Rh2CG638500

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012914
Physical Location & Seq
Forward (+)
80959747 .. 80966346
6600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG638500.1

Sequence Viewer

Length: 1992 bp
ATGGCGGGAAAGGAGGAACCGAACTCCGGCGAAGAGGTCTGCTGGAGAAAGCAAGTCGGCGATAACGTAAACCGCCTTCAGTCCCTTCTCTTCGGAGCCGAACTCGCCGCCGAGAGAAATGACTTCTCCTCCGCTCAGATATTCTCTCTTCGTCTCCTCGGCTTTCTCGACTCACAGTCTCACTCTCAGCTCGACGGCGCTTTCGTCAGCCCTATTCGCCGCGAAGTCGTCTCCAAGCTCGGAGAGGCCCGCCGTGCCCTCACTTCTGATTCCGATCGCAAAGCTTTCGAGCAAGCGAAAAAAGATCCTGGTTTTGTTTTCAGCACAAAGGGAGATATCGACATTGGGAGGATTAAACAGTCAAAGTACTTTCAGGCTCTTCTTCAGCAGCCTAACAATGGAAAGGTTGTGAATGATTTGGGAGATCAACCGGAGAGGCGGGACAAATTGGCTAGCAAGTTATCAAAAGCTATGACACAAACTAAGTTGACATCATTGTACAAAAACAACATTGGGACGGCAAGTAAGGACACATCCCGTAGTTCTTGGGCTCCTAAAAGTAACAGCTCTGAGGACTGCACTATTGTGGAAAAGCGTCACTCTCATCACAACCGTAACAGCAGTCATACTACCTCATCTTTTCAAAAAGTTGAAGAGGAAGAAAGAGCTCATGGGTATCCCTTAGGCCCTAAACGTGTACACAGGGAATTTAATAGCCCCATTATTGATAATATGAAGTCCCCATCAGCCAATGAAGATGCTAAAGCCGATGTTTCTGGCAATGGATTTGTAACTGCCAAAGCCAAATTGGAAATGGATGTGAGGCAAAGGCGAGGGTTAGCTGCATCATCAAATGCTTCTGTCTCTCCTCAAAGTGATAACAGTGTTGCTAATAGGGGTTTTAGCACGAGATCATATGGTGTTTCACGTCGAGGTGTCCGCGGTAATTTTATTCCTCCCGTCAGATCTAATGGGGGCAATGTTGGGAATATGACTTCAAAAATTGGTGGAAAGTCGGATGATGCATTAGATGACTCAACTAGGAGCTGTATGGAAATGCTCTGCGGTCCTGATGGGGAGCTCCCAGAAAAATTAAGGAACTTGGAACCTCATCTTATTGAACATGTCAGTAATGAGATTATGGACAAGGATCCAAATGTTCGATGGAATGATATTGCTGGCTTGGATCATGCTAAAAAGTGTGTGACGGAGATGGTTATATGGCCCCTGTTACGTCCCGACATTTTCAAAGGATGTCGTTCTCCTGGAAAGGGTCTTCTTCTCTTCGGTCCACCAGGAACAGGCAAAACAATGATTGGGAAAGCCATAGCTGGAGAGGCAAAAGCAACGTTCTTCTACATCTCTGCCAGTTCATTGACGAGCAAATGGATTGGTGAGGGTGAAAAGTTAGTTCGGGCCCTTTTTGGAGTGGCCAGTTGTCGGCAGCCAGCTGTAATTTTTGTTGACGAAATCGACTCACTTCTCTCACAGCGTAAGTCAGAAGGTGAACATGAATCAAGTAGGCGACTCAAAACACAGTTTCTTATTGAAATGGAAGGCTTTGACAGTGGCAGTGAGCAAATTCTTCTAATAGGGGCAACAAATCGACCCCAAGAGCTTGATGAAGCAGCACGTAGGCGACTTACTAAGAGACTTTACATTCCGCTGCCTGCATCAGAAGCGAGAGCCTGGATAGTGGAGAATCTCCTGGAGAAGGATGGTCTATTCAAACTTTCAAAGGAAGATATTGATAACATATGCAAATTAACAGAAGGGTACTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCCTCTATGGGTCCTCTAAGAGAAGCTCTGAGACAAGGCATAGAAATAACAAATCTTAAGAAGGAGGATATGCGCCTGGTAACTTTTCAGGTAAAAAACTACAGACTTACACAGCTCACTCAGCCTCCTTGTTATTTGTCCTGCATAATTATAATTTGGTTTTGTTTTATAGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

663

Amino Acids

73.57

Weight (kDa)

8.95

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FIGL1_N PF24347 12 - 86 2.4e-34 FIGL1 N-terminal domain
AAA PF00004 426 - 556 2.5e-39 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 581 - 623 4.2e-10 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012914)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27120
fragaria_vesca FvH4_6g53320
malus_domestica MD09G1011500.v1.1 MD17G1012000.v1.1
prunus_persica Prupe.3G305500_v2.0.a1
pyrus_communis pycom111g00980 pycom17g00970
rosa_chinensis RchiOBHm_Chr2g0175481
rosa_laevigata RLG00000022331
rosa_multiflora Rmu_sc0003302.1_g000002 Rmu_sc0021955.1_g000001
rosa_roxburghii Rroxscaffold_2G00077280
rosa_rugosa Rorug02G0585100
rosa_samantha Rh2AG664600 Rh2BG675300 Rh2CG638500 Rh2DG689300
rosa_wichuraiana Rw2G054470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1964
AccBSI CCGCTC 1 cut(s) 134
AccII CGCG 2 cut(s) 222, 942
AclI AACGTT 1 cut(s) 1349
AclWI GGATC 5 cut(s) 299, 1145, 1158, 1194, 1792
AcoI YGGCCR 1 cut(s) 1431
AcsI RAATTY 2 cut(s) 707, 1581
AcuI CTGAAG 2 cut(s) 62, 368
AfaI GTAC 4 cut(s) 368, 500, 699, 1778
AfiI CCNNNNNNNGG 6 cut(s) 26, 398, 1271, 1301, 1440, 1714
AflII CTTAAG 1 cut(s) 1868
AflIII ACRYGT 2 cut(s) 694, 1123
AgsI TTSAA 8 cut(s) 644, 653, 999, 1121, 1249, 1550, 1729, 1737
AhdI GACNNNNNGTC 1 cut(s) 175
AjiI CACGTC 1 cut(s) 929
AjnI CCWGG 6 cut(s) 307, 1264, 1294, 1688, 1707, 1887
AleI CACNNNNGTG 1 cut(s) 584
Alw21I GWGCWC 2 cut(s) 670, 1083
Alw26I GTCTC 6 cut(s) 158, 183, 235, 868, 1645, 1837
AlwI GGATC 5 cut(s) 299, 1145, 1158, 1194, 1792
AoxI GGCC 5 cut(s) 246, 685, 1223, 1416, 1431
ApaI GGGCCC 1 cut(s) 1420
ApeKI GCWGC 5 cut(s) 388, 842, 1444, 1628, 1666
ApoI RAATTY 2 cut(s) 707, 1581
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspLEI GCGC 2 cut(s) 200, 1887
AspS9I GGNCC 8 cut(s) 247, 686, 1067, 1224, 1289, 1416, 1417, 1823
AsuHPI GGTGA 3 cut(s) 1406, 1412, 1517
AsuNHI GCTAGC 1 cut(s) 452
AvaII GGWCC 3 cut(s) 1067, 1289, 1823
AxyI CCTNAGG 1 cut(s) 682
BaeGI GKGCMC 2 cut(s) 259, 1420
BalI TGGCCA 1 cut(s) 1433
BamHI GGATCC 1 cut(s) 1150
BanII GRGCYC 4 cut(s) 553, 670, 1083, 1420
BarI GAAGNNNNNNTAC 2 cut(s) 60, 92
BauI CACGAG 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 1268
Bbv12I GWGCWC 2 cut(s) 670, 1083
BbvI GCAGC 5 cut(s) 400, 829, 1456, 1640, 1653
BccI CCATC 5 cut(s) 751, 1067, 1158, 1207, 1712
BceAI ACGGC 3 cut(s) 211, 237, 534
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
BciVI GTATCC 1 cut(s) 687
BcoDI GTCTC 6 cut(s) 158, 183, 235, 868, 1645, 1837
BfaI CTAG 2 cut(s) 453, 1041
BfmI CTRYAG 1 cut(s) 1912
BfoI RGCGCY 1 cut(s) 201
BfrI CTTAAG 1 cut(s) 1868
BfuI GTATCC 1 cut(s) 687
BglII AGATCT 1 cut(s) 965
BisI GCNGC 7 cut(s) 108, 220, 389, 843, 1445, 1629, 1667
BlsI GCNGC 7 cut(s) 109, 221, 390, 844, 1446, 1630, 1668
BmcAI AGTACT 1 cut(s) 368
Bme1390I CCNGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
Bme18I GGWCC 3 cut(s) 1067, 1289, 1823
BmeRI GACNNNNNGTC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 929
BmgT120I GGNCC 8 cut(s) 247, 686, 1067, 1224, 1289, 1416, 1417, 1823
BmiI GGNNCC 8 cut(s) 18, 97, 552, 1107, 1152, 1226, 1418, 1824
BmrFI CCNGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
BmsI GCATC 5 cut(s) 748, 854, 1012, 1682, 1801
BmtI GCTAGC 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 1268
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpmI CTGGAG 3 cut(s) 64, 1353, 1730
BsaAI YACGTR 1 cut(s) 1634
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 157, 940
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 1921, 1951
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 398, 1271, 1301, 1440, 1714
Bse1I ACTGG 2 cut(s) 1368, 1434
Bse21I CCTNAGG 1 cut(s) 682
Bse3DI GCAATG 2 cut(s) 787, 985
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
BseDI CCNNGG 2 cut(s) 157, 940
BseGI GGATG 6 cut(s) 533, 823, 1024, 1259, 1723, 1816
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 6 cut(s) 26, 398, 1271, 1301, 1440, 1714
BseMI GCAATG 2 cut(s) 787, 985
BseMII CTCAG 6 cut(s) 149, 200, 561, 1794, 1832, 1946
BseNI ACTGG 2 cut(s) 1368, 1434
BseRI GAGGAG 3 cut(s) 118, 146, 858
BseSI GKGCMC 2 cut(s) 259, 1420
BseXI GCAGC 5 cut(s) 400, 829, 1456, 1640, 1653
BsgI GTGCAG 1 cut(s) 562
Bsh1236I CGCG 2 cut(s) 222, 942
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 5 cut(s) 248, 687, 1225, 1418, 1433
BsiEI CGRYCG 1 cut(s) 277
BsiHKAI GWGCWC 2 cut(s) 670, 1083
BsiSI CCGG 2 cut(s) 27, 431
BslFI GGGAC 5 cut(s) 67, 455, 529, 724, 1221
BslI CCNNNNNNNGG 6 cut(s) 26, 398, 1271, 1301, 1440, 1714
BsmAI GTCTC 6 cut(s) 158, 183, 235, 868, 1645, 1837
BsmBI CGTCTC 2 cut(s) 158, 235
BsmFI GGGAC 5 cut(s) 67, 455, 529, 724, 1221
BsnI GGCC 5 cut(s) 248, 687, 1225, 1418, 1433
Bsp120I GGGCCC 1 cut(s) 1416
Bsp1286I GDGCHC 5 cut(s) 259, 553, 670, 1083, 1420
Bsp1407I TGTACA 2 cut(s) 498, 697
Bsp143I GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
BspANI GGCC 5 cut(s) 248, 687, 1225, 1418, 1433
BspCNI CTCAG 6 cut(s) 148, 199, 562, 1793, 1833, 1945
BspFNI CGCG 2 cut(s) 222, 942
BspLI GGNNCC 8 cut(s) 18, 97, 552, 1107, 1152, 1226, 1418, 1824
BspOI GCTAGC 1 cut(s) 456
BspPI GGATC 5 cut(s) 299, 1145, 1158, 1194, 1792
BspQI GCTCTTC 1 cut(s) 384
BspTI CTTAAG 1 cut(s) 1868
BsrBI CCGCTC 1 cut(s) 134
BsrDI GCAATG 2 cut(s) 787, 985
BsrGI TGTACA 2 cut(s) 498, 697
BsrI ACTGG 2 cut(s) 1368, 1434
BssECI CCNNGG 2 cut(s) 157, 940
BssMI GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
BssSI CACGAG 1 cut(s) 907
Bst2BI CACGAG 1 cut(s) 907
Bst2UI CCWGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
Bst4CI ACNGT 6 cut(s) 177, 360, 614, 884, 1539, 1568
Bst6I CTCTTC 6 cut(s) 27, 95, 153, 384, 648, 1289
BstAFI CTTAAG 1 cut(s) 1868
BstAUI TGTACA 2 cut(s) 498, 697
BstBAI YACGTR 1 cut(s) 1634
BstC8I GCNNGC 6 cut(s) 250, 294, 454, 1180, 1449, 1671
BstDSI CCRYGG 1 cut(s) 940
BstENI CCTNNNNNAGG 1 cut(s) 1712
BstF5I GGATG 6 cut(s) 533, 823, 1024, 1259, 1723, 1816
BstFNI CGCG 2 cut(s) 222, 942
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 2 cut(s) 200, 1887
BstKTI GATC 8 cut(s) 277, 307, 427, 914, 968, 1153, 1189, 1787
BstMAI GTCTC 6 cut(s) 158, 183, 235, 868, 1645, 1837
BstMBI GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 6 cut(s) 104, 216, 254, 1337, 1679, 1933
BstNI CCWGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
BstNSI RCATGY 1 cut(s) 1127
BstSCI CCNGG 6 cut(s) 307, 1264, 1294, 1688, 1707, 1887
BstSFI CTRYAG 1 cut(s) 1912
BstSLI GKGCMC 2 cut(s) 259, 1420
BstUI CGCG 2 cut(s) 222, 942
BstV1I GCAGC 5 cut(s) 400, 829, 1456, 1640, 1653
BstV2I GAAGAC 1 cut(s) 1268
BstX2I RGATCY 3 cut(s) 304, 965, 1150
BstYI RGATCY 3 cut(s) 304, 965, 1150
Bsu36I CCTNAGG 1 cut(s) 682
BsuI GTATCC 1 cut(s) 687
BsuRI GGCC 5 cut(s) 248, 687, 1225, 1418, 1433
BtgI CCRYGG 1 cut(s) 940
BtrI CACGTC 1 cut(s) 929
BtsCI GGATG 6 cut(s) 533, 823, 1024, 1259, 1723, 1816
BtsI GCAGTG 1 cut(s) 1579
BtsIMutI CAGTG 3 cut(s) 889, 1573, 1579
Cac8I GCNNGC 6 cut(s) 250, 294, 454, 1180, 1449, 1671
CfoI GCGC 2 cut(s) 200, 1887
Cfr13I GGNCC 8 cut(s) 247, 686, 1067, 1224, 1289, 1416, 1417, 1823
Cfr42I CCGCGG 1 cut(s) 943
CseI GACGC 1 cut(s) 584
Csp6I GTAC 4 cut(s) 367, 499, 698, 1777
CviAII CATG 5 cut(s) 671, 1124, 1190, 1511, 1792
CviQI GTAC 4 cut(s) 367, 499, 698, 1777
DpnI GATC 8 cut(s) 276, 306, 426, 913, 967, 1152, 1188, 1786
DpnII GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
DriI GACNNNNNGTC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 1431
Eam1104I CTCTTC 6 cut(s) 27, 95, 153, 384, 648, 1289
Eam1105I GACNNNNNGTC 1 cut(s) 175
EarI CTCTTC 6 cut(s) 27, 95, 153, 384, 648, 1289
Ecl136II GAGCTC 2 cut(s) 668, 1081
Eco24I GRGCYC 4 cut(s) 553, 670, 1083, 1420
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 3 cut(s) 1067, 1289, 1823
Eco53kI GAGCTC 2 cut(s) 668, 1081
Eco57I CTGAAG 2 cut(s) 62, 368
Eco81I CCTNAGG 1 cut(s) 682
EcoICRI GAGCTC 2 cut(s) 668, 1081
EcoNI CCTNNNNNAGG 1 cut(s) 1712
EcoO109I RGGNCCY 3 cut(s) 686, 1417, 1823
EcoRII CCWGG 6 cut(s) 307, 1264, 1294, 1688, 1707, 1887
EcoRV GATATC 1 cut(s) 337
EcoT22I ATGCAT 1 cut(s) 1027
EcoT38I GRGCYC 4 cut(s) 553, 670, 1083, 1420
Esp3I CGTCTC 2 cut(s) 158, 235
FaeI CATG 5 cut(s) 674, 1127, 1193, 1514, 1795
FaqI GGGAC 5 cut(s) 67, 455, 529, 724, 1221
FatI CATG 5 cut(s) 670, 1123, 1189, 1510, 1791
FauI CCCGC 2 cut(s) 257, 432
FauNDI CATATG 2 cut(s) 916, 1757
Fnu4HI GCNGC 7 cut(s) 108, 220, 389, 843, 1445, 1629, 1667
FokI GGATG 6 cut(s) 520, 830, 1031, 1266, 1730, 1823
FriOI GRGCYC 4 cut(s) 553, 670, 1083, 1420
Fsp4HI GCNGC 7 cut(s) 108, 220, 389, 843, 1445, 1629, 1667
FspBI CTAG 2 cut(s) 453, 1041
GlaI GCGC 2 cut(s) 199, 1886
GluI GCNGC 7 cut(s) 108, 220, 389, 843, 1445, 1629, 1667
GsuI CTGGAG 3 cut(s) 64, 1353, 1730
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 5 cut(s) 248, 687, 1225, 1418, 1433
HapII CCGG 2 cut(s) 27, 431
HgaI GACGC 1 cut(s) 584
HhaI GCGC 2 cut(s) 200, 1887
Hin1II CATG 5 cut(s) 674, 1127, 1193, 1514, 1795
Hin6I GCGC 2 cut(s) 198, 1885
HinP1I GCGC 2 cut(s) 198, 1885
HincII GTYRAC 2 cut(s) 489, 1465
HindII GTYRAC 2 cut(s) 489, 1465
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 7 cut(s) 170, 269, 1034, 1475, 1514, 1527, 1702
HpaII CCGG 2 cut(s) 27, 431
HphI GGTGA 3 cut(s) 1406, 1412, 1517
Hpy166II GTNNAC 7 cut(s) 70, 489, 698, 700, 1292, 1465, 1508
Hpy188III TCNNGA 4 cut(s) 167, 1070, 1238, 1782
Hpy8I GTNNAC 7 cut(s) 70, 489, 698, 700, 1292, 1465, 1508
Hpy99I CGWCG 2 cut(s) 197, 933
HpyAV CCTTC 8 cut(s) 86, 95, 1496, 1550, 1708, 1766, 1801, 1867
HpyCH4III ACNGT 6 cut(s) 177, 360, 614, 884, 1539, 1568
HpyCH4IV ACGT 6 cut(s) 66, 694, 928, 1234, 1349, 1633
HpyCH4V TGCA 6 cut(s) 579, 845, 1025, 1673, 1761, 1956
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 216, 254, 1337, 1679, 1933
HpySE526I ACGT 6 cut(s) 66, 694, 928, 1234, 1349, 1633
Hsp92II CATG 5 cut(s) 674, 1127, 1193, 1514, 1795
HspAI GCGC 2 cut(s) 198, 1885
KspI CCGCGG 1 cut(s) 943
Kzo9I GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 5 cut(s) 95, 556, 1044, 1078, 1086
Lsp1109I GCAGC 5 cut(s) 400, 829, 1456, 1640, 1653
LweI GCATC 5 cut(s) 748, 854, 1012, 1682, 1801
MaeI CTAG 2 cut(s) 453, 1041
MaeII ACGT 6 cut(s) 66, 694, 928, 1234, 1349, 1633
MaeIII GTNAC 7 cut(s) 560, 596, 614, 790, 1204, 1230, 1891
MalI GATC 8 cut(s) 276, 306, 426, 913, 967, 1152, 1188, 1786
MbiI CCGCTC 1 cut(s) 134
MboI GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
MflI RGATCY 3 cut(s) 304, 965, 1150
MhlI GDGCHC 5 cut(s) 259, 553, 670, 1083, 1420
MlsI TGGCCA 1 cut(s) 1433
MluNI TGGCCA 1 cut(s) 1433
MlyI GAGTC 4 cut(s) 164, 1028, 1469, 1521
MmeI TCCRAC 1 cut(s) 996
Mox20I TGGCCA 1 cut(s) 1433
Mph1103I ATGCAT 1 cut(s) 1027
MscI TGGCCA 1 cut(s) 1433
MseI TTAA 5 cut(s) 354, 711, 1094, 1766, 1869
MslI CAYNNNNRTG 1 cut(s) 584
Msp20I TGGCCA 1 cut(s) 1433
MspA1I CMGCKG 3 cut(s) 942, 1451, 1666
MspCI CTTAAG 1 cut(s) 1868
MspI CCGG 2 cut(s) 27, 431
MspR9I CCNGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
MvaI CCWGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
MvnI CGCG 2 cut(s) 222, 942
MwoI GCNNNNNNNGC 6 cut(s) 104, 216, 254, 1337, 1679, 1933
NdeI CATATG 2 cut(s) 916, 1757
NdeII GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 5 cut(s) 674, 1127, 1193, 1514, 1795
NlaIV GGNNCC 8 cut(s) 18, 97, 552, 1107, 1152, 1226, 1418, 1824
NmeAIII GCCGAG 2 cut(s) 136, 138
NmuCI GTSAC 2 cut(s) 596, 1204
NsiI ATGCAT 1 cut(s) 1027
NspI RCATGY 1 cut(s) 1127
OliI CACNNNNGTG 1 cut(s) 584
PciI ACATGT 1 cut(s) 1123
PciSI GCTCTTC 1 cut(s) 384
PcsI WCGNNNNNNNCGW 3 cut(s) 63, 165, 201
PfeI GAWTC 3 cut(s) 269, 1514, 1702
PfoI TCCNGGA 2 cut(s) 1264, 1707
PkrI GCNGC 7 cut(s) 109, 221, 390, 844, 1446, 1630, 1668
Ple19I CGATCG 1 cut(s) 277
PleI GAGTC 4 cut(s) 164, 1028, 1469, 1521
PpsI GAGTC 4 cut(s) 164, 1028, 1469, 1521
Ppu21I YACGTR 1 cut(s) 1634
PpuMI RGGWCCY 1 cut(s) 1823
PscI ACATGT 1 cut(s) 1123
PsiI TTATAA 1 cut(s) 1964
Psp124BI GAGCTC 2 cut(s) 670, 1083
Psp1406I AACGTT 1 cut(s) 1349
Psp5II RGGWCCY 1 cut(s) 1823
Psp6I CCWGG 6 cut(s) 307, 1264, 1294, 1688, 1707, 1887
PspGI CCWGG 6 cut(s) 307, 1264, 1294, 1688, 1707, 1887
PspN4I GGNNCC 8 cut(s) 18, 97, 552, 1107, 1152, 1226, 1418, 1824
PspOMI GGGCCC 1 cut(s) 1416
PspPI GGNCC 8 cut(s) 247, 686, 1067, 1224, 1289, 1416, 1417, 1823
PspPPI RGGWCCY 1 cut(s) 1823
PsuI RGATCY 3 cut(s) 304, 965, 1150
PvuI CGATCG 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 1451
RsaI GTAC 4 cut(s) 368, 500, 699, 1778
RsaNI GTAC 4 cut(s) 367, 499, 698, 1777
RseI CAYNNNNRTG 1 cut(s) 584
SacI GAGCTC 2 cut(s) 670, 1083
SacII CCGCGG 1 cut(s) 943
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 5 cut(s) 354, 711, 1094, 1766, 1869
SatI GCNGC 7 cut(s) 108, 220, 389, 843, 1445, 1629, 1667
Sau3AI GATC 8 cut(s) 274, 304, 424, 911, 965, 1150, 1186, 1784
Sau96I GGNCC 8 cut(s) 247, 686, 1067, 1224, 1289, 1416, 1417, 1823
ScaI AGTACT 1 cut(s) 368
SchI GAGTC 4 cut(s) 164, 1028, 1469, 1521
ScrFI CCNGG 6 cut(s) 309, 1266, 1296, 1690, 1709, 1889
SduI GDGCHC 5 cut(s) 259, 553, 670, 1083, 1420
SfaNI GCATC 5 cut(s) 748, 854, 1012, 1682, 1801
SfcI CTRYAG 1 cut(s) 1912
Sfr303I CCGCGG 1 cut(s) 943
SgrBI CCGCGG 1 cut(s) 943
SinI GGWCC 3 cut(s) 1067, 1289, 1823
SmiMI CAYNNNNRTG 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 1868
SmoI CTYRAG 1 cut(s) 1868
SspMI CTAG 2 cut(s) 453, 1041
SstI GAGCTC 2 cut(s) 670, 1083
StyD4I CCNGG 6 cut(s) 307, 1264, 1294, 1688, 1707, 1887
TaaI ACNGT 6 cut(s) 177, 360, 614, 884, 1539, 1568
TaiI ACGT 6 cut(s) 69, 697, 931, 1237, 1352, 1636
TaqI TCGA 8 cut(s) 168, 192, 288, 339, 931, 1162, 1473, 1606
TaqII GACCGA 1 cut(s) 1277
TatI WGTACW 3 cut(s) 366, 498, 697
TauI GCSGC 2 cut(s) 110, 222
TfiI GAWTC 3 cut(s) 269, 1514, 1702
Tru1I TTAA 5 cut(s) 354, 711, 1094, 1766, 1869
Tru9I TTAA 5 cut(s) 354, 711, 1094, 1766, 1869
TscAI CASTG 3 cut(s) 889, 1573, 1579
TseFI GTSAC 2 cut(s) 596, 1204
TseI GCWGC 5 cut(s) 388, 842, 1444, 1628, 1666
Tsp45I GTSAC 2 cut(s) 596, 1204
TspDTI ATGAA 6 cut(s) 749, 768, 1362, 1527, 1638, 1808
TspGWI ACGGA 1 cut(s) 1223
TspRI CASTG 3 cut(s) 889, 1573, 1579
Vha464I CTTAAG 1 cut(s) 1868
VpaK11BI GGWCC 3 cut(s) 1067, 1289, 1823
XagI CCTNNNNNAGG 1 cut(s) 1712
XapI RAATTY 2 cut(s) 707, 1581
XceI RCATGY 1 cut(s) 1127
XcmI CCANNNNNNNNNTGG 3 cut(s) 805, 811, 1161
XspI CTAG 2 cut(s) 453, 1041
ZrmI AGTACT 1 cut(s) 368
Zsp2I ATGCAT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.