Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021955.1

Orthogroup ID

OG0012914

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1524

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021955.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

attggtgagggtgaaaagttagttcgggccctttttggagtagccagttgtcggcagccagctgtaatttttgttgacgaaatcgactcacttctctcacagcgtaagtcagaaggtgaacatgaatcaagtaggcgactcaaaacacagtttcttattgaaatggaaggctttgacagtggcagtgagcaaattcttctaataggggcaacaaatcgaccccaagagcttgatgaagcagcacgtaggcgacttactaagagactttacattccgctgcctgcatcagaagcgagagcctggatagtggagaatctcctggagaaggatggtctattcaaactttcaagggaagatattgataacatatgcaaattaacagaagggtactcaggatcagacatgaaaaacttagtgaaggatgcctctatgggtcctctaagagaagctctgagacaaggcatagaaataacaaatcttaagaaggaggatatgcgcccggtaacttttcaggattttgagagtgcattacatgaggtgaggccctctgtttccttgaatgagcttggtacctatgatgattggaacaagcaatttggaagtttgtccctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Vps4_C

Protein Analysis

204

Amino Acids

23.06

Weight (kDa)

5.09

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27120
fragaria_vesca	FvH4_6g53320
malus_domestica	MD09G1011500.v1.1 MD17G1012000.v1.1
prunus_persica	Prupe.3G305500_v2.0.a1
pyrus_communis	pycom111g00980 pycom17g00970
rosa_chinensis	RchiOBHm_Chr2g0175481
rosa_laevigata	RLG00000022331
rosa_multiflora	Rmu_sc0003302.1_g000002 Rmu_sc0021955.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077280
rosa_rugosa	Rorug02G0585100
rosa_samantha	Rh2AG664600 Rh2BG675300 Rh2CG638500 Rh2DG689300
rosa_wichuraiana	Rw2G054470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	569
AccB1I	GGYRCC	1 cut(s)	569
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	192
AfaI	GTAC	2 cut(s)	389, 571
AfiI	CCNNNNNNNGG	2 cut(s)	51, 325
AflII	CTTAAG	1 cut(s)	479
AgsI	TTSAA	4 cut(s)	161, 340, 348, 559
AjnI	CCWGG	2 cut(s)	299, 318
AluBI	AGCT	4 cut(s)	62, 229, 449, 565
AluI	AGCT	4 cut(s)	62, 229, 449, 565
Alw26I	GTCTC	2 cut(s)	256, 448
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	2 cut(s)	27, 542
ApaI	GGGCCC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	55, 239, 277
ApoI	RAATTY	1 cut(s)	192
Asp718I	GGTACC	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	4 cut(s)	27, 28, 434, 543
AsuC2I	CCSGG	1 cut(s)	500
AsuHPI	GGTGA	4 cut(s)	17, 23, 128, 550
AvaII	GGWCC	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	31
BbvI	GCAGC	3 cut(s)	67, 251, 264
BccI	CCATC	1 cut(s)	323
BciT130I	CCWGG	2 cut(s)	301, 320
BcnI	CCSGG	1 cut(s)	500
BcoDI	GTCTC	2 cut(s)	256, 448
BfrI	CTTAAG	1 cut(s)	479
BisI	GCNGC	3 cut(s)	56, 240, 278
BlsI	GCNGC	3 cut(s)	57, 241, 279
Bme1390I	CCNGG	3 cut(s)	301, 320, 500
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	4 cut(s)	27, 28, 434, 543
BmiI	GGNNCC	3 cut(s)	29, 435, 571
BmrFI	CCNGG	3 cut(s)	301, 320, 500
BmsI	GCATC	2 cut(s)	293, 412
BpmI	CTGGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 325
Bse1I	ACTGG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	301, 320
BseGI	GGATG	2 cut(s)	334, 427
BseLI	CCNNNNNNNGG	2 cut(s)	51, 325
BseMII	CTCAG	2 cut(s)	405, 443
BseNI	ACTGG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	67, 251, 264
BshFI	GGCC	2 cut(s)	29, 544
BshNI	GGYRCC	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	500
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	2 cut(s)	51, 325
BsmAI	GTCTC	2 cut(s)	256, 448
BsmFI	GGGAC	1 cut(s)	592
BsnI	GGCC	2 cut(s)	29, 544
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	395
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	2 cut(s)	29, 544
BspCNI	CTCAG	2 cut(s)	404, 444
BspLI	GGNNCC	3 cut(s)	29, 435, 571
BspPI	GGATC	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	569
BspTI	CTTAAG	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	395
Bst2UI	CCWGG	2 cut(s)	301, 320
Bst4CI	ACNGT	2 cut(s)	150, 179
BstAFI	CTTAAG	1 cut(s)	479
BstBAI	YACGTR	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	60, 282
BstDEI	CTNAG	5 cut(s)	258, 391, 412, 440, 452
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	334, 427
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	1 cut(s)	398
BstMAI	GTCTC	2 cut(s)	256, 448
BstMBI	GATC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	2 cut(s)	301, 320
BstSCI	CCNGG	3 cut(s)	299, 318, 498
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	3 cut(s)	67, 251, 264
BsuRI	GGCC	2 cut(s)	29, 544
BtsCI	GGATG	2 cut(s)	334, 427
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	184, 190
Cac8I	GCNNGC	2 cut(s)	60, 282
CfoI	GCGC	1 cut(s)	498
Cfr13I	GGNCC	4 cut(s)	27, 28, 434, 543
Csp6I	GTAC	2 cut(s)	388, 570
CviAII	CATG	3 cut(s)	122, 403, 533
CviQI	GTAC	2 cut(s)	388, 570
DdeI	CTNAG	5 cut(s)	258, 391, 412, 440, 452
DpnI	GATC	1 cut(s)	397
DpnII	GATC	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	434
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	3 cut(s)	28, 434, 543
EcoRII	CCWGG	2 cut(s)	299, 318
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	3 cut(s)	125, 406, 536
FaiI	YATR	9 cut(s)	123, 368, 370, 404, 431, 464, 494, 534, 576
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	3 cut(s)	121, 402, 532
FauNDI	CATATG	1 cut(s)	368
Fnu4HI	GCNGC	3 cut(s)	56, 240, 278
FokI	GGATG	2 cut(s)	341, 434
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	56, 240, 278
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	3 cut(s)	56, 240, 278
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	29, 544
HapII	CCGG	1 cut(s)	500
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	3 cut(s)	125, 406, 536
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	4 cut(s)	86, 125, 138, 313
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	4 cut(s)	17, 23, 128, 550
Hpy166II	GTNNAC	2 cut(s)	76, 119
Hpy188I	TCNGA	4 cut(s)	112, 289, 400, 453
Hpy188III	TCNNGA	2 cut(s)	393, 512
Hpy8I	GTNNAC	2 cut(s)	76, 119
HpyAV	CCTTC	6 cut(s)	107, 161, 319, 377, 412, 478
HpyCH4III	ACNGT	2 cut(s)	150, 179
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	284, 372, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	5 cut(s)	258, 391, 412, 440, 452
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	3 cut(s)	125, 406, 536
HspAI	GCGC	1 cut(s)	496
KpnI	GGTACC	1 cut(s)	573
Kzo9I	GATC	1 cut(s)	395
Lsp1109I	GCAGC	3 cut(s)	67, 251, 264
LweI	GCATC	2 cut(s)	293, 412
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	1 cut(s)	397
MboI	GATC	1 cut(s)	395
MboII	GAAGA	2 cut(s)	188, 365
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	4 cut(s)	66, 192, 374, 593
MlyI	GAGTC	2 cut(s)	80, 132
MnlI	CCTC	6 cut(s)	436, 447, 481, 529, 534, 556
MseI	TTAA	2 cut(s)	377, 480
MspA1I	CMGCKG	2 cut(s)	62, 277
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	3 cut(s)	301, 320, 500
MvaI	CCWGG	2 cut(s)	301, 320
MwoI	GCNNNNNNNGC	1 cut(s)	290
NciI	CCSGG	1 cut(s)	500
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	1 cut(s)	395
NlaIII	CATG	3 cut(s)	125, 406, 536
NlaIV	GGNNCC	3 cut(s)	29, 435, 571
PfeI	GAWTC	2 cut(s)	125, 313
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	57, 241, 279
PleI	GAGTC	2 cut(s)	80, 132
PpsI	GAGTC	2 cut(s)	80, 132
Ppu21I	YACGTR	1 cut(s)	245
PpuMI	RGGWCCY	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	434
Psp6I	CCWGG	2 cut(s)	299, 318
PspGI	CCWGG	2 cut(s)	299, 318
PspN4I	GGNNCC	3 cut(s)	29, 435, 571
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	4 cut(s)	27, 28, 434, 543
PspPPI	RGGWCCY	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	389, 571
RsaNI	GTAC	2 cut(s)	388, 570
SaqAI	TTAA	2 cut(s)	377, 480
SatI	GCNGC	3 cut(s)	56, 240, 278
Sau3AI	GATC	1 cut(s)	395
Sau96I	GGNCC	4 cut(s)	27, 28, 434, 543
SchI	GAGTC	2 cut(s)	80, 132
ScrFI	CCNGG	3 cut(s)	301, 320, 500
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	8 cut(s)	64, 118, 231, 247, 451, 540, 567, 575
SfaNI	GCATC	2 cut(s)	293, 412
SinI	GGWCC	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	4 cut(s)	66, 192, 374, 593
SsiI	CCGC	1 cut(s)	275
StyD4I	CCNGG	3 cut(s)	299, 318, 498
TaaI	ACNGT	2 cut(s)	150, 179
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	84, 217
TasI	AATT	4 cut(s)	66, 192, 374, 593
TfiI	GAWTC	2 cut(s)	125, 313
Tru1I	TTAA	2 cut(s)	377, 480
Tru9I	TTAA	2 cut(s)	377, 480
TscAI	CASTG	2 cut(s)	184, 190
TseI	GCWGC	3 cut(s)	55, 239, 277
TspDTI	ATGAA	3 cut(s)	138, 249, 419
TspRI	CASTG	2 cut(s)	184, 190
Vha464I	CTTAAG	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	434
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.