCATTCGTCGTGAAGTTGCCTCTAAGATTGATTTAGCTTTGGAAGGCCTCGTTTCAGATTCGGATCGGAAGGCGTTTGAGCTTGCAAATACAGCTCCAGGGGCAATTTTTGGCAGCAAAGGTGGATTTGATGTGGAAAAGATTAAGCAGTCTAAGTACTTTGGTTTTCATGTCAGTCAATCTAACGGAAAGGGTGTTAAAGAGATGGAAGAACGGCATGATACGGATAAGTTGATTCCCAAAGCACCAAAGTCAATGATGCAAGCCAAACTGACATCATTGTATGGAAACAGTATTGGTAAACCAGATAATCAGCGCAAAACTTCAGTGAACAATCAAGACCGTGCCTCTGATGAATGTGTCATTGTTGAGAGAAGTCATGGATTTGGTTTTGGAACAAAGCGACCTCATGCAGAAACCAGTAGCCTTGCAAATGATGGGGAAGTAAAGGAAGATGGAGCTCCTAATGGATTTGTATCCGCCAAAATAAAACTGGAAATGGATGTAAGACAAAAACGAGGATCAACTGAGTCACCAAGTTCATGTCTTTCTCCACAGAGTGACAAAAATGCTTTAGGTAGGGGCTATGGTTCAAGGTCGGGTGGATTAAGACGTGGATACCGTAGTAATTTTGTCCCTCCTGTTAAAACTAATGGGAATAATGTTGGAAACTTGACGTCTCGTATTGGTGGAAAGACTGACGATGCACTGGATGACTCAACCAGAACATGTTTGGAGATGCTCTGTGGTCCTGATGGTGAGCTTCCCGAGAAGTTGAGAAATTTGGAACCTCGTCTTATAGAGCATGTCAGCAACGAGATTATGGATCGAGACCCCAATGTCCGCTGGGATGATATTGCTGGTCTGGAGCATGCTAAAAAGTGTGTAACTGAGATGGTCATTTGGCCATTGTTGCGTCCTGACATTTTCAAAGGTTGTCGTTCACCTGGAAAAGGACTTCTTCTCTTTGGCCCACCAGGAACTGGTAAAACAATGATTGGAAAAGCTATAGCTGGAGAAGCGAAAGCAACCTTTTTCTATATATCAGCCAGTTCATTGACAAGCAAGTGGATTGGCGAAGGTGAAAAGCTAGTGAGGGCCCTTTTTGGAGTTGCGAGTTGCCGCCAGCCTGCAGTAATATTTGTCGATGAAATAGATTCTCTACTATCTCAGCGTAAGTCAGATGGTGAACATGAATCGAGTAGAAGACTCAAGACACAATTCCTGATTGAAATGGAAGGTTTCGACAGTGGCAGCGAGCAAATTCTCCTAATAGGAGCAACAAATAGACCGCAAGAGCTCGATGAAGCAGCAAGAAGACGACTAACCAAGAGACTCTACATTCCTCTTCCTTCATCTGAAGCAAGAGCATGGATAATACAGAATCTCCTAAAGAAAGATGGGTTGTTTACTCTGTCGGATGATGATATGAACATCATATGCAACCTAACGGAAGGGTACTCGGGATCAGATATGAAGAACCTGGTGAAAGATGCAACTATGGGTCCATTAAGAGAAGCTCTCAAACGAGGCATAGATATAACTAACCTGACTAAAGATGACATGCGTCTAGTAACTCTTCAGGACTTTAAAGACGCATTGCAAGAAGTAAGGCCTTCTGTTTCTCAGAACGAACTTGGAATCTATGAAAATTGGAACAATCAGTTTGGTAGTTTAAGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

680

Amino Acids

75.35

Weight (kDa)

6.26

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FIGL1_N PF24347 63 - 132 1.1e-34 FIGL1 N-terminal domain
AAA PF00004 439 - 569 2.7e-39 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 594 - 634 4.7e-08 AAA+ lid domain
Vps4_C PF09336 643 - 676 5.6e-08 Vps4 C terminal oligomerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27120
fragaria_vesca FvH4_6g53320
malus_domestica MD09G1011500.v1.1 MD17G1012000.v1.1
prunus_persica Prupe.3G305500_v2.0.a1
pyrus_communis pycom111g00980 pycom17g00970
rosa_chinensis RchiOBHm_Chr2g0175481
rosa_laevigata RLG00000022331
rosa_multiflora Rmu_sc0003302.1_g000002 Rmu_sc0021955.1_g000001
rosa_roxburghii Rroxscaffold_2G00077280
rosa_rugosa Rorug02G0585100
rosa_samantha Rh2AG664600 Rh2BG675300 Rh2CG638500 Rh2DG689300
rosa_wichuraiana Rw2G054470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1196
AatII GACGTC 1 cut(s) 1037
AccB1I GGYRCC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 1340
AccII CGCG 1 cut(s) 33
AciI CCGC 5 cut(s) 95, 837, 1201, 1480, 1649
AclWI GGATC 5 cut(s) 280, 429, 886, 1191, 1831
AcoI YGGCCR 1 cut(s) 1262
AcsI RAATTY 5 cut(s) 35, 41, 251, 1138, 1620
AcuI CTGAAG 3 cut(s) 666, 1737, 1922
AcyI GRCGYC 4 cut(s) 182, 243, 336, 1034
AdeI CACNNNGTG 1 cut(s) 917
AfaI GTAC 2 cut(s) 515, 1817
AfiI CCNNNNNNNGG 2 cut(s) 1310, 1340
AflIII ACRYGT 1 cut(s) 1085
AgsI TTSAA 5 cut(s) 41, 217, 951, 1288, 1589
AjiI CACGTC 1 cut(s) 971
AjnI CCWGG 5 cut(s) 255, 454, 1303, 1333, 1839
Alw21I GWGCWC 2 cut(s) 820, 1659
Alw26I GTCTC 6 cut(s) 127, 173, 227, 1041, 1182, 1684
AlwI GGATC 5 cut(s) 280, 429, 886, 1191, 1831
AlwNI CAGNNNCTG 2 cut(s) 26, 1340
Ama87I CYCGRG 2 cut(s) 1124, 1819
AoxI GGCC 5 cut(s) 403, 1262, 1327, 1455, 1970
ApaI GGGCCC 1 cut(s) 1459
ApeKI GCWGC 4 cut(s) 232, 471, 1611, 1667
ApoI RAATTY 5 cut(s) 35, 41, 251, 1138, 1620
Asp700I GAANNNNTTC 1 cut(s) 103
AspLEI GCGC 3 cut(s) 33, 245, 675
AspS9I GGNCC 6 cut(s) 356, 1106, 1328, 1455, 1456, 1862
AsuHPI GGTGA 6 cut(s) 882, 1127, 1293, 1451, 1556, 1855
AvaI CYCGRG 2 cut(s) 1124, 1819
AvaII GGWCC 3 cut(s) 356, 1106, 1862
BaeGI GKGCMC 1 cut(s) 1459
BaeI ACNNNNGTAYC 2 cut(s) 967, 1000
BalI TGGCCA 1 cut(s) 1264
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 3 cut(s) 820, 1459, 1659
BbsI GAAGAC 3 cut(s) 293, 1570, 1681
Bbv12I GWGCWC 2 cut(s) 820, 1659
BbvI GCAGC 4 cut(s) 219, 483, 1623, 1679
BccI CCATC 7 cut(s) 556, 788, 806, 1106, 1246, 1535, 1751
BceAI ACGGC 3 cut(s) 97, 169, 587
BciT130I CCWGG 5 cut(s) 257, 456, 1305, 1335, 1841
BciVI GTATCC 2 cut(s) 844, 968
BcoDI GTCTC 6 cut(s) 127, 173, 227, 1041, 1182, 1684
BfaI CTAG 3 cut(s) 305, 1448, 1928
BfmI CTRYAG 2 cut(s) 1365, 1488
BfoI RGCGCY 1 cut(s) 246
BfuI GTATCC 2 cut(s) 844, 968
BisI GCNGC 5 cut(s) 233, 472, 1480, 1612, 1668
BlsI GCNGC 5 cut(s) 234, 473, 1481, 1613, 1669
BmcAI AGTACT 1 cut(s) 515
Bme1390I CCNGG 5 cut(s) 257, 456, 1305, 1335, 1841
Bme18I GGWCC 3 cut(s) 356, 1106, 1862
BmeT110I CYCGRG 2 cut(s) 1124, 1819
BmgBI CACGTC 1 cut(s) 971
BmgT120I GGNCC 6 cut(s) 356, 1106, 1328, 1455, 1456, 1862
BmiI GGNNCC 5 cut(s) 244, 358, 1146, 1457, 1863
BmrFI CCNGG 5 cut(s) 257, 456, 1305, 1335, 1841
BmsI GCATC 4 cut(s) 606, 1051, 1086, 1840
BoxI GACNNNNGTC 1 cut(s) 1923
BpiI GAAGAC 3 cut(s) 293, 1570, 1681
BplI GAGNNNNNCTC 2 cut(s) 1863, 1895
BpmI CTGGAG 4 cut(s) 278, 438, 1244, 1392
BpuEI CTTGAG 1 cut(s) 1553
BsaBI GATNNNNATC 2 cut(s) 420, 832
BsaHI GRCGYC 4 cut(s) 182, 243, 336, 1034
BsaI GGTCTC 2 cut(s) 127, 1182
BsaJI CCNNGG 2 cut(s) 289, 455
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 1728, 1758
Bsc4I CCNNNNNNNGG 2 cut(s) 1310, 1340
Bse1I ACTGG 5 cut(s) 777, 855, 1071, 1345, 1407
Bse3DI GCAATG 1 cut(s) 1955
Bse8I GATNNNNATC 2 cut(s) 420, 832
BseBI CCWGG 5 cut(s) 257, 456, 1305, 1335, 1841
BseDI CCNNGG 2 cut(s) 289, 455
BseGI GGATG 5 cut(s) 211, 865, 1075, 1213, 1783
BseJI GATNNNNATC 2 cut(s) 420, 832
BseLI CCNNNNNNNGG 2 cut(s) 1310, 1340
BseMI GCAATG 1 cut(s) 1955
BseMII CTCAG 7 cut(s) 18, 122, 296, 876, 1239, 1541, 1997
BseNI ACTGG 5 cut(s) 777, 855, 1071, 1345, 1407
BseSI GKGCMC 1 cut(s) 1459
BseXI GCAGC 4 cut(s) 219, 483, 1623, 1679
BseYI CCCAGC 1 cut(s) 1203
Bsh1236I CGCG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 343
BshFI GGCC 5 cut(s) 405, 1264, 1329, 1457, 1972
BshNI GGYRCC 1 cut(s) 242
BsiEI CGRYCG 1 cut(s) 343
BsiHKAI GWGCWC 2 cut(s) 820, 1659
BsiHKCI CYCGRG 2 cut(s) 1124, 1819
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 2 cut(s) 342, 977
BslI CCNNNNNNNGG 2 cut(s) 1310, 1340
BsmAI GTCTC 6 cut(s) 127, 173, 227, 1041, 1182, 1684
BsmBI CGTCTC 3 cut(s) 173, 227, 1041
BsmFI GGGAC 2 cut(s) 342, 977
BsnI GGCC 5 cut(s) 405, 1264, 1329, 1457, 1972
Bso31I GGTCTC 2 cut(s) 127, 1182
BsoBI CYCGRG 2 cut(s) 1124, 1819
Bsp120I GGGCCC 1 cut(s) 1455
Bsp1286I GDGCHC 3 cut(s) 820, 1459, 1659
Bsp143I GATC 6 cut(s) 285, 340, 421, 878, 1183, 1823
BspACI CCGC 5 cut(s) 95, 837, 1201, 1480, 1649
BspANI GGCC 5 cut(s) 405, 1264, 1329, 1457, 1972
BspCNI CTCAG 7 cut(s) 19, 123, 295, 877, 1240, 1540, 1996
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 5 cut(s) 244, 358, 1146, 1457, 1863
BspMAI CTGCAG 1 cut(s) 1492
BspPI GGATC 5 cut(s) 280, 429, 886, 1191, 1831
BspQI GCTCTTC 1 cut(s) 242
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 2 cut(s) 127, 1182
BsrDI GCAATG 1 cut(s) 1955
BsrI ACTGG 5 cut(s) 777, 855, 1071, 1345, 1407
BssECI CCNNGG 2 cut(s) 289, 455
BssMI GATC 6 cut(s) 285, 340, 421, 878, 1183, 1823
BssNI GRCGYC 4 cut(s) 182, 243, 336, 1034
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 5 cut(s) 257, 456, 1305, 1335, 1841
Bst4CI ACNGT 4 cut(s) 650, 701, 980, 1607
Bst6I CTCTTC 5 cut(s) 75, 242, 280, 1710, 1941
BstACI GRCGYC 4 cut(s) 182, 243, 336, 1034
BstC8I GCNNGC 6 cut(s) 441, 621, 1230, 1484, 1488, 1616
BstDEI CTNAG 9 cut(s) 27, 131, 282, 381, 510, 885, 1248, 1527, 1983
BstENI CCTNNNNNAGG 1 cut(s) 1308
BstF5I GGATG 5 cut(s) 211, 865, 1075, 1213, 1783
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 3 cut(s) 33, 245, 675
BstKTI GATC 6 cut(s) 288, 343, 424, 881, 1186, 1826
BstMAI GTCTC 6 cut(s) 127, 173, 227, 1041, 1182, 1684
BstMBI GATC 6 cut(s) 285, 340, 421, 878, 1183, 1823
BstMCI CGRYCG 1 cut(s) 343
BstMWI GCNNNNNNNGC 5 cut(s) 109, 449, 458, 1270, 1376
BstNI CCWGG 5 cut(s) 257, 456, 1305, 1335, 1841
BstNSI RCATGY 4 cut(s) 1089, 1166, 1232, 1924
BstPAI GACNNNNGTC 1 cut(s) 1923
BstSCI CCNGG 5 cut(s) 255, 454, 1303, 1333, 1839
BstSFI CTRYAG 2 cut(s) 1365, 1488
BstSLI GKGCMC 1 cut(s) 1459
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 4 cut(s) 219, 483, 1623, 1679
BstV2I GAAGAC 3 cut(s) 293, 1570, 1681
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuI GTATCC 2 cut(s) 844, 968
BsuRI GGCC 5 cut(s) 405, 1264, 1329, 1457, 1972
BtrI CACGTC 1 cut(s) 971
BtsCI GGATG 5 cut(s) 211, 865, 1075, 1213, 1783
BtsIMutI CAGTG 4 cut(s) 330, 690, 1064, 1612
Cac8I GCNNGC 6 cut(s) 441, 621, 1230, 1484, 1488, 1616
CaiI CAGNNNCTG 2 cut(s) 26, 1340
CfoI GCGC 3 cut(s) 33, 245, 675
Cfr13I GGNCC 6 cut(s) 356, 1106, 1328, 1455, 1456, 1862
CseI GACGC 6 cut(s) 190, 209, 344, 1262, 1913, 1961
CsiI ACCWGGT 1 cut(s) 1839
Csp6I GTAC 2 cut(s) 514, 1816
CviQI GTAC 2 cut(s) 514, 1816
DdeI CTNAG 9 cut(s) 27, 131, 282, 381, 510, 885, 1248, 1527, 1983
DinI GGCGCC 1 cut(s) 244
DpnI GATC 6 cut(s) 287, 342, 423, 880, 1185, 1825
DpnII GATC 6 cut(s) 285, 340, 421, 878, 1183, 1823
DraI TTTAAA 1 cut(s) 1948
DraIII CACNNNGTG 1 cut(s) 917
DrdI GACNNNNNNGTC 1 cut(s) 1196
DseDI GACNNNNNNGTC 1 cut(s) 1196
EaeI YGGCCR 1 cut(s) 1262
Eam1104I CTCTTC 5 cut(s) 75, 242, 280, 1710, 1941
EarI CTCTTC 5 cut(s) 75, 242, 280, 1710, 1941
EciI GGCGGA 1 cut(s) 826
Ecl136II GAGCTC 2 cut(s) 818, 1657
Eco130I CCWWGG 1 cut(s) 289
Eco147I AGGCCT 2 cut(s) 405, 1972
Eco24I GRGCYC 3 cut(s) 820, 1459, 1659
Eco31I GGTCTC 2 cut(s) 127, 1182
Eco47I GGWCC 3 cut(s) 356, 1106, 1862
Eco53kI GAGCTC 2 cut(s) 818, 1657
Eco57I CTGAAG 3 cut(s) 666, 1737, 1922
Eco88I CYCGRG 2 cut(s) 1124, 1819
EcoICRI GAGCTC 2 cut(s) 818, 1657
EcoNI CCTNNNNNAGG 1 cut(s) 1308
EcoO109I RGGNCCY 2 cut(s) 1455, 1456
EcoRII CCWGG 5 cut(s) 255, 454, 1303, 1333, 1839
EcoT14I CCWWGG 1 cut(s) 289
EcoT38I GRGCYC 3 cut(s) 820, 1459, 1659
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 289
Esp3I CGTCTC 3 cut(s) 173, 227, 1041
FalI AAGNNNNNCTT 2 cut(s) 1302, 1334
FaqI GGGAC 2 cut(s) 342, 977
FauI CCCGC 1 cut(s) 88
FauNDI CATATG 1 cut(s) 1796
Fnu4HI GCNGC 5 cut(s) 233, 472, 1480, 1612, 1668
FokI GGATG 5 cut(s) 218, 872, 1082, 1220, 1790
FriOI GRGCYC 3 cut(s) 820, 1459, 1659
Fsp4HI GCNGC 5 cut(s) 233, 472, 1480, 1612, 1668
FspBI CTAG 3 cut(s) 305, 1448, 1928
GlaI GCGC 3 cut(s) 32, 244, 674
GluI GCNGC 5 cut(s) 233, 472, 1480, 1612, 1668
GsaI CCCAGC 1 cut(s) 1207
GsuI CTGGAG 4 cut(s) 278, 438, 1244, 1392
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 5 cut(s) 405, 1264, 1329, 1457, 1972
HapII CCGG 1 cut(s) 143
HgaI GACGC 6 cut(s) 190, 209, 344, 1262, 1913, 1961
HhaI GCGC 3 cut(s) 33, 245, 675
Hin1I GRCGYC 4 cut(s) 182, 243, 336, 1034
Hin6I GCGC 3 cut(s) 31, 243, 673
HinP1I GCGC 3 cut(s) 31, 243, 673
HpaII CCGG 1 cut(s) 143
HphI GGTGA 6 cut(s) 882, 1127, 1293, 1451, 1556, 1855
Hpy166II GTNNAC 5 cut(s) 659, 688, 1301, 1547, 1767
Hpy8I GTNNAC 5 cut(s) 659, 688, 1301, 1547, 1767
Hpy99I CGWCG 2 cut(s) 112, 369
HpyAV CCTTC 9 cut(s) 154, 161, 395, 421, 1430, 1589, 1719, 1805, 1983
HpyCH4III ACNGT 4 cut(s) 650, 701, 980, 1607
HpyCH4IV ACGT 2 cut(s) 970, 1034
HpyCH4V TGCA 9 cut(s) 443, 619, 770, 788, 1064, 1490, 1800, 1853, 1960
HpyF10VI GCNNNNNNNGC 5 cut(s) 109, 449, 458, 1270, 1376
HpyF3I CTNAG 9 cut(s) 27, 131, 282, 381, 510, 885, 1248, 1527, 1983
HpySE526I ACGT 2 cut(s) 970, 1034
Hsp92I GRCGYC 4 cut(s) 182, 243, 336, 1034
HspAI GCGC 3 cut(s) 31, 243, 673
KasI GGCGCC 1 cut(s) 242
Kzo9I GATC 6 cut(s) 285, 340, 421, 878, 1183, 1823
LguI GCTCTTC 1 cut(s) 242
LmnI GCTCC 5 cut(s) 457, 815, 823, 1225, 1634
Lsp1109I GCAGC 4 cut(s) 219, 483, 1623, 1679
LweI GCATC 4 cut(s) 606, 1051, 1086, 1840
MabI ACCWGGT 1 cut(s) 1839
MaeI CTAG 3 cut(s) 305, 1448, 1928
MaeII ACGT 2 cut(s) 970, 1034
MaeIII GTNAC 6 cut(s) 126, 328, 888, 917, 1243, 1930
MalI GATC 6 cut(s) 287, 342, 423, 880, 1185, 1825
MboI GATC 6 cut(s) 285, 340, 421, 878, 1183, 1823
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 3 cut(s) 820, 1459, 1659
MlsI TGGCCA 1 cut(s) 1264
MluCI AATT 9 cut(s) 35, 41, 251, 462, 985, 1138, 1577, 1620, 2008
MluNI TGGCCA 1 cut(s) 1264
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 4 cut(s) 896, 1067, 1560, 1686
MmeI TCCRAC 3 cut(s) 170, 1003, 1755
Mox20I TGGCCA 1 cut(s) 1264
MroXI GAANNNNTTC 1 cut(s) 103
MscI TGGCCA 1 cut(s) 1264
MseI TTAA 7 cut(s) 501, 555, 965, 1002, 1868, 1947, 2033
Msp20I TGGCCA 1 cut(s) 1264
MspA1I CMGCKG 1 cut(s) 1203
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 5 cut(s) 257, 456, 1305, 1335, 1841
MvaI CCWGG 5 cut(s) 257, 456, 1305, 1335, 1841
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 5 cut(s) 109, 449, 458, 1270, 1376
NarI GGCGCC 1 cut(s) 243
NdeI CATATG 1 cut(s) 1796
NdeII GATC 6 cut(s) 285, 340, 421, 878, 1183, 1823
NlaIV GGNNCC 5 cut(s) 244, 358, 1146, 1457, 1863
NmuCI GTSAC 3 cut(s) 328, 888, 917
NspI RCATGY 4 cut(s) 1089, 1166, 1232, 1924
PaeI GCATGC 1 cut(s) 1232
PceI AGGCCT 2 cut(s) 405, 1972
PciI ACATGT 1 cut(s) 1085
PciSI GCTCTTC 1 cut(s) 242
PcsI WCGNNNNNNNCGW 2 cut(s) 182, 976
PdmI GAANNNNTTC 1 cut(s) 103
PfeI GAWTC 8 cut(s) 23, 317, 416, 592, 1514, 1553, 1741, 1998
PflMI CCANNNNNTGG 1 cut(s) 1340
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 5 cut(s) 234, 473, 1481, 1613, 1669
Ple19I CGATCG 1 cut(s) 343
PleI GAGTC 4 cut(s) 895, 1067, 1560, 1686
PluTI GGCGCC 1 cut(s) 246
PpsI GAGTC 4 cut(s) 895, 1067, 1560, 1686
PscI ACATGT 1 cut(s) 1085
PshAI GACNNNNGTC 1 cut(s) 1923
Psp124BI GAGCTC 2 cut(s) 820, 1659
Psp6I CCWGG 5 cut(s) 255, 454, 1303, 1333, 1839
PspFI CCCAGC 1 cut(s) 1203
PspGI CCWGG 5 cut(s) 255, 454, 1303, 1333, 1839
PspN4I GGNNCC 5 cut(s) 244, 358, 1146, 1457, 1863
PspOMI GGGCCC 1 cut(s) 1455
PspPI GGNCC 6 cut(s) 356, 1106, 1328, 1455, 1456, 1862
PstI CTGCAG 1 cut(s) 1492
PstNI CAGNNNCTG 2 cut(s) 26, 1340
PsuI RGATCY 1 cut(s) 285
PvuI CGATCG 1 cut(s) 343
RsaI GTAC 2 cut(s) 515, 1817
RsaNI GTAC 2 cut(s) 514, 1816
SacI GAGCTC 2 cut(s) 820, 1659
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 7 cut(s) 501, 555, 965, 1002, 1868, 1947, 2033
SatI GCNGC 5 cut(s) 233, 472, 1480, 1612, 1668
Sau3AI GATC 6 cut(s) 285, 340, 421, 878, 1183, 1823
Sau96I GGNCC 6 cut(s) 356, 1106, 1328, 1455, 1456, 1862
ScaI AGTACT 1 cut(s) 515
SchI GAGTC 4 cut(s) 896, 1067, 1560, 1686
ScrFI CCNGG 5 cut(s) 257, 456, 1305, 1335, 1841
SduI GDGCHC 3 cut(s) 820, 1459, 1659
SexAI ACCWGGT 1 cut(s) 1839
SfaNI GCATC 4 cut(s) 606, 1051, 1086, 1840
SfcI CTRYAG 2 cut(s) 1365, 1488
SfoI GGCGCC 1 cut(s) 244
SinI GGWCC 3 cut(s) 356, 1106, 1862
SmlI CTYRAG 1 cut(s) 1568
SmoI CTYRAG 1 cut(s) 1568
SphI GCATGC 1 cut(s) 1232
Sse9I AATT 9 cut(s) 35, 41, 251, 462, 985, 1138, 1577, 1620, 2008
SseBI AGGCCT 2 cut(s) 405, 1972
SsiI CCGC 5 cut(s) 95, 837, 1201, 1480, 1649
SspDI GGCGCC 1 cut(s) 242
SspI AATATT 1 cut(s) 1497
SspMI CTAG 3 cut(s) 305, 1448, 1928
SstI GAGCTC 2 cut(s) 820, 1659
StuI AGGCCT 2 cut(s) 405, 1972
StyD4I CCNGG 5 cut(s) 255, 454, 1303, 1333, 1839
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 4 cut(s) 650, 701, 980, 1607
TaiI ACGT 2 cut(s) 973, 1037
TaqI TCGA 6 cut(s) 315, 1186, 1503, 1556, 1602, 1659
TasI AATT 9 cut(s) 35, 41, 251, 462, 985, 1138, 1577, 1620, 2008
TatI WGTACW 1 cut(s) 513
TauI GCSGC 1 cut(s) 1482
TfiI GAWTC 8 cut(s) 23, 317, 416, 592, 1514, 1553, 1741, 1998
Tru1I TTAA 7 cut(s) 501, 555, 965, 1002, 1868, 1947, 2033
Tru9I TTAA 7 cut(s) 501, 555, 965, 1002, 1868, 1947, 2033
TscAI CASTG 4 cut(s) 337, 690, 1071, 1612
TseFI GTSAC 3 cut(s) 328, 888, 917
TseI GCWGC 4 cut(s) 232, 471, 1611, 1667
Tsp45I GTSAC 3 cut(s) 328, 888, 917
TspGWI ACGGA 5 cut(s) 114, 191, 558, 596, 1823
TspRI CASTG 4 cut(s) 337, 690, 1071, 1612
Van91I CCANNNNNTGG 1 cut(s) 1340
VpaK11BI GGWCC 3 cut(s) 356, 1106, 1862
XagI CCTNNNNNAGG 1 cut(s) 1308
XapI RAATTY 5 cut(s) 35, 41, 251, 1138, 1620
XceI RCATGY 4 cut(s) 1089, 1166, 1232, 1924
XcmI CCANNNNNNNNNTGG 2 cut(s) 847, 1087
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 3 cut(s) 305, 1448, 1928
ZraI GACGTC 1 cut(s) 1035
ZrmI AGTACT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.