Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0006615

Physical Location & Seq

Genomic Coordinates Reverse (-)

895081 .. 897717

Gene Structure 2637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGATCGATCACTATTTGGGGAAGGAATTGGTGCAGAATCTGTTAGTACTTCGTTTTGCAAATCGATTCTTTTTGCCCCTTTGGAACCGAGACAACATTGCGAATGTACAGATTGTGTTTAGGGAGGATTTTGGAACTGAAGGTCGTGGTGGATATTTTGATGAATATGGAATTATCCGCGATATTATTCAAAATCATCTCTTGCAGGTTCTATGCTTGGTTGCCATGGAAAAACCTATTTCCCTAAAGCCTGAGCATATACGGGACGAGAAAGTAAAGGTTCTTCAATCAGTAATGCCAATTGAGGATGATGAAGTTGTTCTTGGACAATATGATGGCTACACAGACGATCGAACTGTTCCTGACCACTCAAACACTCCAACCTTTTCAACCGTGATTCTGCGAATCCACAATGAAAGATGGGAAGGTGTTCCTTTTATACTAAAGGCTGGGAAAGCATTAAATTCAAGAAAGGCAGAAATAAGAGTTCAGTTTAAGGATGTTCCTGGTGACATATTCAAATGTAAGAAGCAAGGAAGGAATGAGTTTGTAATACGCTTGCAGCCTTCAGAAGCCATGTACATGAAACTTACGGTCAAGCAGCCTGGACTCGAGATGGCAACTGTCCAAAGTGAATTAGACTTGTCATATGGGCAACGTTATCAAGGGGTAACTATCCCGGAGGCTTATGAACGTCTAATTCTTGACACAATAAGAGGCGATCAACAACATTTTGTGCGTAGAGATGAGTTGAAGGCGGCATGGGAAATCTTCACACCGCTTCTGCACAGAATTGACAACGGTGAGTTAAAGCCGCTTCCATACCAACCAGGCAGTCGGGGTCCTGCAGAAGCGGATGCACTGCTTGAAAAAGTTGGATACGTACAAACACATGGCTACATATGGATCCCTCCTACCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

308

Amino Acids

35.43

Weight (kDa)

5.95

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27300 AT3G27300 AT3G27300 AT3G27300 AT3G27300 AT5G40760 AT5G40760
fragaria_vesca	FvH4_6g52720 FvH4_6g52720
malus_domestica	MD09G1017200.v1.1 MD17G1017900.v1.1
prunus_persica	Prupe.3G300200_v2.0.a1
pyrus_communis	pycom111g01400 pycom17g01440
rosa_chinensis	RchiOBHm_Chr2g0174331
rosa_multiflora	Rmu_co8509789.1_g000001 Rmu_sc0003649.1_g000038 Rmu_sc0007150.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078290
rosa_rugosa	Rorug02G0576200 Rorug02G0576300
rosa_samantha	Rh2AG657000 Rh2BG668000 Rh2CG631100 Rh2DG681700
rosa_wichuraiana	Rw2G053820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	196
AccII	CGCG	1 cut(s)	180
AciI	CCGC	5 cut(s)	178, 758, 779, 815, 854
AclI	AACGTT	1 cut(s)	658
AclWI	GGATC	2 cut(s)	901, 914
AcsI	RAATTY	1 cut(s)	463
AcuI	CTGAAG	2 cut(s)	159, 552
AfaI	GTAC	4 cut(s)	48, 108, 581, 885
AgsI	TTSAA	7 cut(s)	191, 287, 390, 468, 520, 754, 869
AjnI	CCWGG	3 cut(s)	505, 604, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	2 cut(s)	901, 914
AlwNI	CAGNNNCTG	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	611
ApeKI	GCWGC	2 cut(s)	562, 601
ApoI	RAATTY	1 cut(s)	463
Asp700I	GAANNNNTTC	2 cut(s)	318, 429
AspS9I	GGNCC	1 cut(s)	842
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	2 cut(s)	521, 815
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	842
BamHI	GGATCC	1 cut(s)	906
BarI	GAAGNNNNNNTAC	2 cut(s)	267, 299
BbvI	GCAGC	2 cut(s)	574, 613
BccI	CCATC	3 cut(s)	329, 414, 610
BciT130I	CCWGG	3 cut(s)	507, 606, 831
BciVI	GTATCC	1 cut(s)	872
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	846
BfuAI	ACCTGC	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	872
BisI	GCNGC	4 cut(s)	563, 602, 759, 815
BlsI	GCNGC	4 cut(s)	564, 603, 760, 816
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	4 cut(s)	507, 606, 680, 831
Bme18I	GGWCC	1 cut(s)	842
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	842
BmiI	GGNNCC	3 cut(s)	86, 843, 908
BmrFI	CCNGG	4 cut(s)	507, 606, 680, 831
BmsI	GCATC	1 cut(s)	847
Bpu10I	CCTNAGC	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	680
Bsa29I	ATCGAT	2 cut(s)	6, 64
BsaAI	YACGTR	1 cut(s)	883
BsaJI	CCNNGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	96
BseBI	CCWGG	3 cut(s)	507, 606, 831
BseCI	ATCGAT	2 cut(s)	6, 64
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	3 cut(s)	313, 505, 862
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	574, 613
BseYI	CCCAGC	1 cut(s)	449
BsgI	GTGCAG	2 cut(s)	53, 770
Bsh1236I	CGCG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	352
BshVI	ATCGAT	2 cut(s)	6, 64
BsiEI	CGRYCG	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	1 cut(s)	680
BslFI	GGGAC	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	611
Bsp1407I	TGTACA	2 cut(s)	106, 579
Bsp143I	GATC	5 cut(s)	3, 7, 349, 721, 906
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	5 cut(s)	178, 758, 779, 815, 854
BspCNI	CTCAG	1 cut(s)	244
BspDI	ATCGAT	2 cut(s)	6, 64
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	86, 843, 908
BspMAI	CTGCAG	1 cut(s)	850
BspMI	ACCTGC	1 cut(s)	196
BspPI	GGATC	2 cut(s)	901, 914
BsrDI	GCAATG	1 cut(s)	96
BsrGI	TGTACA	2 cut(s)	106, 579
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	5 cut(s)	3, 7, 349, 721, 906
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	3 cut(s)	507, 606, 831
Bst4CI	ACNGT	5 cut(s)	358, 394, 595, 625, 803
BstAUI	TGTACA	2 cut(s)	106, 579
BstBAI	YACGTR	1 cut(s)	883
BstC8I	GCNNGC	1 cut(s)	560
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	3 cut(s)	313, 505, 862
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	5 cut(s)	6, 10, 352, 724, 909
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	5 cut(s)	3, 7, 349, 721, 906
BstMCI	CGRYCG	1 cut(s)	352
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	3 cut(s)	507, 606, 831
BstSCI	CCNGG	4 cut(s)	505, 604, 678, 829
BstSFI	CTRYAG	1 cut(s)	846
BstSNI	TACGTA	1 cut(s)	883
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	574, 613
BstX2I	RGATCY	1 cut(s)	906
BstYI	RGATCY	1 cut(s)	906
Bsu15I	ATCGAT	2 cut(s)	6, 64
BsuI	GTATCC	1 cut(s)	872
BsuTUI	ATCGAT	2 cut(s)	6, 64
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	3 cut(s)	313, 505, 862
BtsI	GCAGTG	1 cut(s)	860
BtsIMutI	CAGTG	1 cut(s)	860
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	560
CaiI	CAGNNNCTG	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	842
ClaI	ATCGAT	2 cut(s)	6, 64
Csp6I	GTAC	4 cut(s)	47, 107, 580, 884
CviAII	CATG	5 cut(s)	226, 577, 583, 762, 893
CviJI	RGCY	9 cut(s)	250, 339, 449, 565, 575, 604, 686, 814, 897
CviKI_1	RGCY	9 cut(s)	250, 339, 449, 565, 575, 604, 686, 814, 897
CviQI	GTAC	4 cut(s)	47, 107, 580, 884
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	5 cut(s)	5, 9, 351, 723, 908
DpnII	GATC	5 cut(s)	3, 7, 349, 721, 906
Eco105I	TACGTA	1 cut(s)	883
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	842
Eco57I	CTGAAG	2 cut(s)	159, 552
Eco88I	CYCGRG	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	842
EcoRII	CCWGG	3 cut(s)	505, 604, 829
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	5 cut(s)	229, 580, 586, 765, 896
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	5 cut(s)	225, 576, 582, 761, 892
FauNDI	CATATG	2 cut(s)	649, 902
Fnu4HI	GCNGC	4 cut(s)	563, 602, 759, 815
FokI	GGATG	3 cut(s)	320, 512, 869
Fsp4HI	GCNGC	4 cut(s)	563, 602, 759, 815
GluI	GCNGC	4 cut(s)	563, 602, 759, 815
GsaI	CCCAGC	1 cut(s)	453
HapII	CCGG	1 cut(s)	680
Hin1II	CATG	5 cut(s)	229, 580, 586, 765, 896
HinfI	GANTC	5 cut(s)	37, 66, 397, 405, 609
HpaII	CCGG	1 cut(s)	680
HphI	GGTGA	2 cut(s)	521, 815
Hpy188I	TCNGA	1 cut(s)	571
Hpy188III	TCNNGA	4 cut(s)	362, 468, 613, 704
HpyAV	CCTTC	6 cut(s)	16, 134, 419, 531, 576, 748
HpyCH4III	ACNGT	5 cut(s)	358, 394, 595, 625, 803
HpyCH4IV	ACGT	3 cut(s)	658, 694, 882
HpyCH4V	TGCA	7 cut(s)	34, 59, 205, 562, 787, 848, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	3 cut(s)	658, 694, 882
Hsp92II	CATG	5 cut(s)	229, 580, 586, 765, 896
Kzo9I	GATC	5 cut(s)	3, 7, 349, 721, 906
Lsp1109I	GCAGC	2 cut(s)	574, 613
LweI	GCATC	1 cut(s)	847
MaeII	ACGT	3 cut(s)	658, 694, 882
MaeIII	GTNAC	2 cut(s)	509, 670
MalI	GATC	5 cut(s)	5, 9, 351, 723, 908
MboI	GATC	5 cut(s)	3, 7, 349, 721, 906
MboII	GAAGA	2 cut(s)	275, 763
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	1 cut(s)	906
MluCI	AATT	7 cut(s)	26, 171, 300, 463, 635, 699, 792
MlyI	GAGTC	1 cut(s)	603
MmeI	TCCRAC	2 cut(s)	404, 856
MnlI	CCTC	5 cut(s)	118, 298, 676, 710, 921
MroXI	GAANNNNTTC	2 cut(s)	318, 429
MseI	TTAA	3 cut(s)	461, 495, 809
MslI	CAYNNNNRTG	1 cut(s)	581
MspI	CCGG	1 cut(s)	680
MspR9I	CCNGG	4 cut(s)	507, 606, 680, 831
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	3 cut(s)	507, 606, 831
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	455
NciI	CCSGG	1 cut(s)	680
NcoI	CCATGG	1 cut(s)	225
NdeI	CATATG	2 cut(s)	649, 902
NdeII	GATC	5 cut(s)	3, 7, 349, 721, 906
NlaIII	CATG	5 cut(s)	229, 580, 586, 765, 896
NlaIV	GGNNCC	3 cut(s)	86, 843, 908
NmuCI	GTSAC	1 cut(s)	509
PaeR7I	CTCGAG	1 cut(s)	611
PdmI	GAANNNNTTC	2 cut(s)	318, 429
PfeI	GAWTC	4 cut(s)	37, 66, 397, 405
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	4 cut(s)	564, 603, 760, 816
Ple19I	CGATCG	1 cut(s)	352
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
Ppu21I	YACGTR	1 cut(s)	883
PpuMI	RGGWCCY	1 cut(s)	842
Psp1406I	AACGTT	1 cut(s)	658
Psp5II	RGGWCCY	1 cut(s)	842
Psp6I	CCWGG	3 cut(s)	505, 604, 829
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	3 cut(s)	505, 604, 829
PspN4I	GGNNCC	3 cut(s)	86, 843, 908
PspPI	GGNCC	1 cut(s)	842
PspPPI	RGGWCCY	1 cut(s)	842
PstI	CTGCAG	1 cut(s)	850
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	906
PvuI	CGATCG	1 cut(s)	352
RsaI	GTAC	4 cut(s)	48, 108, 581, 885
RsaNI	GTAC	4 cut(s)	47, 107, 580, 884
RseI	CAYNNNNRTG	1 cut(s)	581
SaqAI	TTAA	3 cut(s)	461, 495, 809
SatI	GCNGC	4 cut(s)	563, 602, 759, 815
Sau3AI	GATC	5 cut(s)	3, 7, 349, 721, 906
Sau96I	GGNCC	1 cut(s)	842
ScaI	AGTACT	1 cut(s)	48
SchI	GAGTC	1 cut(s)	603
ScrFI	CCNGG	4 cut(s)	507, 606, 680, 831
SfaNI	GCATC	1 cut(s)	847
SfcI	CTRYAG	1 cut(s)	846
Sfr274I	CTCGAG	1 cut(s)	611
SinI	GGWCC	1 cut(s)	842
SlaI	CTCGAG	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
SnaBI	TACGTA	1 cut(s)	883
Sse9I	AATT	7 cut(s)	26, 171, 300, 463, 635, 699, 792
SsiI	CCGC	5 cut(s)	178, 758, 779, 815, 854
StyD4I	CCNGG	4 cut(s)	505, 604, 678, 829
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	5 cut(s)	358, 394, 595, 625, 803
TaiI	ACGT	3 cut(s)	661, 697, 885
TaqI	TCGA	4 cut(s)	6, 64, 352, 612
TasI	AATT	7 cut(s)	26, 171, 300, 463, 635, 699, 792
TatI	WGTACW	3 cut(s)	46, 106, 579
TauI	GCSGC	2 cut(s)	761, 817
TfiI	GAWTC	4 cut(s)	37, 66, 397, 405
Tru1I	TTAA	3 cut(s)	461, 495, 809
Tru9I	TTAA	3 cut(s)	461, 495, 809
TscAI	CASTG	1 cut(s)	867
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	2 cut(s)	562, 601
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	5 cut(s)	177, 327, 429, 599, 705
TspRI	CASTG	1 cut(s)	867
VpaK11BI	GGWCC	1 cut(s)	842
XapI	RAATTY	1 cut(s)	463
XhoI	CTCGAG	1 cut(s)	611
XmnI	GAANNNNTTC	2 cut(s)	318, 429
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.