AT3G27300

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
10083009 .. 10086798
3790 bp
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UTR
Exon/CDS
Intron
AT3G27300.1

Sequence Viewer

Length: 1551 bp
ATGGGTTCTGGTCAATGGCATATGGAGAAGAGGTCTACTTTAAAGAATGATTCGTTTGTAAAAGAATACAATCCAGTCACGGAAACTGGGAGTCTCTCTATCATTGTTCTTGGTGCTTCTGGTGATCTTGCTAAGAAGAAGACTTTTCCTGCACTTTTCAATCTATTTCATCAGGGATTTCTTAATCCAGATGAAGTTCATATATTTGGATATGCAAGGAGTAAGATTACTGATGAGGAGCTTAGAGATAAAATCCGCGGATATCTTGTTGATGAGAAGAATGCATCTAAGAAAACAGAAGCTTTGTCCAAGTTTCTAAAGCTGATTAAGTATGTGAGTGGACCTTATGATTCTGAGGAAGGGTTTAAGAGATTAGACAAGGCGATTTTGGAGCACGAGATATCTAAAAAGACTGCTGAAGGATCTTCGAGGAGATTGTTTTATCTTGCACTTCCTCCGTCTGTATACCCTCCTGTAAGCAAGATGATCAAGGCATGGTGCACTAACAAATCTGATCTTGGTGGATGGACTAGGATTGTTGTTGAGAAACCATTTGGAAAGGATTTGGAATCTGCAGAGCAGCTGAGTTCTCAGATTGGAGCCTTGTTTGAAGAACCACAGATTTATCGTATTGATCACTATCTGGGAAAAGAGTTAGTTCAAAACATGTTGGTTCTTCGGTTTGCCAATCGCTTGTTTTTGCCACTATGGAACCGCGACAATATTGCAAACGTACAGATCGTTTTCAGAGAAGATTTTGGAACTGAAGGTCGCGGTGGATATTTTGATGAATACGGAATCATTCGTGATATTATTCAAAACCACTTGCTCCAGGTTCTTTGCCTTGTCGCCATGGAGAAACCAATCTCTCTTAAACCCGAGCACATCCGGGATGAGAAAGTGAAGGTTCTTCAATCTGTGATTCCCATAAAAGATGAAGAGGTGGTTCTTGGACAATATGAAGGATATAGAGATGATCCAACTGTTCCAAATGACTCAAACACTCCAACGTTTGCCACAACAATTCTTCGCATTAACAATGAAAGATGGGAAGGTGTTCCTTTTATACTGAAGGCCGGAAAGGCAATGAGTTCAAAGAAGGCAGATATTCGCATTCAGTTTAAAGATGTTCCTGGCGACATATTCAAATGTCAAAACCAAGGGAGGAACGAGTTTGTTATACGCTTGCAGCCTTCAGAGGCCATGTACATGAAGCTAACTGTGAAGCAACCGGGTCTGGAGATGCAAACCGTGCAGAGTGAACTAGACCTATCGTACAAGCAGCGTTACCAAGATGTCTCAATTCCAGAGGCTTACGAACGCCTTATTCTTGACACAATCAGAGGCGACCAACAACACTTTGTTCGCAGAGACGAATTAAAGGCAGCTTGGGAAATCTTCACTCCACTGCTTCACAGGATCGACAAGGGAGAAGTGAAATCGGTCCCATACAAACAAGGTAGCCGTGGCCCAGCGGAAGCAGATCAGCTACTTAAGAAAGCTGGTTATATGCAGACTCATGGCTACATTTGGATCCCTCCTACATTGTAA

Protein Analysis

516

Amino Acids

59.16

Weight (kDa)

8.38

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G6PD_N PF00479 35 - 222 1.8e-59 Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C PF02781 224 - 503 1.8e-112 Glucose-6-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 35, 465
AccII CGCG 3 cut(s) 258, 717, 774
AciI CCGC 5 cut(s) 256, 258, 715, 774, 1475
AclI AACGTT 1 cut(s) 1010
AclWI GGATC 5 cut(s) 430, 971, 1427, 1528, 1541
AcuI CTGAAG 4 cut(s) 438, 786, 1091, 1179
AfaI GTAC 3 cut(s) 735, 1208, 1277
AflII CTTAAG 1 cut(s) 1493
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 7 cut(s) 160, 611, 662, 818, 914, 1095, 1147
AjnI CCWGG 2 cut(s) 831, 1132
AluBI AGCT 8 cut(s) 241, 302, 322, 583, 1216, 1388, 1489, 1502
AluI AGCT 8 cut(s) 241, 302, 322, 583, 1216, 1388, 1489, 1502
Alw21I GWGCWC 3 cut(s) 396, 503, 885
Alw26I GTCTC 3 cut(s) 98, 1303, 1365
Alw44I GTGCAC 1 cut(s) 499
AlwI GGATC 5 cut(s) 430, 971, 1427, 1528, 1541
Ama87I CYCGRG 1 cut(s) 878
AoxI GGCC 3 cut(s) 1074, 1200, 1468
ApaLI GTGCAC 1 cut(s) 499
ApeKI GCWGC 4 cut(s) 580, 1189, 1282, 1385
Asp700I GAANNNNTTC 1 cut(s) 1056
AspS9I GGNCC 3 cut(s) 341, 1444, 1469
AsuC2I CCSGG 2 cut(s) 890, 1233
AsuHPI GGTGA 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 878
AvaII GGWCC 2 cut(s) 341, 1444
BaeGI GKGCMC 1 cut(s) 503
BamHI GGATCC 1 cut(s) 1533
BauI CACGAG 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 3 cut(s) 396, 503, 885
BbvI GCAGC 4 cut(s) 592, 1201, 1294, 1397
BccI CCATC 2 cut(s) 519, 1041
BceAI ACGGC 1 cut(s) 1449
BcgI CGANNNNNNTGC 2 cut(s) 707, 741
BciT130I CCWGG 2 cut(s) 833, 1134
BclI TGATCA 2 cut(s) 486, 634
BcnI CCSGG 2 cut(s) 890, 1233
BcoDI GTCTC 3 cut(s) 98, 1303, 1365
BfaI CTAG 2 cut(s) 531, 1265
BfmI CTRYAG 1 cut(s) 573
BfrI CTTAAG 1 cut(s) 1493
BglI GCCNNNNNGGC 1 cut(s) 1082
BisI GCNGC 4 cut(s) 581, 1190, 1283, 1386
BlsI GCNGC 4 cut(s) 582, 1191, 1284, 1387
Bme1390I CCNGG 4 cut(s) 833, 890, 1134, 1233
Bme18I GGWCC 2 cut(s) 341, 1444
BmeT110I CYCGRG 1 cut(s) 878
BmgT120I GGNCC 3 cut(s) 341, 1444, 1469
BmiI GGNNCC 4 cut(s) 601, 713, 1446, 1535
BmrFI CCNGG 4 cut(s) 833, 890, 1134, 1233
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 2 cut(s) 293, 1233
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 146
BpmI CTGGAG 2 cut(s) 815, 1259
BpuMI CCSGG 2 cut(s) 890, 1233
BsaBI GATNNNNATC 1 cut(s) 639
BsaJI CCNNGG 4 cut(s) 256, 852, 1159, 1465
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bse1I ACTGG 2 cut(s) 74, 91
Bse3DI GCAATG 1 cut(s) 1092
Bse8I GATNNNNATC 1 cut(s) 639
BseBI CCWGG 2 cut(s) 833, 1134
BseDI CCNNGG 4 cut(s) 256, 852, 1159, 1465
BseGI GGATG 3 cut(s) 530, 885, 898
BseJI GATNNNNATC 1 cut(s) 639
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 3 cut(s) 345, 575, 605
BseNI ACTGG 2 cut(s) 74, 91
BseRI GAGGAG 2 cut(s) 251, 445
BseSI GKGCMC 1 cut(s) 503
BseXI GCAGC 4 cut(s) 592, 1201, 1294, 1397
BseYI CCCAGC 1 cut(s) 1471
BsgI GTGCAG 2 cut(s) 135, 1274
Bsh1236I CGCG 3 cut(s) 258, 717, 774
BshFI GGCC 3 cut(s) 1076, 1202, 1470
BsiHKAI GWGCWC 3 cut(s) 396, 503, 885
BsiHKCI CYCGRG 1 cut(s) 878
BsiSI CCGG 3 cut(s) 889, 1077, 1232
BslFI GGGAC 1 cut(s) 1430
BsmAI GTCTC 3 cut(s) 98, 1303, 1365
BsmBI CGTCTC 1 cut(s) 1365
BsmFI GGGAC 1 cut(s) 1430
BsmI GAATGC 2 cut(s) 286, 1113
BsnI GGCC 3 cut(s) 1076, 1202, 1470
BsoBI CYCGRG 1 cut(s) 878
Bsp1286I GDGCHC 3 cut(s) 396, 503, 885
Bsp1407I TGTACA 1 cut(s) 1206
Bsp19I CCATGG 1 cut(s) 852
BspACI CCGC 5 cut(s) 256, 258, 715, 774, 1475
BspANI GGCC 3 cut(s) 1076, 1202, 1470
BspCNI CTCAG 3 cut(s) 346, 576, 604
BspFNI CGCG 3 cut(s) 258, 717, 774
BspLI GGNNCC 4 cut(s) 601, 713, 1446, 1535
BspMAI CTGCAG 1 cut(s) 577
BspPI GGATC 5 cut(s) 430, 971, 1427, 1528, 1541
BspTI CTTAAG 1 cut(s) 1493
BsrDI GCAATG 1 cut(s) 1092
BsrGI TGTACA 1 cut(s) 1206
BsrI ACTGG 2 cut(s) 74, 91
BssECI CCNNGG 4 cut(s) 256, 852, 1159, 1465
BssNAI GTATAC 1 cut(s) 466
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 2 cut(s) 852, 1159
Bst1107I GTATAC 1 cut(s) 466
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 2 cut(s) 833, 1134
Bst4CI ACNGT 3 cut(s) 985, 1222, 1252
Bst6I CTCTTC 2 cut(s) 23, 933
BstAFI CTTAAG 1 cut(s) 1493
BstAPI GCANNNNNTGC 1 cut(s) 1252
BstAUI TGTACA 1 cut(s) 1206
BstC8I GCNNGC 1 cut(s) 1187
BstDEI CTNAG 6 cut(s) 132, 242, 288, 354, 584, 591
BstDSI CCRYGG 3 cut(s) 256, 852, 1465
BstF5I GGATG 3 cut(s) 530, 885, 898
BstFNI CGCG 3 cut(s) 258, 717, 774
BstMAI GTCTC 3 cut(s) 98, 1303, 1365
BstMWI GCNNNNNNNGC 2 cut(s) 1082, 1252
BstNI CCWGG 2 cut(s) 833, 1134
BstNSI RCATGY 1 cut(s) 670
BstSCI CCNGG 4 cut(s) 831, 888, 1132, 1231
BstSFI CTRYAG 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 503
BstUI CGCG 3 cut(s) 258, 717, 774
BstV1I GCAGC 4 cut(s) 592, 1201, 1294, 1397
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 2 cut(s) 422, 1533
BstYI RGATCY 2 cut(s) 422, 1533
BstZ17I GTATAC 1 cut(s) 466
BsuRI GGCC 3 cut(s) 1076, 1202, 1470
BtgI CCRYGG 3 cut(s) 256, 852, 1465
BtsCI GGATG 3 cut(s) 530, 885, 898
BtsI GCAGTG 1 cut(s) 1406
BtsIMutI CAGTG 1 cut(s) 1406
Cac8I GCNNGC 1 cut(s) 1187
Cfr13I GGNCC 3 cut(s) 341, 1444, 1469
Cfr42I CCGCGG 1 cut(s) 259
Csp6I GTAC 3 cut(s) 734, 1207, 1276
CviAII CATG 6 cut(s) 495, 667, 853, 1204, 1210, 1520
CviQI GTAC 3 cut(s) 734, 1207, 1276
DdeI CTNAG 6 cut(s) 132, 242, 288, 354, 584, 591
DraI TTTAAA 2 cut(s) 42, 1123
Eam1104I CTCTTC 2 cut(s) 23, 933
EarI CTCTTC 2 cut(s) 23, 933
Eco130I CCWWGG 2 cut(s) 852, 1159
Eco32I GATATC 2 cut(s) 263, 402
Eco47I GGWCC 2 cut(s) 341, 1444
Eco57I CTGAAG 4 cut(s) 438, 786, 1091, 1179
Eco88I CYCGRG 1 cut(s) 878
EcoRII CCWGG 2 cut(s) 831, 1132
EcoRV GATATC 2 cut(s) 263, 402
EcoT14I CCWWGG 2 cut(s) 852, 1159
EcoT22I ATGCAT 1 cut(s) 286
ErhI CCWWGG 2 cut(s) 852, 1159
Esp3I CGTCTC 1 cut(s) 1365
FaeI CATG 6 cut(s) 498, 670, 856, 1207, 1213, 1523
FaqI GGGAC 1 cut(s) 1430
FatI CATG 6 cut(s) 494, 666, 852, 1203, 1209, 1519
FauNDI CATATG 1 cut(s) 21
FbaI TGATCA 2 cut(s) 486, 634
FblI GTMKAC 2 cut(s) 35, 465
Fnu4HI GCNGC 4 cut(s) 581, 1190, 1283, 1386
FokI GGATG 3 cut(s) 537, 872, 905
Fsp4HI GCNGC 4 cut(s) 581, 1190, 1283, 1386
FspBI CTAG 2 cut(s) 531, 1265
GluI GCNGC 4 cut(s) 581, 1190, 1283, 1386
GsaI CCCAGC 1 cut(s) 1475
GsuI CTGGAG 2 cut(s) 815, 1259
HaeIII GGCC 3 cut(s) 1076, 1202, 1470
HapII CCGG 3 cut(s) 889, 1077, 1232
Hin1II CATG 6 cut(s) 498, 670, 856, 1207, 1213, 1523
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 8 cut(s) 50, 91, 350, 569, 798, 922, 995, 1516
HpaII CCGG 3 cut(s) 889, 1077, 1232
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 5 cut(s) 36, 341, 466, 501, 1262
Hpy188I TCNGA 6 cut(s) 355, 514, 594, 749, 1198, 1343
Hpy188III TCNNGA 5 cut(s) 188, 806, 1238, 1307, 1331
Hpy8I GTNNAC 5 cut(s) 36, 341, 466, 501, 1262
HpyAV CCTTC 9 cut(s) 353, 413, 761, 898, 956, 1046, 1066, 1093, 1203
HpyCH4III ACNGT 3 cut(s) 985, 1222, 1252
HpyCH4IV ACGT 2 cut(s) 732, 1010
HpyF10VI GCNNNNNNNGC 2 cut(s) 1082, 1252
HpyF3I CTNAG 6 cut(s) 132, 242, 288, 354, 584, 591
HpySE526I ACGT 2 cut(s) 732, 1010
Hsp92II CATG 6 cut(s) 498, 670, 856, 1207, 1213, 1523
Ksp22I TGATCA 2 cut(s) 486, 634
KspI CCGCGG 1 cut(s) 259
LmnI GCTCC 4 cut(s) 238, 391, 599, 834
Lsp1109I GCAGC 4 cut(s) 592, 1201, 1294, 1397
LweI GCATC 2 cut(s) 293, 1233
MaeI CTAG 2 cut(s) 531, 1265
MaeII ACGT 2 cut(s) 732, 1010
MaeIII GTNAC 2 cut(s) 76, 1286
MflI RGATCY 2 cut(s) 422, 1533
MhlI GDGCHC 3 cut(s) 396, 503, 885
MluCI AATT 3 cut(s) 1023, 1302, 1376
MlyI GAGTC 3 cut(s) 100, 989, 1510
MmeI TCCRAC 2 cut(s) 1004, 1031
Mph1103I ATGCAT 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 1056
MseI TTAA 9 cut(s) 41, 183, 327, 366, 873, 1035, 1122, 1379, 1494
MslI CAYNNNNRTG 1 cut(s) 1208
MspA1I CMGCKG 3 cut(s) 258, 583, 1475
MspCI CTTAAG 1 cut(s) 1493
MspI CCGG 3 cut(s) 889, 1077, 1232
MspR9I CCNGG 4 cut(s) 833, 890, 1134, 1233
Mva1269I GAATGC 2 cut(s) 286, 1113
MvaI CCWGG 2 cut(s) 833, 1134
MvnI CGCG 3 cut(s) 258, 717, 774
MwoI GCNNNNNNNGC 2 cut(s) 1082, 1252
NciI CCSGG 2 cut(s) 890, 1233
NcoI CCATGG 1 cut(s) 852
NdeI CATATG 1 cut(s) 21
NlaIII CATG 6 cut(s) 498, 670, 856, 1207, 1213, 1523
NlaIV GGNNCC 4 cut(s) 601, 713, 1446, 1535
NmuCI GTSAC 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 286
NspI RCATGY 1 cut(s) 670
PciI ACATGT 1 cut(s) 666
PcsI WCGNNNNNNNCGW 1 cut(s) 738
PctI GAATGC 2 cut(s) 286, 1113
PdmI GAANNNNTTC 1 cut(s) 1056
PfeI GAWTC 5 cut(s) 50, 350, 569, 798, 922
PfoI TCCNGGA 1 cut(s) 888
PkrI GCNGC 4 cut(s) 582, 1191, 1284, 1387
PleI GAGTC 3 cut(s) 99, 989, 1510
PpsI GAGTC 3 cut(s) 99, 989, 1510
PscI ACATGT 1 cut(s) 666
Psp1406I AACGTT 1 cut(s) 1010
Psp6I CCWGG 2 cut(s) 831, 1132
PspFI CCCAGC 1 cut(s) 1471
PspGI CCWGG 2 cut(s) 831, 1132
PspN4I GGNNCC 4 cut(s) 601, 713, 1446, 1535
PspPI GGNCC 3 cut(s) 341, 1444, 1469
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 2 cut(s) 422, 1533
PvuII CAGCTG 1 cut(s) 583
RsaI GTAC 3 cut(s) 735, 1208, 1277
RsaNI GTAC 3 cut(s) 734, 1207, 1276
RseI CAYNNNNRTG 1 cut(s) 1208
SacII CCGCGG 1 cut(s) 259
SaqAI TTAA 9 cut(s) 41, 183, 327, 366, 873, 1035, 1122, 1379, 1494
SatI GCNGC 4 cut(s) 581, 1190, 1283, 1386
Sau96I GGNCC 3 cut(s) 341, 1444, 1469
SchI GAGTC 3 cut(s) 100, 989, 1510
ScrFI CCNGG 4 cut(s) 833, 890, 1134, 1233
SduI GDGCHC 3 cut(s) 396, 503, 885
SfaNI GCATC 2 cut(s) 293, 1233
SfcI CTRYAG 1 cut(s) 573
Sfr303I CCGCGG 1 cut(s) 259
SgrBI CCGCGG 1 cut(s) 259
SinI GGWCC 2 cut(s) 341, 1444
SmiMI CAYNNNNRTG 1 cut(s) 1208
SmlI CTYRAG 1 cut(s) 1493
SmoI CTYRAG 1 cut(s) 1493
Sse9I AATT 3 cut(s) 1023, 1302, 1376
SsiI CCGC 5 cut(s) 256, 258, 715, 774, 1475
SspI AATATT 1 cut(s) 724
SspMI CTAG 2 cut(s) 531, 1265
StyD4I CCNGG 4 cut(s) 831, 888, 1132, 1231
StyI CCWWGG 2 cut(s) 852, 1159
TaaI ACNGT 3 cut(s) 985, 1222, 1252
TaiI ACGT 2 cut(s) 735, 1013
TaqI TCGA 2 cut(s) 428, 1422
TaqII GACCGA 1 cut(s) 1432
TasI AATT 3 cut(s) 1023, 1302, 1376
TatI WGTACW 1 cut(s) 1206
TfiI GAWTC 5 cut(s) 50, 350, 569, 798, 922
Tru1I TTAA 9 cut(s) 41, 183, 327, 366, 873, 1035, 1122, 1379, 1494
Tru9I TTAA 9 cut(s) 41, 183, 327, 366, 873, 1035, 1122, 1379, 1494
TscAI CASTG 1 cut(s) 1413
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 4 cut(s) 580, 1189, 1282, 1385
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 8 cut(s) 158, 188, 207, 804, 951, 975, 1056, 1226
TspGWI ACGGA 3 cut(s) 95, 447, 810
TspRI CASTG 1 cut(s) 1413
Vha464I CTTAAG 1 cut(s) 1493
VneI GTGCAC 1 cut(s) 499
VpaK11BI GGWCC 2 cut(s) 341, 1444
XceI RCATGY 1 cut(s) 670
XmiI GTMKAC 2 cut(s) 35, 465
XmnI GAANNNNTTC 1 cut(s) 1056
XspI CTAG 2 cut(s) 531, 1265
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.