Rh2BG675300

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012914
Physical Location & Seq
Forward (+)
88673594 .. 88677547
3954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG675300.1

Sequence Viewer

Length: 2004 bp
ATGGCGGGAAAGGAGGAACCGAACTCCGGCGAAGAGGTCTGCTGGAGAAAGCAAGTCGGTGATAACCTAAACCGCCTTCAGTCCCTTCTCTTCGGAGCCGAACTCGCCGCCGAGAGAAACGACTTCTCCTCCGCTCAGATATTCTCTCTTCGTCTCCTCGGCTTTCTCGACTCACAGTCTCACTCTCAGCTCGACCGCGCTTTCGTCAGCCCTATTCGCCACGAAGCCGTCTCCAAGCTCGGAGAGGCCCGCCGTGCCCTCACTTCTGATTCCGATCGCAAAGCTTTCGAGCAAGCGAAAAAAGATCCTGGTTTTGTTTTCAGCACAAAGGGAGATATTGACATTGGGAGGATTAAACAGTCAAAGTACTTTCAGGCTCTTCTTCAGCAGCCTAACAATGGAAAGGTTGTGAATGATTTGGGAGATCAACTGGAGAGGCGGGACGAATTGGCTAGCAAGTTATCAAAAGCTATGACACAAACTAAGTTGACATCATTGTACAAAAACAACATTGGGACGGCAAGTAAGGACACATCCCGTAGTTCTTGGGCTCCTAAAAGTAACAGCTCTGAGGACTGCACTATTGTGGAAAAGCGTCACTCTCATCACAACCGTAACAGCAGTCATACTACCTCATCTTTTCAAAAAGTTGAAGAGGAAGAAAGAGCTCATGGGTATCCCTTAGGCCCTAAACGTGTACACAGGGAATTTAATAGCCCCATTATTGATAATATGAAGTCCCCATCAGCCAATGAAGATGCTAAAGCCGATGTTTCTGGCAATGGATTTGTAACTGCCAAAGCCAAATTGGAAATGGATGTAAGGCAAAGGCGAGGGTTAGCTGCATCATCAAATGCTTCTGTCTCTCCTCAAAGTGATAACAGTGTTGCTAATAGGGGTTTTAGCACGAGATCATATGGTGTTTCACGTCGAGGTGTCCGCGGTAATTTTATTCCTCCCGTCAGATCTAATGGGGGCAATGTTGGGAATATGACTTCAAAAATTGGTGGAAAGTCGGATGATGCATTAGATGACTCAACTAGGAGCTGTATGGAAATGCTCTGCGGTCCTGATGGGGAGCTCCCAGAAAAATTAAGGAACTTGGAACCTCGTCTTATTGAACATGTCAGTAATGAGATTATGGACAAGGATCCAAATGTTCGATGGAATGATATTGCTGGCTTGGATCATGCTAAAAAGTGTGTGACGGAGATGGTTATATGGCCCCTGTTACGTCCCGACATTTTCAAAGGATGTCGTTCTCCTGGAAAGGGTCTTCTTCTCTTCGGTCCACCAGGAACAGGCAAAACAATGATTGGGAAAGCCATAGCTGGAGAGGCAAAAGCAACGTTCTTCTACATCTCTGCCAGTTCATTGACAAGCAAATGGATTGGTGAGGGTGAAAAGTTAGTTCGGGCCCTTTTTGGAGTAGCCAGTTGTCGGCAGCCAGCTGTAATTTTTGTTGACGAAATCGATTCACTTCTCTCACAGCGTAAGTCAGAAGGTGAACATGAATCAAGTAGGCGACTCAAAACACAGTTTCTTATTGAAATGGAAGGCTTTGACAGTGGCAGTGAGCAAATTCTTCTAATAGGGGCAACAAATCGACCCCAAGAGCTTGATGAAGCAGCACGTAGGCGACTTACTAAGAGACTTTACATTCCGCTGCCTGCATCAGAAGCGAGAGCCTGGATAGTGGAGAATCTCCTGGAGAAGGATGGTCTATTCAAACTTTCAAGGGAAGATATTGATAACATATGCAAATTAACAGAAGGGTACTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCCTCTATGGGTCCTCTAAGAGAAGCTCTGAGACAAGGCATAGAAATAACAAATCTTAAGAAGGAGGATATGCGCCCGGTAACTTTTCAGGATTTTGAGAGTGCATTACATGAGGTGAGGCCCTCTGTTTCCTTGAATGAGCTTGGTACCTATGATGATTGGAACAAGCAATTTGGAAGTTTGTCCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

667

Amino Acids

73.96

Weight (kDa)

8.42

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FIGL1_N PF24347 12 - 86 6.2e-35 FIGL1 N-terminal domain
AAA PF00004 426 - 556 2.5e-39 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 581 - 623 4.2e-10 AAA+ lid domain
Vps4_C PF09336 629 - 663 3.4e-07 Vps4 C terminal oligomerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27120
fragaria_vesca FvH4_6g53320
malus_domestica MD09G1011500.v1.1 MD17G1012000.v1.1
prunus_persica Prupe.3G305500_v2.0.a1
pyrus_communis pycom111g00980 pycom17g00970
rosa_chinensis RchiOBHm_Chr2g0175481
rosa_laevigata RLG00000022331
rosa_multiflora Rmu_sc0003302.1_g000002 Rmu_sc0021955.1_g000001
rosa_roxburghii Rroxscaffold_2G00077280
rosa_rugosa Rorug02G0585100
rosa_samantha Rh2AG664600 Rh2BG675300 Rh2CG638500 Rh2DG689300
rosa_wichuraiana Rw2G054470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1958
AccB1I GGYRCC 1 cut(s) 1958
AccBSI CCGCTC 1 cut(s) 134
AccII CGCG 2 cut(s) 198, 942
AclI AACGTT 1 cut(s) 1349
AclWI GGATC 5 cut(s) 299, 1145, 1158, 1194, 1792
AcsI RAATTY 2 cut(s) 707, 1581
AcuI CTGAAG 2 cut(s) 62, 368
AfaI GTAC 5 cut(s) 368, 500, 699, 1778, 1960
AfiI CCNNNNNNNGG 6 cut(s) 26, 398, 1271, 1301, 1440, 1714
AflII CTTAAG 1 cut(s) 1868
AflIII ACRYGT 2 cut(s) 694, 1123
AgsI TTSAA 9 cut(s) 644, 653, 999, 1121, 1249, 1550, 1729, 1737, 1948
AhdI GACNNNNNGTC 1 cut(s) 175
AjiI CACGTC 1 cut(s) 929
AjnI CCWGG 5 cut(s) 307, 1264, 1294, 1688, 1707
AleI CACNNNNGTG 1 cut(s) 584
Alw21I GWGCWC 2 cut(s) 670, 1083
Alw26I GTCTC 6 cut(s) 158, 183, 235, 868, 1645, 1837
AlwI GGATC 5 cut(s) 299, 1145, 1158, 1194, 1792
AoxI GGCC 5 cut(s) 246, 685, 1223, 1416, 1931
ApaI GGGCCC 1 cut(s) 1420
ApeKI GCWGC 5 cut(s) 388, 842, 1444, 1628, 1666
ApoI RAATTY 2 cut(s) 707, 1581
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
Asp718I GGTACC 1 cut(s) 1958
AspLEI GCGC 2 cut(s) 200, 1887
AspS9I GGNCC 9 cut(s) 247, 686, 1067, 1224, 1289, 1416, 1417, 1823, 1932
AsuC2I CCSGG 1 cut(s) 1889
AsuHPI GGTGA 5 cut(s) 71, 1406, 1412, 1517, 1939
AsuNHI GCTAGC 1 cut(s) 452
AvaII GGWCC 3 cut(s) 1067, 1289, 1823
AxyI CCTNAGG 1 cut(s) 682
BaeGI GKGCMC 2 cut(s) 259, 1420
BamHI GGATCC 1 cut(s) 1150
BanI GGYRCC 1 cut(s) 1958
BanII GRGCYC 4 cut(s) 553, 670, 1083, 1420
BauI CACGAG 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 1268
Bbv12I GWGCWC 2 cut(s) 670, 1083
BbvI GCAGC 5 cut(s) 400, 829, 1456, 1640, 1653
BccI CCATC 5 cut(s) 751, 1067, 1158, 1207, 1712
BceAI ACGGC 3 cut(s) 212, 237, 534
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 5 cut(s) 309, 1266, 1296, 1690, 1709
BciVI GTATCC 1 cut(s) 687
BcnI CCSGG 1 cut(s) 1889
BcoDI GTCTC 6 cut(s) 158, 183, 235, 868, 1645, 1837
BfaI CTAG 2 cut(s) 453, 1041
BfrI CTTAAG 1 cut(s) 1868
BfuI GTATCC 1 cut(s) 687
BglII AGATCT 1 cut(s) 965
BisI GCNGC 6 cut(s) 108, 389, 843, 1445, 1629, 1667
BlsI GCNGC 6 cut(s) 109, 390, 844, 1446, 1630, 1668
BmcAI AGTACT 1 cut(s) 368
Bme1390I CCNGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
Bme18I GGWCC 3 cut(s) 1067, 1289, 1823
BmeRI GACNNNNNGTC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 929
BmgT120I GGNCC 9 cut(s) 247, 686, 1067, 1224, 1289, 1416, 1417, 1823, 1932
BmiI GGNNCC 9 cut(s) 18, 97, 552, 1107, 1152, 1226, 1418, 1824, 1960
BmrFI CCNGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
BmsI GCATC 5 cut(s) 748, 854, 1012, 1682, 1801
BmtI GCTAGC 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 1268
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpmI CTGGAG 4 cut(s) 64, 452, 1353, 1730
BpuMI CCSGG 1 cut(s) 1889
Bsa29I ATCGAT 1 cut(s) 1473
BsaAI YACGTR 1 cut(s) 1634
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 157, 940
BsaXI ACNNNNNCTCC 4 cut(s) 110, 113, 140, 143
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 398, 1271, 1301, 1440, 1714
Bse1I ACTGG 3 cut(s) 435, 1368, 1434
Bse21I CCTNAGG 1 cut(s) 682
Bse3DI GCAATG 2 cut(s) 787, 985
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 5 cut(s) 309, 1266, 1296, 1690, 1709
BseCI ATCGAT 1 cut(s) 1473
BseDI CCNNGG 2 cut(s) 157, 940
BseGI GGATG 6 cut(s) 533, 823, 1024, 1259, 1723, 1816
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 6 cut(s) 26, 398, 1271, 1301, 1440, 1714
BseMI GCAATG 2 cut(s) 787, 985
BseMII CTCAG 5 cut(s) 149, 200, 561, 1794, 1832
BseNI ACTGG 3 cut(s) 435, 1368, 1434
BseRI GAGGAG 3 cut(s) 118, 146, 858
BseSI GKGCMC 2 cut(s) 259, 1420
BseXI GCAGC 5 cut(s) 400, 829, 1456, 1640, 1653
BsgI GTGCAG 1 cut(s) 562
Bsh1236I CGCG 2 cut(s) 198, 942
Bsh1285I CGRYCG 2 cut(s) 196, 277
BshFI GGCC 5 cut(s) 248, 687, 1225, 1418, 1933
BshNI GGYRCC 1 cut(s) 1958
BshVI ATCGAT 1 cut(s) 1473
BsiEI CGRYCG 2 cut(s) 196, 277
BsiHKAI GWGCWC 2 cut(s) 670, 1083
BsiSI CCGG 2 cut(s) 27, 1889
BslFI GGGAC 6 cut(s) 67, 455, 529, 724, 1221, 1981
BslI CCNNNNNNNGG 6 cut(s) 26, 398, 1271, 1301, 1440, 1714
BsmAI GTCTC 6 cut(s) 158, 183, 235, 868, 1645, 1837
BsmBI CGTCTC 2 cut(s) 158, 235
BsmFI GGGAC 6 cut(s) 67, 455, 529, 724, 1221, 1981
BsnI GGCC 5 cut(s) 248, 687, 1225, 1418, 1933
Bsp120I GGGCCC 1 cut(s) 1416
Bsp1286I GDGCHC 5 cut(s) 259, 553, 670, 1083, 1420
Bsp1407I TGTACA 2 cut(s) 498, 697
Bsp143I GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
BspANI GGCC 5 cut(s) 248, 687, 1225, 1418, 1933
BspCNI CTCAG 5 cut(s) 148, 199, 562, 1793, 1833
BspDI ATCGAT 1 cut(s) 1473
BspFNI CGCG 2 cut(s) 198, 942
BspLI GGNNCC 9 cut(s) 18, 97, 552, 1107, 1152, 1226, 1418, 1824, 1960
BspOI GCTAGC 1 cut(s) 456
BspPI GGATC 5 cut(s) 299, 1145, 1158, 1194, 1792
BspQI GCTCTTC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 1958
BspTI CTTAAG 1 cut(s) 1868
BsrBI CCGCTC 1 cut(s) 134
BsrDI GCAATG 2 cut(s) 787, 985
BsrGI TGTACA 2 cut(s) 498, 697
BsrI ACTGG 3 cut(s) 435, 1368, 1434
BssECI CCNNGG 2 cut(s) 157, 940
BssMI GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
BssSI CACGAG 1 cut(s) 907
Bst2BI CACGAG 1 cut(s) 907
Bst2UI CCWGG 5 cut(s) 309, 1266, 1296, 1690, 1709
Bst4CI ACNGT 6 cut(s) 177, 360, 614, 884, 1539, 1568
Bst6I CTCTTC 6 cut(s) 27, 95, 153, 384, 648, 1289
BstAFI CTTAAG 1 cut(s) 1868
BstAUI TGTACA 2 cut(s) 498, 697
BstBAI YACGTR 1 cut(s) 1634
BstC8I GCNNGC 6 cut(s) 250, 294, 454, 1180, 1449, 1671
BstDSI CCRYGG 1 cut(s) 940
BstENI CCTNNNNNAGG 1 cut(s) 1712
BstF5I GGATG 6 cut(s) 533, 823, 1024, 1259, 1723, 1816
BstFNI CGCG 2 cut(s) 198, 942
BstHHI GCGC 2 cut(s) 200, 1887
BstKTI GATC 8 cut(s) 277, 307, 427, 914, 968, 1153, 1189, 1787
BstMAI GTCTC 6 cut(s) 158, 183, 235, 868, 1645, 1837
BstMBI GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
BstMCI CGRYCG 2 cut(s) 196, 277
BstMWI GCNNNNNNNGC 5 cut(s) 104, 216, 254, 1337, 1679
BstNI CCWGG 5 cut(s) 309, 1266, 1296, 1690, 1709
BstNSI RCATGY 1 cut(s) 1127
BstSCI CCNGG 6 cut(s) 307, 1264, 1294, 1688, 1707, 1887
BstSLI GKGCMC 2 cut(s) 259, 1420
BstUI CGCG 2 cut(s) 198, 942
BstV1I GCAGC 5 cut(s) 400, 829, 1456, 1640, 1653
BstV2I GAAGAC 1 cut(s) 1268
BstX2I RGATCY 3 cut(s) 304, 965, 1150
BstYI RGATCY 3 cut(s) 304, 965, 1150
Bsu15I ATCGAT 1 cut(s) 1473
Bsu36I CCTNAGG 1 cut(s) 682
BsuI GTATCC 1 cut(s) 687
BsuRI GGCC 5 cut(s) 248, 687, 1225, 1418, 1933
BsuTUI ATCGAT 1 cut(s) 1473
BtgI CCRYGG 1 cut(s) 940
BtrI CACGTC 1 cut(s) 929
BtsCI GGATG 6 cut(s) 533, 823, 1024, 1259, 1723, 1816
BtsI GCAGTG 1 cut(s) 1579
BtsIMutI CAGTG 3 cut(s) 889, 1573, 1579
Cac8I GCNNGC 6 cut(s) 250, 294, 454, 1180, 1449, 1671
CfoI GCGC 2 cut(s) 200, 1887
Cfr13I GGNCC 9 cut(s) 247, 686, 1067, 1224, 1289, 1416, 1417, 1823, 1932
Cfr42I CCGCGG 1 cut(s) 943
ClaI ATCGAT 1 cut(s) 1473
CseI GACGC 1 cut(s) 584
Csp6I GTAC 5 cut(s) 367, 499, 698, 1777, 1959
CviAII CATG 6 cut(s) 671, 1124, 1190, 1511, 1792, 1922
CviQI GTAC 5 cut(s) 367, 499, 698, 1777, 1959
DpnI GATC 8 cut(s) 276, 306, 426, 913, 967, 1152, 1188, 1786
DpnII GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
DriI GACNNNNNGTC 1 cut(s) 175
Eam1104I CTCTTC 6 cut(s) 27, 95, 153, 384, 648, 1289
Eam1105I GACNNNNNGTC 1 cut(s) 175
EarI CTCTTC 6 cut(s) 27, 95, 153, 384, 648, 1289
Ecl136II GAGCTC 2 cut(s) 668, 1081
Eco24I GRGCYC 4 cut(s) 553, 670, 1083, 1420
Eco47I GGWCC 3 cut(s) 1067, 1289, 1823
Eco53kI GAGCTC 2 cut(s) 668, 1081
Eco57I CTGAAG 2 cut(s) 62, 368
Eco81I CCTNAGG 1 cut(s) 682
EcoICRI GAGCTC 2 cut(s) 668, 1081
EcoNI CCTNNNNNAGG 1 cut(s) 1712
EcoO109I RGGNCCY 4 cut(s) 686, 1417, 1823, 1932
EcoRII CCWGG 5 cut(s) 307, 1264, 1294, 1688, 1707
EcoT22I ATGCAT 1 cut(s) 1027
EcoT38I GRGCYC 4 cut(s) 553, 670, 1083, 1420
Esp3I CGTCTC 2 cut(s) 158, 235
FaeI CATG 6 cut(s) 674, 1127, 1193, 1514, 1795, 1925
FaqI GGGAC 6 cut(s) 67, 455, 529, 724, 1221, 1981
FatI CATG 6 cut(s) 670, 1123, 1189, 1510, 1791, 1921
FauI CCCGC 2 cut(s) 257, 432
FauNDI CATATG 2 cut(s) 916, 1757
Fnu4HI GCNGC 6 cut(s) 108, 389, 843, 1445, 1629, 1667
FokI GGATG 6 cut(s) 520, 830, 1031, 1266, 1730, 1823
FriOI GRGCYC 4 cut(s) 553, 670, 1083, 1420
Fsp4HI GCNGC 6 cut(s) 108, 389, 843, 1445, 1629, 1667
FspBI CTAG 2 cut(s) 453, 1041
GlaI GCGC 2 cut(s) 199, 1886
GluI GCNGC 6 cut(s) 108, 389, 843, 1445, 1629, 1667
GsuI CTGGAG 4 cut(s) 64, 452, 1353, 1730
HaeIII GGCC 5 cut(s) 248, 687, 1225, 1418, 1933
HapII CCGG 2 cut(s) 27, 1889
HgaI GACGC 1 cut(s) 584
HhaI GCGC 2 cut(s) 200, 1887
Hin1II CATG 6 cut(s) 674, 1127, 1193, 1514, 1795, 1925
Hin6I GCGC 2 cut(s) 198, 1885
HinP1I GCGC 2 cut(s) 198, 1885
HincII GTYRAC 2 cut(s) 489, 1465
HindII GTYRAC 2 cut(s) 489, 1465
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 7 cut(s) 170, 269, 1034, 1475, 1514, 1527, 1702
HpaII CCGG 2 cut(s) 27, 1889
HphI GGTGA 5 cut(s) 71, 1406, 1412, 1517, 1939
Hpy166II GTNNAC 6 cut(s) 489, 698, 700, 1292, 1465, 1508
Hpy188III TCNNGA 5 cut(s) 167, 1070, 1238, 1782, 1901
Hpy8I GTNNAC 6 cut(s) 489, 698, 700, 1292, 1465, 1508
Hpy99I CGWCG 1 cut(s) 933
HpyAV CCTTC 8 cut(s) 86, 95, 1496, 1550, 1708, 1766, 1801, 1867
HpyCH4III ACNGT 6 cut(s) 177, 360, 614, 884, 1539, 1568
HpyCH4IV ACGT 5 cut(s) 694, 928, 1234, 1349, 1633
HpyCH4V TGCA 6 cut(s) 579, 845, 1025, 1673, 1761, 1916
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 216, 254, 1337, 1679
HpySE526I ACGT 5 cut(s) 694, 928, 1234, 1349, 1633
Hsp92II CATG 6 cut(s) 674, 1127, 1193, 1514, 1795, 1925
HspAI GCGC 2 cut(s) 198, 1885
KpnI GGTACC 1 cut(s) 1962
KspI CCGCGG 1 cut(s) 943
Kzo9I GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 5 cut(s) 95, 556, 1044, 1078, 1086
Lsp1109I GCAGC 5 cut(s) 400, 829, 1456, 1640, 1653
LweI GCATC 5 cut(s) 748, 854, 1012, 1682, 1801
MaeI CTAG 2 cut(s) 453, 1041
MaeII ACGT 5 cut(s) 694, 928, 1234, 1349, 1633
MaeIII GTNAC 7 cut(s) 560, 596, 614, 790, 1204, 1230, 1891
MalI GATC 8 cut(s) 276, 306, 426, 913, 967, 1152, 1188, 1786
MbiI CCGCTC 1 cut(s) 134
MboI GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
MflI RGATCY 3 cut(s) 304, 965, 1150
MhlI GDGCHC 5 cut(s) 259, 553, 670, 1083, 1420
MlyI GAGTC 3 cut(s) 164, 1028, 1521
MmeI TCCRAC 1 cut(s) 996
Mph1103I ATGCAT 1 cut(s) 1027
MseI TTAA 5 cut(s) 354, 711, 1094, 1766, 1869
MslI CAYNNNNRTG 1 cut(s) 584
MspA1I CMGCKG 3 cut(s) 942, 1451, 1666
MspCI CTTAAG 1 cut(s) 1868
MspI CCGG 2 cut(s) 27, 1889
MspR9I CCNGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
MvaI CCWGG 5 cut(s) 309, 1266, 1296, 1690, 1709
MvnI CGCG 2 cut(s) 198, 942
MwoI GCNNNNNNNGC 5 cut(s) 104, 216, 254, 1337, 1679
NciI CCSGG 1 cut(s) 1889
NdeI CATATG 2 cut(s) 916, 1757
NdeII GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 6 cut(s) 674, 1127, 1193, 1514, 1795, 1925
NlaIV GGNNCC 9 cut(s) 18, 97, 552, 1107, 1152, 1226, 1418, 1824, 1960
NmeAIII GCCGAG 2 cut(s) 136, 138
NmuCI GTSAC 2 cut(s) 596, 1204
NsiI ATGCAT 1 cut(s) 1027
NspI RCATGY 1 cut(s) 1127
OliI CACNNNNGTG 1 cut(s) 584
PciI ACATGT 1 cut(s) 1123
PciSI GCTCTTC 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 4 cut(s) 269, 1475, 1514, 1702
PfoI TCCNGGA 2 cut(s) 1264, 1707
PkrI GCNGC 6 cut(s) 109, 390, 844, 1446, 1630, 1668
Ple19I CGATCG 1 cut(s) 277
PleI GAGTC 3 cut(s) 164, 1028, 1521
PpsI GAGTC 3 cut(s) 164, 1028, 1521
Ppu21I YACGTR 1 cut(s) 1634
PpuMI RGGWCCY 1 cut(s) 1823
PscI ACATGT 1 cut(s) 1123
Psp124BI GAGCTC 2 cut(s) 670, 1083
Psp1406I AACGTT 1 cut(s) 1349
Psp5II RGGWCCY 1 cut(s) 1823
Psp6I CCWGG 5 cut(s) 307, 1264, 1294, 1688, 1707
PspGI CCWGG 5 cut(s) 307, 1264, 1294, 1688, 1707
PspN4I GGNNCC 9 cut(s) 18, 97, 552, 1107, 1152, 1226, 1418, 1824, 1960
PspOMI GGGCCC 1 cut(s) 1416
PspPI GGNCC 9 cut(s) 247, 686, 1067, 1224, 1289, 1416, 1417, 1823, 1932
PspPPI RGGWCCY 1 cut(s) 1823
PsuI RGATCY 3 cut(s) 304, 965, 1150
PvuI CGATCG 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 1451
RsaI GTAC 5 cut(s) 368, 500, 699, 1778, 1960
RsaNI GTAC 5 cut(s) 367, 499, 698, 1777, 1959
RseI CAYNNNNRTG 1 cut(s) 584
SacI GAGCTC 2 cut(s) 670, 1083
SacII CCGCGG 1 cut(s) 943
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 5 cut(s) 354, 711, 1094, 1766, 1869
SatI GCNGC 6 cut(s) 108, 389, 843, 1445, 1629, 1667
Sau3AI GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
Sau96I GGNCC 9 cut(s) 247, 686, 1067, 1224, 1289, 1416, 1417, 1823, 1932
ScaI AGTACT 1 cut(s) 368
SchI GAGTC 3 cut(s) 164, 1028, 1521
ScrFI CCNGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
SduI GDGCHC 5 cut(s) 259, 553, 670, 1083, 1420
SfaNI GCATC 5 cut(s) 748, 854, 1012, 1682, 1801
Sfr303I CCGCGG 1 cut(s) 943
SgrBI CCGCGG 1 cut(s) 943
SinI GGWCC 3 cut(s) 1067, 1289, 1823
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 1868
SmoI CTYRAG 1 cut(s) 1868
SspMI CTAG 2 cut(s) 453, 1041
SstI GAGCTC 2 cut(s) 670, 1083
StyD4I CCNGG 6 cut(s) 307, 1264, 1294, 1688, 1707, 1887
TaaI ACNGT 6 cut(s) 177, 360, 614, 884, 1539, 1568
TaiI ACGT 5 cut(s) 697, 931, 1237, 1352, 1636
TaqI TCGA 7 cut(s) 168, 192, 288, 931, 1162, 1473, 1606
TaqII GACCGA 1 cut(s) 1277
TatI WGTACW 3 cut(s) 366, 498, 697
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 4 cut(s) 269, 1475, 1514, 1702
Tru1I TTAA 5 cut(s) 354, 711, 1094, 1766, 1869
Tru9I TTAA 5 cut(s) 354, 711, 1094, 1766, 1869
TscAI CASTG 3 cut(s) 889, 1573, 1579
TseFI GTSAC 2 cut(s) 596, 1204
TseI GCWGC 5 cut(s) 388, 842, 1444, 1628, 1666
Tsp45I GTSAC 2 cut(s) 596, 1204
TspDTI ATGAA 6 cut(s) 749, 768, 1362, 1527, 1638, 1808
TspGWI ACGGA 1 cut(s) 1223
TspRI CASTG 3 cut(s) 889, 1573, 1579
Vha464I CTTAAG 1 cut(s) 1868
VpaK11BI GGWCC 3 cut(s) 1067, 1289, 1823
XagI CCTNNNNNAGG 1 cut(s) 1712
XapI RAATTY 2 cut(s) 707, 1581
XceI RCATGY 1 cut(s) 1127
XcmI CCANNNNNNNNNTGG 3 cut(s) 805, 811, 1161
XspI CTAG 2 cut(s) 453, 1041
ZrmI AGTACT 1 cut(s) 368
Zsp2I ATGCAT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.