MD17G1012000.v1.1

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012914
Physical Location & Seq
Reverse (-)
1091664 .. 1092369
706 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1012000.v1.1.491

Sequence Viewer

Length: 213 bp
ATGAAAAACTTGGTGAAGGATGCCTCAATGGGTCCACTAAGAGAAGCTCTGAAACAAGGCATCGAAATAACAAAACTGAAAAAAGAGGATATGCGTCCGGTAACTGTTCAGGACTTTGAAAGTGCATTGCAAGAAGTGAGGCCTTCTGTTTCCTTAAACGAGCTCTGCACGTATGAGGAATGGAACAAGCAACTTGGAAGCTTGTCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

71

Amino Acids

7.97

Weight (kDa)

5.36

Isoelectric Point (pI)

57.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps4_C PF09336 31 - 66 5.4e-09 Vps4 C terminal oligomerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27120
fragaria_vesca FvH4_6g53320
malus_domestica MD09G1011500.v1.1 MD17G1012000.v1.1
prunus_persica Prupe.3G305500_v2.0.a1
pyrus_communis pycom111g00980 pycom17g00970
rosa_chinensis RchiOBHm_Chr2g0175481
rosa_laevigata RLG00000022331
rosa_multiflora Rmu_sc0003302.1_g000002 Rmu_sc0021955.1_g000001
rosa_roxburghii Rroxscaffold_2G00077280
rosa_rugosa Rorug02G0585100
rosa_samantha Rh2AG664600 Rh2BG675300 Rh2CG638500 Rh2DG689300
rosa_wichuraiana Rw2G054470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 3 cut(s) 47, 163, 201
AluI AGCT 3 cut(s) 47, 163, 201
Alw21I GWGCWC 1 cut(s) 165
AoxI GGCC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 25
AvaII GGWCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 33
BmsI GCATC 2 cut(s) 10, 69
BsaAI YACGTR 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 97
Bse3DI GCAATG 1 cut(s) 125
BseGI GGATG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 125
BsgI GTGCAG 1 cut(s) 151
BshFI GGCC 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 98
BsnI GGCC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 165
BspANI GGCC 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 125
Bst4CI ACNGT 2 cut(s) 106, 210
BstBAI YACGTR 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 25
BsuRI GGCC 1 cut(s) 142
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 1 cut(s) 83
CviJI RGCY 4 cut(s) 47, 142, 163, 201
CviKI_1 RGCY 4 cut(s) 47, 142, 163, 201
DdeI CTNAG 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 163
Eco147I AGGCCT 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 165
FaiI YATR 2 cut(s) 92, 174
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 165
HaeIII GGCC 1 cut(s) 142
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 199
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 10, 153
HpyCH4III ACNGT 2 cut(s) 106, 210
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 3 cut(s) 125, 130, 168
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 170
LpnPI CCDG 2 cut(s) 95, 111
LweI GCATC 2 cut(s) 10, 69
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 2 cut(s) 100, 204
MhlI GDGCHC 1 cut(s) 165
MnlI CCTC 4 cut(s) 34, 79, 132, 169
MseI TTAA 1 cut(s) 155
MspI CCGG 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 204
PceI AGGCCT 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 1 cut(s) 32
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 155
Sau96I GGNCC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 165
SetI ASST 4 cut(s) 49, 165, 173, 203
SfaNI GCATC 2 cut(s) 10, 69
SgeI CNNG 9 cut(s) 22, 68, 110, 122, 143, 172, 181, 199, 206
SinI GGWCC 1 cut(s) 32
SseBI AGGCCT 1 cut(s) 142
SstI GAGCTC 1 cut(s) 165
StuI AGGCCT 1 cut(s) 142
TaaI ACNGT 2 cut(s) 106, 210
TaiI ACGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 63
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.