MD17G1017900.v1.1

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
1402474 .. 1407300
4827 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1017900.v1.1.491

Sequence Viewer

Length: 1551 bp
ATGGGATCGGGATCATGGCACATGGAGAAAAGAGACAGCTTCCGGGTCGAACCCGTTAGAGACATTGATAATGTGCTTGAAAATGGGTCTCTCTCGATTATCGTGCTTGGCGCTTCCGGTGATCTTGCCAAGAAGAAGACTTTTCCGGCACTCTTCAACCTTTATCGGCAGGGATTTCTGCTACCAGAAGAAGTTCACATTTTTGGATATGCGAGGACTAAGATTTCTGATGATGAGCTAAGAAACCGCATACGTGGGTATCTTGTCAGTGACAAAGGAGCTTCGCCCAAGGACGTGGAGAATGTAACCAATTTTTTGCAACTGATCAAATATGTTAGTGGTTCTTATGATGGTGAGGAAGGATTTCGCCTGCTTGATAAGGAAATTTCAGATAATGAAATCTCAAAGAATAGTGCGGAAGGATCATCCCGCAGGCTCTTTTATCTTGCACTTCCTCCATCAGTATACCCCTCTGTCTGCAGGATGATCAGGCATTATTGCATGAATAGATCTGATCTTGGTGGATGGACTCGTATTGTTGTTGAGAAGCCATTTGGCAAGGATTTGGACTCTGCAGAACAACTCAGTAACCAGATCGGGGAGTTGTTCGAGGAATCACAAATTTACCGTATCGATCACTATCTGGGGAAGGAATTGGTGCAGAATCTGTTAGTACTCCGTTTTGCAAATCGATTCTTTTTGCCCCTTTGGAACCGAGACAACATTGAGAATGTACAGATTGTGTTTAGGGAGGATTTTGGAACTGAAGGTCGAGGTGGATACTTTGATGAATATGGAATTATCCGCGATATTATTCAAAATCATCTCTTGCAGGTTCTATGCTTGGTTGCCATGGAAAAACCTATTTCCCTAAAACCTGAGCACATACGGGACGAGAAAGTAAAGGTTCTTCAATCAGTGATGCCAATTAAGGATGATGAAGTTGTTCTTGGACAATATGATGGCTACACAGACGATCCAACTGTTCCTGACCACTCTAACACTCCAACCTTTTCAACCGTGATTCTGCGAATCCACAATGAAAGATGGGAAGGTGTTCCTTTTATACTAAAGGCCGGGAAAGCATTAAATTCAAGAAAGGCAGAAATAAGAGTTCAATTTAAGGATGTTCCTGGTGACATATTCAAATGTAAGAAGCAAGGGAGGAATGAGTTTGTAATACGCTTGCAACCTTCAGAAGCTATGTACATGAAACTTACGGTGAAGCAGCCTGGACTGGAGATGTCAACTGTCCAAAGTGAATTAGACTTGTCATACGGGCAACGTTATCAAGGGGTAACTATCCCGGAGGCTTATGAACGTCTAATTCTTGACACAATAAGAGGTGATCAACAACATTTTGTACGAAGAGACGAGTTGAAGGCGGCGTGGGAAATCTTCACCCCTCTTCTGCACAGGATTGACAATGGTGAGGTAAAGCCGCTTCCATACCAGCCAGGCAGTCGGGGTCCTGCAGAAGCGGATGCACTGCTAGAAAAAGCTGGCTACGTACAAACACATGGCTACATATGGATCCCTCCTACCTTGTAG

Protein Analysis

517

Amino Acids

59.12

Weight (kDa)

5.88

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G6PD_N PF00479 34 - 222 7.5e-60 Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C PF02781 224 - 503 2.8e-111 Glucose-6-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 823
AccI GTMKAC 1 cut(s) 465
AccII CGCG 1 cut(s) 807
AciI CCGC 7 cut(s) 247, 416, 430, 805, 1385, 1442, 1481
AclI AACGTT 1 cut(s) 1285
AclWI GGATC 6 cut(s) 13, 19, 430, 971, 1528, 1541
AcsI RAATTY 3 cut(s) 384, 621, 1090
AcuI CTGAAG 2 cut(s) 786, 1179
AfaI GTAC 5 cut(s) 675, 735, 1208, 1365, 1512
AfiI CCNNNNNNNGG 1 cut(s) 598
AgsI TTSAA 9 cut(s) 80, 157, 818, 914, 1017, 1095, 1118, 1147, 1381
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 3 cut(s) 1132, 1231, 1456
AjuI GAANNNNNNNTTGG 2 cut(s) 933, 965
AluBI AGCT 5 cut(s) 39, 238, 281, 1202, 1502
AluI AGCT 5 cut(s) 39, 238, 281, 1202, 1502
Alw21I GWGCWC 1 cut(s) 885
Alw26I GTCTC 5 cut(s) 27, 54, 93, 711, 1365
AlwI GGATC 6 cut(s) 13, 19, 430, 971, 1528, 1541
AlwNI CAGNNNCTG 1 cut(s) 667
AoxI GGCC 1 cut(s) 1074
ApeKI GCWGC 1 cut(s) 1228
ApoI RAATTY 3 cut(s) 384, 621, 1090
Asp700I GAANNNNTTC 4 cut(s) 192, 363, 945, 1056
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 1469
AsuC2I CCSGG 3 cut(s) 44, 1078, 1307
AsuHPI GGTGA 7 cut(s) 131, 365, 1148, 1234, 1358, 1393, 1442
AvaII GGWCC 1 cut(s) 1469
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
BamHI GGATCC 1 cut(s) 1533
BarI GAAGNNNNNNTAC 4 cut(s) 894, 926, 1428, 1460
BbsI GAAGAC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 885
BbvI GCAGC 1 cut(s) 1240
BccI CCATC 5 cut(s) 344, 466, 519, 956, 1041
BcgI CGANNNNNNTGC 2 cut(s) 85, 119
BciT130I CCWGG 3 cut(s) 1134, 1233, 1458
BciVI GTATCC 1 cut(s) 773
BclI TGATCA 3 cut(s) 324, 486, 1348
BcnI CCSGG 3 cut(s) 44, 1078, 1307
BcoDI GTCTC 5 cut(s) 27, 54, 93, 711, 1365
BfaI CTAG 1 cut(s) 1493
BfmI CTRYAG 3 cut(s) 478, 573, 1473
BfoI RGCGCY 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 823
BfuI GTATCC 1 cut(s) 773
BglII AGATCT 1 cut(s) 509
BisI GCNGC 3 cut(s) 1229, 1386, 1442
BlsI GCNGC 3 cut(s) 1230, 1387, 1443
BmcAI AGTACT 1 cut(s) 675
Bme1390I CCNGG 6 cut(s) 44, 1078, 1134, 1233, 1307, 1458
Bme18I GGWCC 1 cut(s) 1469
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 1469
BmiI GGNNCC 3 cut(s) 713, 1470, 1535
BmrFI CCNGG 6 cut(s) 44, 1078, 1134, 1233, 1307, 1458
BmsI GCATC 2 cut(s) 912, 1474
BpiI GAAGAC 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 1259
Bpu10I CCTNAGC 1 cut(s) 879
BpuMI CCSGG 3 cut(s) 44, 1078, 1307
Bsa29I ATCGAT 2 cut(s) 633, 691
BsaAI YACGTR 2 cut(s) 254, 1510
BsaBI GATNNNNATC 2 cut(s) 10, 639
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 288, 852
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 598
Bse1I ACTGG 1 cut(s) 1242
Bse8I GATNNNNATC 2 cut(s) 10, 639
BseBI CCWGG 3 cut(s) 1134, 1233, 1458
BseCI ATCGAT 2 cut(s) 633, 691
BseDI CCNNGG 2 cut(s) 288, 852
BseGI GGATG 6 cut(s) 425, 489, 530, 940, 1132, 1489
BseJI GATNNNNATC 2 cut(s) 10, 639
BseLI CCNNNNNNNGG 1 cut(s) 598
BseMII CTCAG 2 cut(s) 598, 870
BseNI ACTGG 1 cut(s) 1242
BseXI GCAGC 1 cut(s) 1240
BsgI GTGCAG 2 cut(s) 680, 1397
Bsh1236I CGCG 1 cut(s) 807
BshFI GGCC 1 cut(s) 1076
BshVI ATCGAT 2 cut(s) 633, 691
BsiHKAI GWGCWC 1 cut(s) 885
BsiSI CCGG 5 cut(s) 43, 117, 146, 1077, 1307
BslFI GGGAC 1 cut(s) 905
BslI CCNNNNNNNGG 1 cut(s) 598
BsmAI GTCTC 5 cut(s) 27, 54, 93, 711, 1365
BsmBI CGTCTC 1 cut(s) 1365
BsmFI GGGAC 1 cut(s) 905
BsnI GGCC 1 cut(s) 1076
Bso31I GGTCTC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 885
Bsp1407I TGTACA 2 cut(s) 733, 1206
Bsp19I CCATGG 1 cut(s) 852
BspACI CCGC 7 cut(s) 247, 416, 430, 805, 1385, 1442, 1481
BspANI GGCC 1 cut(s) 1076
BspCNI CTCAG 2 cut(s) 597, 871
BspDI ATCGAT 2 cut(s) 633, 691
BspFNI CGCG 1 cut(s) 807
BspLI GGNNCC 3 cut(s) 713, 1470, 1535
BspMAI CTGCAG 3 cut(s) 482, 577, 1477
BspMI ACCTGC 1 cut(s) 823
BspPI GGATC 6 cut(s) 13, 19, 430, 971, 1528, 1541
BspTNI GGTCTC 1 cut(s) 93
BsrGI TGTACA 2 cut(s) 733, 1206
BsrI ACTGG 1 cut(s) 1242
BssECI CCNNGG 2 cut(s) 288, 852
BssNAI GTATAC 1 cut(s) 466
BssT1I CCWWGG 2 cut(s) 288, 852
Bst1107I GTATAC 1 cut(s) 466
Bst2UI CCWGG 3 cut(s) 1134, 1233, 1458
Bst4CI ACNGT 5 cut(s) 629, 985, 1021, 1222, 1252
Bst6I CTCTTC 3 cut(s) 158, 1363, 1413
BstAUI TGTACA 2 cut(s) 733, 1206
BstBAI YACGTR 2 cut(s) 254, 1510
BstC8I GCNNGC 4 cut(s) 371, 434, 1187, 1504
BstDEI CTNAG 4 cut(s) 219, 239, 584, 879
BstDSI CCRYGG 1 cut(s) 852
BstF5I GGATG 6 cut(s) 425, 489, 530, 940, 1132, 1489
BstFNI CGCG 1 cut(s) 807
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstMAI GTCTC 5 cut(s) 27, 54, 93, 711, 1365
BstMWI GCNNNNNNNGC 1 cut(s) 1082
BstNI CCWGG 3 cut(s) 1134, 1233, 1458
BstSCI CCNGG 6 cut(s) 42, 1076, 1132, 1231, 1305, 1456
BstSFI CTRYAG 3 cut(s) 478, 573, 1473
BstSNI TACGTA 1 cut(s) 1510
BstUI CGCG 1 cut(s) 807
BstV1I GCAGC 1 cut(s) 1240
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 509, 1533
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 2 cut(s) 509, 1533
BstZ17I GTATAC 1 cut(s) 466
Bsu15I ATCGAT 2 cut(s) 633, 691
BsuI GTATCC 1 cut(s) 773
BsuRI GGCC 1 cut(s) 1076
BsuTUI ATCGAT 2 cut(s) 633, 691
BtgI CCRYGG 1 cut(s) 852
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 6 cut(s) 425, 489, 530, 940, 1132, 1489
BtsI GCAGTG 1 cut(s) 1487
BtsIMutI CAGTG 3 cut(s) 274, 924, 1487
BveI ACCTGC 1 cut(s) 823
Cac8I GCNNGC 4 cut(s) 371, 434, 1187, 1504
CaiI CAGNNNCTG 1 cut(s) 667
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 1469
ClaI ATCGAT 2 cut(s) 633, 691
Csp6I GTAC 5 cut(s) 674, 734, 1207, 1364, 1511
CviAII CATG 6 cut(s) 15, 22, 502, 853, 1210, 1520
CviQI GTAC 5 cut(s) 674, 734, 1207, 1364, 1511
DdeI CTNAG 4 cut(s) 219, 239, 584, 879
Eam1104I CTCTTC 3 cut(s) 158, 1363, 1413
EarI CTCTTC 3 cut(s) 158, 1363, 1413
Eco105I TACGTA 1 cut(s) 1510
Eco130I CCWWGG 2 cut(s) 288, 852
Eco31I GGTCTC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 1469
Eco57I CTGAAG 2 cut(s) 786, 1179
EcoO109I RGGNCCY 1 cut(s) 1469
EcoRII CCWGG 3 cut(s) 1132, 1231, 1456
EcoT14I CCWWGG 2 cut(s) 288, 852
ErhI CCWWGG 2 cut(s) 288, 852
Esp3I CGTCTC 1 cut(s) 1365
FaeI CATG 6 cut(s) 18, 25, 505, 856, 1213, 1523
FalI AAGNNNNNCTT 2 cut(s) 933, 965
FaqI GGGAC 1 cut(s) 905
FatI CATG 6 cut(s) 14, 21, 501, 852, 1209, 1519
FauI CCCGC 1 cut(s) 437
FauNDI CATATG 1 cut(s) 1529
FbaI TGATCA 3 cut(s) 324, 486, 1348
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 3 cut(s) 1229, 1386, 1442
FokI GGATG 6 cut(s) 412, 496, 537, 947, 1139, 1496
Fsp4HI GCNGC 3 cut(s) 1229, 1386, 1442
FspBI CTAG 1 cut(s) 1493
GlaI GCGC 1 cut(s) 112
GluI GCNGC 3 cut(s) 1229, 1386, 1442
GsuI CTGGAG 1 cut(s) 1259
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 1 cut(s) 1076
HapII CCGG 5 cut(s) 43, 117, 146, 1077, 1307
HhaI GCGC 1 cut(s) 113
Hin1II CATG 6 cut(s) 18, 25, 505, 856, 1213, 1523
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 1 cut(s) 1248
HindII GTYRAC 1 cut(s) 1248
HinfI GANTC 7 cut(s) 529, 569, 614, 664, 693, 1024, 1032
HpaII CCGG 5 cut(s) 43, 117, 146, 1077, 1307
HphI GGTGA 7 cut(s) 131, 365, 1148, 1234, 1358, 1393, 1442
Hpy166II GTNNAC 3 cut(s) 196, 466, 1248
Hpy188I TCNGA 4 cut(s) 229, 391, 514, 1198
Hpy188III TCNNGA 5 cut(s) 9, 94, 989, 1095, 1331
Hpy8I GTNNAC 3 cut(s) 196, 466, 1248
HpyAV CCTTC 7 cut(s) 353, 413, 643, 761, 1046, 1203, 1375
HpyCH4III ACNGT 5 cut(s) 629, 985, 1021, 1222, 1252
HpyCH4IV ACGT 5 cut(s) 253, 294, 1285, 1321, 1509
HpyF10VI GCNNNNNNNGC 1 cut(s) 1082
HpyF3I CTNAG 4 cut(s) 219, 239, 584, 879
HpySE526I ACGT 5 cut(s) 253, 294, 1285, 1321, 1509
Hsp92II CATG 6 cut(s) 18, 25, 505, 856, 1213, 1523
HspAI GCGC 1 cut(s) 111
Ksp22I TGATCA 3 cut(s) 324, 486, 1348
LmnI GCTCC 1 cut(s) 278
Lsp1109I GCAGC 1 cut(s) 1240
LweI GCATC 2 cut(s) 912, 1474
MaeI CTAG 1 cut(s) 1493
MaeII ACGT 5 cut(s) 253, 294, 1285, 1321, 1509
MaeIII GTNAC 5 cut(s) 269, 304, 587, 1136, 1297
MboII GAAGA 8 cut(s) 145, 145, 148, 200, 902, 1380, 1390, 1400
MflI RGATCY 2 cut(s) 509, 1533
MhlI GDGCHC 1 cut(s) 885
MlyI GAGTC 2 cut(s) 523, 563
MmeI TCCRAC 2 cut(s) 1004, 1031
MroXI GAANNNNTTC 4 cut(s) 192, 363, 945, 1056
MseI TTAA 3 cut(s) 930, 1088, 1122
MspI CCGG 5 cut(s) 43, 117, 146, 1077, 1307
MspR9I CCNGG 6 cut(s) 44, 1078, 1134, 1233, 1307, 1458
MvaI CCWGG 3 cut(s) 1134, 1233, 1458
MvnI CGCG 1 cut(s) 807
MwoI GCNNNNNNNGC 1 cut(s) 1082
NciI CCSGG 3 cut(s) 44, 1078, 1307
NcoI CCATGG 1 cut(s) 852
NdeI CATATG 1 cut(s) 1529
NlaIII CATG 6 cut(s) 18, 25, 505, 856, 1213, 1523
NlaIV GGNNCC 3 cut(s) 713, 1470, 1535
NmuCI GTSAC 2 cut(s) 269, 1136
PdmI GAANNNNTTC 4 cut(s) 192, 363, 945, 1056
PfeI GAWTC 5 cut(s) 614, 664, 693, 1024, 1032
PfoI TCCNGGA 1 cut(s) 1305
PkrI GCNGC 3 cut(s) 1230, 1387, 1443
PleI GAGTC 2 cut(s) 523, 563
PpsI GAGTC 2 cut(s) 523, 563
Ppu21I YACGTR 2 cut(s) 254, 1510
PpuMI RGGWCCY 1 cut(s) 1469
Psp1406I AACGTT 1 cut(s) 1285
Psp5II RGGWCCY 1 cut(s) 1469
Psp6I CCWGG 3 cut(s) 1132, 1231, 1456
PspGI CCWGG 3 cut(s) 1132, 1231, 1456
PspN4I GGNNCC 3 cut(s) 713, 1470, 1535
PspPI GGNCC 1 cut(s) 1469
PspPPI RGGWCCY 1 cut(s) 1469
PstI CTGCAG 3 cut(s) 482, 577, 1477
PstNI CAGNNNCTG 1 cut(s) 667
PsuI RGATCY 2 cut(s) 509, 1533
RsaI GTAC 5 cut(s) 675, 735, 1208, 1365, 1512
RsaNI GTAC 5 cut(s) 674, 734, 1207, 1364, 1511
SaqAI TTAA 3 cut(s) 930, 1088, 1122
SatI GCNGC 3 cut(s) 1229, 1386, 1442
Sau96I GGNCC 1 cut(s) 1469
ScaI AGTACT 1 cut(s) 675
SchI GAGTC 2 cut(s) 523, 563
ScrFI CCNGG 6 cut(s) 44, 1078, 1134, 1233, 1307, 1458
SduI GDGCHC 1 cut(s) 885
SfaNI GCATC 2 cut(s) 912, 1474
SfcI CTRYAG 3 cut(s) 478, 573, 1473
SinI GGWCC 1 cut(s) 1469
SnaBI TACGTA 1 cut(s) 1510
SsiI CCGC 7 cut(s) 247, 416, 430, 805, 1385, 1442, 1481
SspMI CTAG 1 cut(s) 1493
StyD4I CCNGG 6 cut(s) 42, 1076, 1132, 1231, 1305, 1456
StyI CCWWGG 2 cut(s) 288, 852
TaaI ACNGT 5 cut(s) 629, 985, 1021, 1222, 1252
TaiI ACGT 5 cut(s) 256, 297, 1288, 1324, 1512
TaqI TCGA 6 cut(s) 48, 95, 609, 633, 691, 772
TatI WGTACW 3 cut(s) 673, 733, 1206
TauI GCSGC 2 cut(s) 1388, 1444
TfiI GAWTC 5 cut(s) 614, 664, 693, 1024, 1032
Tru1I TTAA 3 cut(s) 930, 1088, 1122
Tru9I TTAA 3 cut(s) 930, 1088, 1122
TscAI CASTG 3 cut(s) 274, 924, 1494
TseFI GTSAC 2 cut(s) 269, 1136
TseI GCWGC 1 cut(s) 1228
Tsp45I GTSAC 2 cut(s) 269, 1136
TspDTI ATGAA 7 cut(s) 411, 518, 804, 954, 1056, 1226, 1332
TspGWI ACGGA 1 cut(s) 668
TspRI CASTG 3 cut(s) 274, 924, 1494
VpaK11BI GGWCC 1 cut(s) 1469
XapI RAATTY 3 cut(s) 384, 621, 1090
XmiI GTMKAC 1 cut(s) 465
XmnI GAANNNNTTC 4 cut(s) 192, 363, 945, 1056
XspI CTAG 1 cut(s) 1493
ZrmI AGTACT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.