FvH4_6g53320

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012914
Physical Location & Seq
Forward (+)
39115405 .. 39121838
6434 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53320.t1

Sequence Viewer

Length: 2001 bp
ATGGCGGGAAAGGAGGAACTGAACTCCGGCGAAGAGGTCTGCTGGAGGAAGCAAGCCGACGATAACCTACACCGCCTTCAATCTCTTCTCTTCGGAGCAGAACTCGCCGCCGACAGAAACGACTTCTCCGCCTCTCAGATCCTCAGTCTTCGTCTCCTCGGCTTTCTCGACTCACAGTCTCACTCTCAGCTCGACCGTGCTTTCGTCAGCCCTATCCGCCGCGAAGCCGTCTCCAAGCTCGGTGAGGCCCGCCGCGAACTGATTCCTGGTTCCGATCGCAAAGCTTTCGAGCAAGCGAAAAAGGATCCTGGTTTTGTTTTCAGCACAAAGGGAGATATTGACATTGGGAGGATTAAACAATCAAAGTACTTTCAAGCTCTTCTTCGGCAGTCTAACCATGGAAAGGCTGCGAATGATTTGGGAGATCAATTGGAGAAGCGGGAAAAGTTGAATAGCAAGTTATCAAAAGCCATGACACAAACTAAATTGACATCATTGTACAAAAACAACATTGGGACAGCAAGTAACACATCTCGTAGTTCTTGGGTTCCTAGAAGTAACAGCTCTGATGACTGCACTGTTGTTGAAAAGCGTCACTCTCATCACAACCGCAACAGCAGTCATAGTACCTCGTCTTTTCAAAAAGTGGAAGATGAAGAAAGAGCTCATGGGAATCCCTTGGGCAGTAAACGTGTACACAGGGAATTTAACAGCCCCATTCTTGATACTACAAAGTCCCCATCAGCCAATGAAGATGCTAAAGCCGATGTTTCTGGCAATGGATTCGTAACTGCCAAAGCCAAATTGGAAATGGACGTAAGGCAAAGGCGAGGGTTAGCTGCATCACCAAATGCTTCTGTCTCTCCTCAAAGTGATAACAGTGTTGCTAATAGGGGTTTTAACACGAGATCATATGGTGTTTCACGTCGAGGTGTCCGTGGTAATTTTGTTCCTCCTGTTAGATCTAATGGGGGCAATGTTGGGAATATGACTTCAAAAATTGGTGGAAAGTCAGATGATGCATTAGATGACTCAACAAGGAGCTGTATGGAATTTCTCTGCGGTCCAGATGGGGAGCTCCCAGAAAAACTAAGGAACTTGGAACCTCGTCTTATTGAACATGTCAGTAATGAGATTATGGACAAGGATCCTAATGTTCGATGGAATGATATTGCTGGTTTGGACCATGCTAAAAAGTGTGTGACAGAGATGGTTATATGGCCACTATTACGTCCTGATATTTTCAAAGGTTGTCGTTCTCCTGGAAAGGGTCTTCTTCTCTTCGGTCCACCTGGAACAGGCAAAACAATGATTGGGAAAGCCATAGCTGGAGAGGCAAAAGCAACATTTTTCTACATCTCTGCCAGTTCATTGACGAGCAAATGGATTGGTGAGGGTGAAAAGTTAGTTCGGGCCCTTTTTGGAGTAGCCAGTTGTCGGCAGCCAGCTGTGATTTTTGTTGACGAAATCGACTCACTTCTCTCGCAGCGTAAGTCAGAAGGCGAACATGAATCAAGTAGGCGACTCAAAACACAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGCAGTGAGCAAATTCTTCTTATAGGAGCAACAAATCGACCCCAAGAGCTTGATGAAGCAGCACGCAGGCGACTAACTAAGCGACTTTACATTCCTCTTCCTTCATCAGAAGCAAGAGCCTGGATAGTGGAGAATCTCCTTGAGAAGGATGGACTATTCAAACTATCAAGGGAAGATATTGGTAACATATGCAAGTTAACAGAAGGGTACTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCCTCTATGGGTCCTCTAAGAGAAGCTTTAAGACAAGGCATAGAAATAACAAAGCTTAAGAAGGAGGATATGCGCCCAGTAACTTTTCAGGATTTTGAGAGTGCGTTACACGAGGTGAGGCCCTCTGTTTCCTTGAATGAGCTTGGTACCTATGATGATTGGAACAAGCAATTTGGAAGCTTGTCCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

667

Amino Acids

73.84

Weight (kDa)

8.93

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FIGL1_N PF24347 12 - 86 7.9e-35 FIGL1 N-terminal domain
AAA PF00004 425 - 555 2.5e-39 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 580 - 620 3e-09 AAA+ lid domain
Vps4_C PF09336 628 - 662 3e-07 Vps4 C terminal oligomerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27120
fragaria_vesca FvH4_6g53320
malus_domestica MD09G1011500.v1.1 MD17G1012000.v1.1
prunus_persica Prupe.3G305500_v2.0.a1
pyrus_communis pycom111g00980 pycom17g00970
rosa_chinensis RchiOBHm_Chr2g0175481
rosa_laevigata RLG00000022331
rosa_multiflora Rmu_sc0003302.1_g000002 Rmu_sc0021955.1_g000001
rosa_roxburghii Rroxscaffold_2G00077280
rosa_rugosa Rorug02G0585100
rosa_samantha Rh2AG664600 Rh2BG675300 Rh2CG638500 Rh2DG689300
rosa_wichuraiana Rw2G054470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1955
AccB1I GGYRCC 1 cut(s) 1955
AccII CGCG 2 cut(s) 222, 255
AclWI GGATC 6 cut(s) 133, 299, 312, 1142, 1155, 1789
AcoI YGGCCR 1 cut(s) 1220
AcsI RAATTY 3 cut(s) 704, 1052, 1578
AdeI CACNNNGTG 1 cut(s) 1924
AfaI GTAC 6 cut(s) 368, 500, 628, 696, 1775, 1957
AfiI CCNNNNNNNGG 5 cut(s) 403, 1268, 1298, 1437, 1711
AflII CTTAAG 1 cut(s) 1865
AflIII ACRYGT 2 cut(s) 691, 1120
AhdI GACNNNNNGTC 1 cut(s) 175
AjiI CACGTC 1 cut(s) 926
AjnI CCWGG 5 cut(s) 265, 307, 1261, 1291, 1685
Alw21I GWGCWC 2 cut(s) 667, 1080
Alw26I GTCTC 4 cut(s) 158, 183, 235, 865
AlwI GGATC 6 cut(s) 133, 299, 312, 1142, 1155, 1789
AoxI GGCC 4 cut(s) 246, 1220, 1413, 1928
ApaI GGGCCC 1 cut(s) 1417
ApeKI GCWGC 5 cut(s) 407, 839, 1441, 1486, 1625
ApoI RAATTY 3 cut(s) 704, 1052, 1578
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
Asp700I GAANNNNTTC 1 cut(s) 261
Asp718I GGTACC 1 cut(s) 1955
AspLEI GCGC 1 cut(s) 1884
AspS9I GGNCC 8 cut(s) 247, 1064, 1183, 1286, 1413, 1414, 1820, 1929
AsuHPI GGTGA 5 cut(s) 254, 837, 1403, 1409, 1936
AvaII GGWCC 4 cut(s) 1064, 1183, 1286, 1820
BaeGI GKGCMC 1 cut(s) 1417
BalI TGGCCA 1 cut(s) 1222
BamHI GGATCC 2 cut(s) 304, 1147
BanI GGYRCC 1 cut(s) 1955
BanII GRGCYC 3 cut(s) 667, 1080, 1417
BauI CACGAG 2 cut(s) 904, 1919
BbsI GAAGAC 2 cut(s) 140, 1265
Bbv12I GWGCWC 2 cut(s) 667, 1080
BbvI GCAGC 5 cut(s) 394, 826, 1453, 1498, 1637
BccI CCATC 5 cut(s) 748, 1064, 1155, 1204, 1709
BceAI ACGGC 1 cut(s) 212
BcgI CGANNNNNNTGC 4 cut(s) 268, 302, 766, 800
BciT130I CCWGG 5 cut(s) 267, 309, 1263, 1293, 1687
BcoDI GTCTC 4 cut(s) 158, 183, 235, 865
BfaI CTAG 2 cut(s) 552, 1999
BfrI CTTAAG 1 cut(s) 1865
BglII AGATCT 1 cut(s) 962
BisI GCNGC 8 cut(s) 108, 220, 253, 408, 840, 1442, 1487, 1626
BlsI GCNGC 8 cut(s) 109, 221, 254, 409, 841, 1443, 1488, 1627
BmcAI AGTACT 1 cut(s) 368
Bme1390I CCNGG 5 cut(s) 267, 309, 1263, 1293, 1687
Bme18I GGWCC 4 cut(s) 1064, 1183, 1286, 1820
BmeRI GACNNNNNGTC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 926
BmgT120I GGNCC 8 cut(s) 247, 1064, 1183, 1286, 1413, 1414, 1820, 1929
BmiI GGNNCC 8 cut(s) 271, 306, 549, 1104, 1149, 1415, 1821, 1957
BmrFI CCNGG 5 cut(s) 267, 309, 1263, 1293, 1687
BmrI ACTGGG 1 cut(s) 1880
BmsI GCATC 4 cut(s) 745, 851, 1009, 1798
BmuI ACTGGG 1 cut(s) 1880
BpiI GAAGAC 2 cut(s) 140, 1265
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpmI CTGGAG 2 cut(s) 64, 1350
BpuEI CTTGAG 1 cut(s) 1727
BsaJI CCNNGG 4 cut(s) 157, 397, 678, 937
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 5 cut(s) 403, 1268, 1298, 1437, 1711
Bse1I ACTGG 3 cut(s) 1365, 1431, 1886
Bse3DI GCAATG 2 cut(s) 784, 982
BseBI CCWGG 5 cut(s) 267, 309, 1263, 1293, 1687
BseDI CCNNGG 4 cut(s) 157, 397, 678, 937
BseGI GGATG 2 cut(s) 1720, 1813
BseLI CCNNNNNNNGG 5 cut(s) 403, 1268, 1298, 1437, 1711
BseMI GCAATG 2 cut(s) 784, 982
BseMII CTCAG 4 cut(s) 149, 157, 200, 1791
BseNI ACTGG 3 cut(s) 1365, 1431, 1886
BseRI GAGGAG 2 cut(s) 146, 855
BseSI GKGCMC 1 cut(s) 1417
BseXI GCAGC 5 cut(s) 394, 826, 1453, 1498, 1637
BsgI GTGCAG 1 cut(s) 559
Bsh1236I CGCG 2 cut(s) 222, 255
Bsh1285I CGRYCG 2 cut(s) 196, 277
BshFI GGCC 4 cut(s) 248, 1222, 1415, 1930
BshNI GGYRCC 1 cut(s) 1955
BsiEI CGRYCG 2 cut(s) 196, 277
BsiHKAI GWGCWC 2 cut(s) 667, 1080
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 3 cut(s) 529, 721, 1978
BslI CCNNNNNNNGG 5 cut(s) 403, 1268, 1298, 1437, 1711
BsmAI GTCTC 4 cut(s) 158, 183, 235, 865
BsmBI CGTCTC 2 cut(s) 158, 235
BsmFI GGGAC 3 cut(s) 529, 721, 1978
BsnI GGCC 4 cut(s) 248, 1222, 1415, 1930
Bsp120I GGGCCC 1 cut(s) 1413
Bsp1286I GDGCHC 3 cut(s) 667, 1080, 1417
Bsp1407I TGTACA 2 cut(s) 498, 694
Bsp143I GATC 8 cut(s) 138, 274, 304, 424, 908, 962, 1147, 1781
Bsp19I CCATGG 1 cut(s) 397
BspANI GGCC 4 cut(s) 248, 1222, 1415, 1930
BspCNI CTCAG 4 cut(s) 148, 156, 199, 1790
BspFNI CGCG 2 cut(s) 222, 255
BspLI GGNNCC 8 cut(s) 271, 306, 549, 1104, 1149, 1415, 1821, 1957
BspPI GGATC 6 cut(s) 133, 299, 312, 1142, 1155, 1789
BspQI GCTCTTC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 1955
BspTI CTTAAG 1 cut(s) 1865
BsrDI GCAATG 2 cut(s) 784, 982
BsrGI TGTACA 2 cut(s) 498, 694
BsrI ACTGG 3 cut(s) 1365, 1431, 1886
BssECI CCNNGG 4 cut(s) 157, 397, 678, 937
BssMI GATC 8 cut(s) 138, 274, 304, 424, 908, 962, 1147, 1781
BssSI CACGAG 2 cut(s) 904, 1919
BssT1I CCWWGG 2 cut(s) 397, 678
Bst2BI CACGAG 2 cut(s) 904, 1919
Bst2UI CCWGG 5 cut(s) 267, 309, 1263, 1293, 1687
Bst4CI ACNGT 6 cut(s) 177, 197, 580, 881, 1536, 1565
Bst6I CTCTTC 6 cut(s) 27, 90, 95, 384, 1286, 1668
BstAFI CTTAAG 1 cut(s) 1865
BstAUI TGTACA 2 cut(s) 498, 694
BstC8I GCNNGC 6 cut(s) 54, 250, 294, 1446, 1630, 1634
BstDEI CTNAG 8 cut(s) 135, 143, 186, 1091, 1644, 1777, 1798, 1826
BstDSI CCRYGG 2 cut(s) 397, 937
BstENI CCTNNNNNAGG 2 cut(s) 1296, 1709
BstF5I GGATG 2 cut(s) 1720, 1813
BstFNI CGCG 2 cut(s) 222, 255
BstHHI GCGC 1 cut(s) 1884
BstKTI GATC 8 cut(s) 141, 277, 307, 427, 911, 965, 1150, 1784
BstMAI GTCTC 4 cut(s) 158, 183, 235, 865
BstMBI GATC 8 cut(s) 138, 274, 304, 424, 908, 962, 1147, 1781
BstMCI CGRYCG 2 cut(s) 196, 277
BstMWI GCNNNNNNNGC 3 cut(s) 104, 216, 1334
BstNI CCWGG 5 cut(s) 267, 309, 1263, 1293, 1687
BstNSI RCATGY 1 cut(s) 1124
BstSCI CCNGG 5 cut(s) 265, 307, 1261, 1291, 1685
BstSLI GKGCMC 1 cut(s) 1417
BstUI CGCG 2 cut(s) 222, 255
BstV1I GCAGC 5 cut(s) 394, 826, 1453, 1498, 1637
BstV2I GAAGAC 2 cut(s) 140, 1265
BstX2I RGATCY 4 cut(s) 138, 304, 962, 1147
BstYI RGATCY 4 cut(s) 138, 304, 962, 1147
BsuRI GGCC 4 cut(s) 248, 1222, 1415, 1930
BtgI CCRYGG 2 cut(s) 397, 937
BtrI CACGTC 1 cut(s) 926
BtsCI GGATG 2 cut(s) 1720, 1813
BtsI GCAGTG 1 cut(s) 1576
BtsIMutI CAGTG 4 cut(s) 576, 886, 1570, 1576
Cac8I GCNNGC 6 cut(s) 54, 250, 294, 1446, 1630, 1634
CfoI GCGC 1 cut(s) 1884
Cfr13I GGNCC 8 cut(s) 247, 1064, 1183, 1286, 1413, 1414, 1820, 1929
CseI GACGC 1 cut(s) 581
Csp6I GTAC 6 cut(s) 367, 499, 627, 695, 1774, 1956
CviAII CATG 7 cut(s) 398, 472, 668, 1121, 1187, 1508, 1789
CviQI GTAC 6 cut(s) 367, 499, 627, 695, 1774, 1956
DdeI CTNAG 8 cut(s) 135, 143, 186, 1091, 1644, 1777, 1798, 1826
DpnI GATC 8 cut(s) 140, 276, 306, 426, 910, 964, 1149, 1783
DpnII GATC 8 cut(s) 138, 274, 304, 424, 908, 962, 1147, 1781
DraIII CACNNNGTG 1 cut(s) 1924
DriI GACNNNNNGTC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 1220
Eam1104I CTCTTC 6 cut(s) 27, 90, 95, 384, 1286, 1668
Eam1105I GACNNNNNGTC 1 cut(s) 175
EarI CTCTTC 6 cut(s) 27, 90, 95, 384, 1286, 1668
EciI GGCGGA 2 cut(s) 118, 206
Ecl136II GAGCTC 2 cut(s) 665, 1078
Eco130I CCWWGG 2 cut(s) 397, 678
Eco24I GRGCYC 3 cut(s) 667, 1080, 1417
Eco47I GGWCC 4 cut(s) 1064, 1183, 1286, 1820
Eco53kI GAGCTC 2 cut(s) 665, 1078
EcoICRI GAGCTC 2 cut(s) 665, 1078
EcoNI CCTNNNNNAGG 2 cut(s) 1296, 1709
EcoO109I RGGNCCY 3 cut(s) 1414, 1820, 1929
EcoRII CCWGG 5 cut(s) 265, 307, 1261, 1291, 1685
EcoT14I CCWWGG 2 cut(s) 397, 678
EcoT22I ATGCAT 1 cut(s) 1024
EcoT38I GRGCYC 3 cut(s) 667, 1080, 1417
ErhI CCWWGG 2 cut(s) 397, 678
Esp3I CGTCTC 2 cut(s) 158, 235
FaeI CATG 7 cut(s) 401, 475, 671, 1124, 1190, 1511, 1792
FalI AAGNNNNNCTT 4 cut(s) 366, 398, 1819, 1851
FaqI GGGAC 3 cut(s) 529, 721, 1978
FatI CATG 7 cut(s) 397, 471, 667, 1120, 1186, 1507, 1788
FauI CCCGC 2 cut(s) 257, 432
FauNDI CATATG 2 cut(s) 913, 1754
Fnu4HI GCNGC 8 cut(s) 108, 220, 253, 408, 840, 1442, 1487, 1626
FokI GGATG 2 cut(s) 1727, 1820
FriOI GRGCYC 3 cut(s) 667, 1080, 1417
Fsp4HI GCNGC 8 cut(s) 108, 220, 253, 408, 840, 1442, 1487, 1626
FspBI CTAG 2 cut(s) 552, 1999
GlaI GCGC 1 cut(s) 1883
GluI GCNGC 8 cut(s) 108, 220, 253, 408, 840, 1442, 1487, 1626
GsuI CTGGAG 2 cut(s) 64, 1350
HaeIII GGCC 4 cut(s) 248, 1222, 1415, 1930
HapII CCGG 1 cut(s) 27
HgaI GACGC 1 cut(s) 581
HhaI GCGC 1 cut(s) 1884
Hin1II CATG 7 cut(s) 401, 475, 671, 1124, 1190, 1511, 1792
Hin6I GCGC 1 cut(s) 1882
HinP1I GCGC 1 cut(s) 1882
HincII GTYRAC 2 cut(s) 1462, 1764
HindII GTYRAC 2 cut(s) 1462, 1764
HindIII AAGCTT 4 cut(s) 282, 1833, 1862, 1987
HinfI GANTC 9 cut(s) 170, 262, 673, 783, 1031, 1472, 1511, 1524, 1699
HpaI GTTAAC 1 cut(s) 1764
HpaII CCGG 1 cut(s) 27
HphI GGTGA 5 cut(s) 254, 837, 1403, 1409, 1936
Hpy166II GTNNAC 6 cut(s) 689, 695, 697, 1289, 1462, 1764
Hpy188I TCNGA 8 cut(s) 95, 138, 274, 568, 1015, 1498, 1675, 1786
Hpy188III TCNNGA 6 cut(s) 167, 722, 1067, 1235, 1779, 1898
Hpy8I GTNNAC 6 cut(s) 689, 695, 697, 1289, 1462, 1764
Hpy99I CGWCG 2 cut(s) 62, 930
HpyAV CCTTC 8 cut(s) 86, 1493, 1547, 1677, 1705, 1763, 1798, 1864
HpyCH4III ACNGT 6 cut(s) 177, 197, 580, 881, 1536, 1565
HpyCH4IV ACGT 4 cut(s) 691, 816, 925, 1231
HpyCH4V TGCA 4 cut(s) 576, 842, 1022, 1758
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 216, 1334
HpyF3I CTNAG 8 cut(s) 135, 143, 186, 1091, 1644, 1777, 1798, 1826
HpySE526I ACGT 4 cut(s) 691, 816, 925, 1231
Hsp92II CATG 7 cut(s) 401, 475, 671, 1124, 1190, 1511, 1792
HspAI GCGC 1 cut(s) 1882
KpnI GGTACC 1 cut(s) 1959
KspAI GTTAAC 1 cut(s) 1764
Kzo9I GATC 8 cut(s) 138, 274, 304, 424, 908, 962, 1147, 1781
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 5 cut(s) 95, 1041, 1075, 1083, 1592
Lsp1109I GCAGC 5 cut(s) 394, 826, 1453, 1498, 1637
LweI GCATC 4 cut(s) 745, 851, 1009, 1798
MaeI CTAG 2 cut(s) 552, 1999
MaeII ACGT 4 cut(s) 691, 816, 925, 1231
MaeIII GTNAC 8 cut(s) 524, 557, 593, 787, 1201, 1748, 1888, 1914
MalI GATC 8 cut(s) 140, 276, 306, 426, 910, 964, 1149, 1783
MboI GATC 8 cut(s) 138, 274, 304, 424, 908, 962, 1147, 1781
MfeI CAATTG 1 cut(s) 428
MflI RGATCY 4 cut(s) 138, 304, 962, 1147
MhlI GDGCHC 3 cut(s) 667, 1080, 1417
MlsI TGGCCA 1 cut(s) 1222
MluCI AATT 9 cut(s) 428, 485, 704, 803, 943, 999, 1052, 1578, 1979
MluNI TGGCCA 1 cut(s) 1222
MlyI GAGTC 4 cut(s) 164, 1025, 1466, 1518
Mox20I TGGCCA 1 cut(s) 1222
Mph1103I ATGCAT 1 cut(s) 1024
MroXI GAANNNNTTC 1 cut(s) 261
MscI TGGCCA 1 cut(s) 1222
MseI TTAA 6 cut(s) 354, 708, 900, 1763, 1838, 1866
MslI CAYNNNNRTG 1 cut(s) 1547
Msp20I TGGCCA 1 cut(s) 1222
MspA1I CMGCKG 1 cut(s) 1448
MspCI CTTAAG 1 cut(s) 1865
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 5 cut(s) 267, 309, 1263, 1293, 1687
MunI CAATTG 1 cut(s) 428
MvaI CCWGG 5 cut(s) 267, 309, 1263, 1293, 1687
MvnI CGCG 2 cut(s) 222, 255
MwoI GCNNNNNNNGC 3 cut(s) 104, 216, 1334
NcoI CCATGG 1 cut(s) 397
NdeI CATATG 2 cut(s) 913, 1754
NdeII GATC 8 cut(s) 138, 274, 304, 424, 908, 962, 1147, 1781
NlaIII CATG 7 cut(s) 401, 475, 671, 1124, 1190, 1511, 1792
NlaIV GGNNCC 8 cut(s) 271, 306, 549, 1104, 1149, 1415, 1821, 1957
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 2 cut(s) 593, 1201
NsiI ATGCAT 1 cut(s) 1024
NspI RCATGY 1 cut(s) 1124
PciI ACATGT 1 cut(s) 1120
PciSI GCTCTTC 1 cut(s) 384
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 934
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 5 cut(s) 262, 673, 783, 1511, 1699
PfoI TCCNGGA 1 cut(s) 1261
PkrI GCNGC 8 cut(s) 109, 221, 254, 409, 841, 1443, 1488, 1627
Ple19I CGATCG 1 cut(s) 277
PleI GAGTC 4 cut(s) 164, 1025, 1466, 1518
PpsI GAGTC 4 cut(s) 164, 1025, 1466, 1518
PpuMI RGGWCCY 1 cut(s) 1820
PscI ACATGT 1 cut(s) 1120
Psp124BI GAGCTC 2 cut(s) 667, 1080
Psp5II RGGWCCY 1 cut(s) 1820
Psp6I CCWGG 5 cut(s) 265, 307, 1261, 1291, 1685
PspGI CCWGG 5 cut(s) 265, 307, 1261, 1291, 1685
PspN4I GGNNCC 8 cut(s) 271, 306, 549, 1104, 1149, 1415, 1821, 1957
PspOMI GGGCCC 1 cut(s) 1413
PspPI GGNCC 8 cut(s) 247, 1064, 1183, 1286, 1413, 1414, 1820, 1929
PspPPI RGGWCCY 1 cut(s) 1820
PsuI RGATCY 4 cut(s) 138, 304, 962, 1147
PvuI CGATCG 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 1448
RsaI GTAC 6 cut(s) 368, 500, 628, 696, 1775, 1957
RsaNI GTAC 6 cut(s) 367, 499, 627, 695, 1774, 1956
RseI CAYNNNNRTG 1 cut(s) 1547
SacI GAGCTC 2 cut(s) 667, 1080
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 6 cut(s) 354, 708, 900, 1763, 1838, 1866
SatI GCNGC 8 cut(s) 108, 220, 253, 408, 840, 1442, 1487, 1626
Sau3AI GATC 8 cut(s) 138, 274, 304, 424, 908, 962, 1147, 1781
Sau96I GGNCC 8 cut(s) 247, 1064, 1183, 1286, 1413, 1414, 1820, 1929
ScaI AGTACT 1 cut(s) 368
SchI GAGTC 4 cut(s) 164, 1025, 1466, 1518
ScrFI CCNGG 5 cut(s) 267, 309, 1263, 1293, 1687
SduI GDGCHC 3 cut(s) 667, 1080, 1417
SfaNI GCATC 4 cut(s) 745, 851, 1009, 1798
SinI GGWCC 4 cut(s) 1064, 1183, 1286, 1820
SmiMI CAYNNNNRTG 1 cut(s) 1547
SmlI CTYRAG 2 cut(s) 1706, 1865
SmoI CTYRAG 2 cut(s) 1706, 1865
Sse9I AATT 9 cut(s) 428, 485, 704, 803, 943, 999, 1052, 1578, 1979
SspMI CTAG 2 cut(s) 552, 1999
SstI GAGCTC 2 cut(s) 667, 1080
StyD4I CCNGG 5 cut(s) 265, 307, 1261, 1291, 1685
StyI CCWWGG 2 cut(s) 397, 678
TaaI ACNGT 6 cut(s) 177, 197, 580, 881, 1536, 1565
TaiI ACGT 4 cut(s) 694, 819, 928, 1234
TaqI TCGA 7 cut(s) 168, 192, 288, 928, 1159, 1470, 1603
TaqII GACCGA 1 cut(s) 1274
TasI AATT 9 cut(s) 428, 485, 704, 803, 943, 999, 1052, 1578, 1979
TatI WGTACW 3 cut(s) 366, 498, 694
TauI GCSGC 3 cut(s) 110, 222, 255
TfiI GAWTC 5 cut(s) 262, 673, 783, 1511, 1699
Tru1I TTAA 6 cut(s) 354, 708, 900, 1763, 1838, 1866
Tru9I TTAA 6 cut(s) 354, 708, 900, 1763, 1838, 1866
TscAI CASTG 4 cut(s) 583, 886, 1570, 1576
TseFI GTSAC 2 cut(s) 593, 1201
TseI GCWGC 5 cut(s) 407, 839, 1441, 1486, 1625
Tsp45I GTSAC 2 cut(s) 593, 1201
TspDTI ATGAA 7 cut(s) 669, 765, 1359, 1524, 1635, 1659, 1805
TspGWI ACGGA 1 cut(s) 926
TspRI CASTG 4 cut(s) 583, 886, 1570, 1576
Vha464I CTTAAG 1 cut(s) 1865
VpaK11BI GGWCC 4 cut(s) 1064, 1183, 1286, 1820
XagI CCTNNNNNAGG 2 cut(s) 1296, 1709
XapI RAATTY 3 cut(s) 704, 1052, 1578
XceI RCATGY 1 cut(s) 1124
XcmI CCANNNNNNNNNTGG 2 cut(s) 802, 808
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 2 cut(s) 552, 1999
ZrmI AGTACT 1 cut(s) 368
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.