Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006615

Physical Location & Seq

Genomic Coordinates Reverse (-)

87332946 .. 87337057

Gene Structure 4112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG657000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGGATCAGGAGCATGGAAAATTGAGAAAAGGGATCATCTTCGAAGCGATTCCTTTAAAGATGTGGATAATGGGTTTCTGAATCCGAATGAAGTTCACATTTTCGGCTATGCAAGGACTAAGATTTCTGATGATGAGCTAAGAAGCCGCATACGTGGATATCTCATCCAAGGAGCTTCATCCAAGGACTTGGATGATGTAACCAAATTTTTGCAACTGATCAAATATGTGAGCGGTTCTTATGATGGTGAGGAGGGTTTTCGGCTGCTTGATAAGGAAATTGCAGTGCATGAAGTCTCCAAAAATAGTGCAGATGGAACATCTCGCAGGCTCTTTTATCTTGCACTTCCTCCATCAGTATATCCTTCTGTTTGCGGGATGATCAAGAACTACTGCATGAATAAATCTGATCTTGGTGGATGGACTCGTATTGTTGTTGAGAAGCCTTTTGGCAAGGATTTGGAATCTGCAGAGAAACTCAGTAATCAGATTGGACAGTTGTTTGATGAATCACAAATTTACCGTATTGATCACTATTTGGGAAAGGAATTGGTGCAGAATTTGTTGGTACTTCGTTTTGCAAATAGATTCTTTTTGCCCCTTTGGAACCGAGACAACATAGAGAATGTACAGATTGTGTTCAGGGAGGATTTTGGGACTGAAGGTCGAGGTGGATATTTTGATGAATATGGAATTATCCGCGATATTATCCAAAATCATCTATTGCAGGTTCTTTGTTTGGTTGCCATGGAAAAGCCTGTTTCCCTTAAACCTGAGCATATCCGGGATGAGAAAGTGAAGGTTCTTCAATCGGTACTTCCAATTAATGATGATGAAGTTGTTCTTGGACAATATGATGGGTATAGAGATGATCCAACTGTTCCTGACCACTCAAACACTCCCACTTTTTCAACTGTGGTTCTGCGTATACACAATGAAAGATGGGAAGGTGTTCCATTCATACTAAAGGCCGGAAAGGCATTGAATTCAAGAAAGGCAGAAATAAGGGTTCAGTTTAAGGATGTTCCTGGTGACATATTCAGATGTAAAAAACAAGGGAGGAATGAGTTCGTAATACGCTTGCAACCTTCAGAAGCAATGTACATGAAACTTACAGTCAAGCAGCCTGGACTAGAGATGTCAACTGTCCAAAGTGAATTAGACTTGTCATATGGGCAACGTTATCAAGGGGTGACAATCCCAGAGGCGTATGAACGCCTAATCCTTGATACAATAAAAGGCGATCAACAGCACTTTGTACGCAGAGATGAGTTGAAGGCGGCCTGGGAAATCTTCACACCTCTTCTGCACAGAATTGACAACGGTGAGCTAAAGCCGCTTCCATACAAACCAGGCAGTCGGGGTCCTGCAGAAGCGGATGCTCTGCTAGAGAAAGCTGGTTATGTACAAACACATGGCTATATATGGATCCCTCCCACCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

481

Amino Acids

55.1

Weight (kDa)

6.18

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	25 - 187	1.3e-45	Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C	PF02781	189 - 468	8.6e-112	Glucose-6-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27300 AT3G27300 AT3G27300 AT3G27300 AT3G27300 AT5G40760 AT5G40760
fragaria_vesca	FvH4_6g52720 FvH4_6g52720
malus_domestica	MD09G1017200.v1.1 MD17G1017900.v1.1
prunus_persica	Prupe.3G300200_v2.0.a1
pyrus_communis	pycom111g01400 pycom17g01440
rosa_chinensis	RchiOBHm_Chr2g0174331
rosa_multiflora	Rmu_co8509789.1_g000001 Rmu_sc0003649.1_g000038 Rmu_sc0007150.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078290
rosa_rugosa	Rorug02G0576200 Rorug02G0576300
rosa_samantha	Rh2AG657000 Rh2BG668000 Rh2CG631100 Rh2DG681700
rosa_wichuraiana	Rw2G053820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	718
AccBSI	CCGCTC	1 cut(s)	234
AccI	GTMKAC	1 cut(s)	928
AccII	CGCG	1 cut(s)	702
AciI	CCGC	7 cut(s)	148, 234, 375, 700, 1280, 1337, 1376
AclI	AACGTT	1 cut(s)	1180
AclWI	GGATC	5 cut(s)	13, 42, 866, 1423, 1436
AcsI	RAATTY	4 cut(s)	206, 516, 559, 985
AcuI	CTGAAG	2 cut(s)	681, 1074
AfaI	GTAC	6 cut(s)	570, 630, 816, 1103, 1260, 1407
AgsI	TTSAA	5 cut(s)	809, 912, 985, 990, 1276
AhdI	GACNNNNNGTC	1 cut(s)	663
AjnI	CCWGG	4 cut(s)	1027, 1126, 1283, 1351
AjuI	GAANNNNNNNTTGG	2 cut(s)	828, 860
AloI	GAACNNNNNNTCC	2 cut(s)	1206, 1238
AluBI	AGCT	4 cut(s)	139, 176, 1330, 1397
AluI	AGCT	4 cut(s)	139, 176, 1330, 1397
Alw26I	GTCTC	2 cut(s)	301, 606
AlwI	GGATC	5 cut(s)	13, 42, 866, 1423, 1436
AoxI	GGCC	2 cut(s)	969, 1281
ApeKI	GCWGC	2 cut(s)	265, 1123
ApoI	RAATTY	4 cut(s)	206, 516, 559, 985
AseI	ATTAAT	1 cut(s)	825
Asp700I	GAANNNNTTC	4 cut(s)	49, 840, 951, 1067
AspS9I	GGNCC	1 cut(s)	1364
AsuC2I	CCSGG	1 cut(s)	785
AsuHPI	GGTGA	4 cut(s)	260, 1043, 1204, 1337
AsuII	TTCGAA	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	1364
BamHI	GGATCC	1 cut(s)	1428
BbvI	GCAGC	2 cut(s)	252, 1135
BccI	CCATC	6 cut(s)	239, 308, 361, 414, 851, 936
BciT130I	CCWGG	4 cut(s)	1029, 1128, 1285, 1353
BclI	TGATCA	3 cut(s)	219, 381, 529
BcnI	CCSGG	1 cut(s)	785
BcoDI	GTCTC	2 cut(s)	301, 606
BfaI	CTAG	2 cut(s)	1133, 1388
BfmI	CTRYAG	2 cut(s)	468, 1368
BfuAI	ACCTGC	1 cut(s)	718
BglI	GCCNNNNNGGC	1 cut(s)	977
BisI	GCNGC	5 cut(s)	148, 266, 1124, 1281, 1337
BlsI	GCNGC	5 cut(s)	149, 267, 1125, 1282, 1338
Bme1390I	CCNGG	5 cut(s)	785, 1029, 1128, 1285, 1353
Bme18I	GGWCC	1 cut(s)	1364
BmeRI	GACNNNNNGTC	1 cut(s)	663
BmgT120I	GGNCC	1 cut(s)	1364
BmiI	GGNNCC	3 cut(s)	608, 1365, 1430
BmrFI	CCNGG	5 cut(s)	785, 1029, 1128, 1285, 1353
BmsI	GCATC	1 cut(s)	1369
Bpu10I	CCTNAGC	1 cut(s)	774
Bpu14I	TTCGAA	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	785
BsaAI	YACGTR	1 cut(s)	155
BsaJI	CCNNGG	4 cut(s)	169, 183, 747, 1284
Bse3DI	GCAATG	1 cut(s)	1104
BseBI	CCWGG	4 cut(s)	1029, 1128, 1285, 1353
BseDI	CCNNGG	4 cut(s)	169, 183, 747, 1284
BseGI	GGATG	8 cut(s)	165, 179, 199, 384, 425, 793, 1027, 1384
BseMI	GCAATG	1 cut(s)	1104
BseMII	CTCAG	2 cut(s)	493, 765
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	252, 1135
BsgI	GTGCAG	3 cut(s)	330, 575, 1292
Bsh1236I	CGCG	1 cut(s)	702
BshFI	GGCC	2 cut(s)	971, 1283
BsiSI	CCGG	2 cut(s)	784, 972
BslFI	GGGAC	1 cut(s)	670
BsmAI	GTCTC	2 cut(s)	301, 606
BsmFI	GGGAC	1 cut(s)	670
BsnI	GGCC	2 cut(s)	971, 1283
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1407I	TGTACA	3 cut(s)	628, 1101, 1405
Bsp143I	GATC	9 cut(s)	5, 34, 219, 381, 409, 529, 871, 1243, 1428
Bsp19I	CCATGG	1 cut(s)	747
BspACI	CCGC	7 cut(s)	148, 234, 375, 700, 1280, 1337, 1376
BspANI	GGCC	2 cut(s)	971, 1283
BspCNI	CTCAG	2 cut(s)	492, 766
BspFNI	CGCG	1 cut(s)	702
BspLI	GGNNCC	3 cut(s)	608, 1365, 1430
BspMAI	CTGCAG	2 cut(s)	472, 1372
BspMI	ACCTGC	1 cut(s)	718
BspPI	GGATC	5 cut(s)	13, 42, 866, 1423, 1436
BspT104I	TTCGAA	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	1104
BsrGI	TGTACA	3 cut(s)	628, 1101, 1405
BssECI	CCNNGG	4 cut(s)	169, 183, 747, 1284
BssMI	GATC	9 cut(s)	5, 34, 219, 381, 409, 529, 871, 1243, 1428
BssNAI	GTATAC	1 cut(s)	929
BssT1I	CCWWGG	3 cut(s)	169, 183, 747
Bst1107I	GTATAC	1 cut(s)	929
Bst2UI	CCWGG	4 cut(s)	1029, 1128, 1285, 1353
Bst4CI	ACNGT	7 cut(s)	498, 524, 880, 916, 1117, 1147, 1325
Bst6I	CTCTTC	1 cut(s)	1308
BstAUI	TGTACA	3 cut(s)	628, 1101, 1405
BstBAI	YACGTR	1 cut(s)	155
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	329, 1082
BstDEI	CTNAG	4 cut(s)	120, 140, 479, 774
BstDSI	CCRYGG	1 cut(s)	747
BstF5I	GGATG	8 cut(s)	165, 179, 199, 384, 425, 793, 1027, 1384
BstFNI	CGCG	1 cut(s)	702
BstKTI	GATC	9 cut(s)	8, 37, 222, 384, 412, 532, 874, 1246, 1431
BstMAI	GTCTC	2 cut(s)	301, 606
BstMBI	GATC	9 cut(s)	5, 34, 219, 381, 409, 529, 871, 1243, 1428
BstMWI	GCNNNNNNNGC	2 cut(s)	977, 1336
BstNI	CCWGG	4 cut(s)	1029, 1128, 1285, 1353
BstSCI	CCNGG	5 cut(s)	783, 1027, 1126, 1283, 1351
BstSFI	CTRYAG	2 cut(s)	468, 1368
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	2 cut(s)	252, 1135
BstX2I	RGATCY	1 cut(s)	1428
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	1428
BstZ17I	GTATAC	1 cut(s)	929
BsuRI	GGCC	2 cut(s)	971, 1283
BtgI	CCRYGG	1 cut(s)	747
BtsCI	GGATG	8 cut(s)	165, 179, 199, 384, 425, 793, 1027, 1384
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	2 cut(s)	329, 1082
Cfr13I	GGNCC	1 cut(s)	1364
Csp6I	GTAC	6 cut(s)	569, 629, 815, 1102, 1259, 1406
CviAII	CATG	6 cut(s)	15, 290, 397, 748, 1105, 1415
CviQI	GTAC	6 cut(s)	569, 629, 815, 1102, 1259, 1406
DdeI	CTNAG	4 cut(s)	120, 140, 479, 774
DpnI	GATC	9 cut(s)	7, 36, 221, 383, 411, 531, 873, 1245, 1430
DpnII	GATC	9 cut(s)	5, 34, 219, 381, 409, 529, 871, 1243, 1428
DraI	TTTAAA	1 cut(s)	58
DriI	GACNNNNNGTC	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	1308
Eam1105I	GACNNNNNGTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	1308
Eco130I	CCWWGG	3 cut(s)	169, 183, 747
Eco32I	GATATC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	1364
Eco57I	CTGAAG	2 cut(s)	681, 1074
EcoO109I	RGGNCCY	1 cut(s)	1364
EcoRI	GAATTC	1 cut(s)	985
EcoRII	CCWGG	4 cut(s)	1027, 1126, 1283, 1351
EcoRV	GATATC	1 cut(s)	161
EcoT14I	CCWWGG	3 cut(s)	169, 183, 747
ErhI	CCWWGG	3 cut(s)	169, 183, 747
FaeI	CATG	6 cut(s)	18, 293, 400, 751, 1108, 1418
FalI	AAGNNNNNCTT	2 cut(s)	828, 860
FaqI	GGGAC	1 cut(s)	670
FatI	CATG	6 cut(s)	14, 289, 396, 747, 1104, 1414
FauI	CCCGC	1 cut(s)	368
FauNDI	CATATG	1 cut(s)	1171
FbaI	TGATCA	3 cut(s)	219, 381, 529
FblI	GTMKAC	1 cut(s)	928
Fnu4HI	GCNGC	5 cut(s)	148, 266, 1124, 1281, 1337
FokI	GGATG	8 cut(s)	152, 166, 206, 391, 432, 800, 1034, 1391
Fsp4HI	GCNGC	5 cut(s)	148, 266, 1124, 1281, 1337
FspBI	CTAG	2 cut(s)	1133, 1388
GluI	GCNGC	5 cut(s)	148, 266, 1124, 1281, 1337
HaeIII	GGCC	2 cut(s)	971, 1283
HapII	CCGG	2 cut(s)	784, 972
Hin1II	CATG	6 cut(s)	18, 293, 400, 751, 1108, 1418
HincII	GTYRAC	1 cut(s)	1143
HindII	GTYRAC	1 cut(s)	1143
HinfI	GANTC	6 cut(s)	50, 82, 424, 464, 509, 588
HpaII	CCGG	2 cut(s)	784, 972
HphI	GGTGA	4 cut(s)	260, 1043, 1204, 1337
Hpy166II	GTNNAC	3 cut(s)	97, 929, 1143
Hpy188I	TCNGA	7 cut(s)	81, 87, 130, 409, 489, 1043, 1093
Hpy188III	TCNNGA	4 cut(s)	9, 385, 884, 990
Hpy8I	GTNNAC	3 cut(s)	97, 929, 1143
HpyAV	CCTTC	6 cut(s)	375, 656, 793, 941, 1098, 1270
HpyCH4III	ACNGT	7 cut(s)	498, 524, 880, 916, 1117, 1147, 1325
HpyCH4IV	ACGT	2 cut(s)	154, 1180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	977, 1336
HpyF3I	CTNAG	4 cut(s)	120, 140, 479, 774
HpySE526I	ACGT	2 cut(s)	154, 1180
Hsp92II	CATG	6 cut(s)	18, 293, 400, 751, 1108, 1418
Ksp22I	TGATCA	3 cut(s)	219, 381, 529
Kzo9I	GATC	9 cut(s)	5, 34, 219, 381, 409, 529, 871, 1243, 1428
LmnI	GCTCC	2 cut(s)	11, 173
Lsp1109I	GCAGC	2 cut(s)	252, 1135
LweI	GCATC	1 cut(s)	1369
MaeI	CTAG	2 cut(s)	1133, 1388
MaeII	ACGT	2 cut(s)	154, 1180
MaeIII	GTNAC	3 cut(s)	199, 1031, 1192
MalI	GATC	9 cut(s)	7, 36, 221, 383, 411, 531, 873, 1245, 1430
MbiI	CCGCTC	1 cut(s)	234
MboI	GATC	9 cut(s)	5, 34, 219, 381, 409, 529, 871, 1243, 1428
MboII	GAAGA	4 cut(s)	32, 797, 1285, 1295
MflI	RGATCY	1 cut(s)	1428
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	899
MnlI	CCTC	9 cut(s)	244, 247, 360, 640, 662, 1053, 1198, 1311, 1443
MroXI	GAANNNNTTC	4 cut(s)	49, 840, 951, 1067
MseI	TTAA	4 cut(s)	57, 768, 825, 1017
MspI	CCGG	2 cut(s)	784, 972
MspR9I	CCNGG	5 cut(s)	785, 1029, 1128, 1285, 1353
MvaI	CCWGG	4 cut(s)	1029, 1128, 1285, 1353
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	2 cut(s)	977, 1336
NciI	CCSGG	1 cut(s)	785
NcoI	CCATGG	1 cut(s)	747
NdeI	CATATG	1 cut(s)	1171
NdeII	GATC	9 cut(s)	5, 34, 219, 381, 409, 529, 871, 1243, 1428
NlaIII	CATG	6 cut(s)	18, 293, 400, 751, 1108, 1418
NlaIV	GGNNCC	3 cut(s)	608, 1365, 1430
NmuCI	GTSAC	2 cut(s)	1031, 1192
NspV	TTCGAA	1 cut(s)	43
PdmI	GAANNNNTTC	4 cut(s)	49, 840, 951, 1067
PfeI	GAWTC	5 cut(s)	50, 82, 464, 509, 588
PfoI	TCCNGGA	1 cut(s)	783
PkrI	GCNGC	5 cut(s)	149, 267, 1125, 1282, 1338
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Ppu21I	YACGTR	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	1364
PshBI	ATTAAT	1 cut(s)	825
Psp1406I	AACGTT	1 cut(s)	1180
Psp5II	RGGWCCY	1 cut(s)	1364
Psp6I	CCWGG	4 cut(s)	1027, 1126, 1283, 1351
PspGI	CCWGG	4 cut(s)	1027, 1126, 1283, 1351
PspN4I	GGNNCC	3 cut(s)	608, 1365, 1430
PspPI	GGNCC	1 cut(s)	1364
PspPPI	RGGWCCY	1 cut(s)	1364
PstI	CTGCAG	2 cut(s)	472, 1372
PsuI	RGATCY	1 cut(s)	1428
RsaI	GTAC	6 cut(s)	570, 630, 816, 1103, 1260, 1407
RsaNI	GTAC	6 cut(s)	569, 629, 815, 1102, 1259, 1406
SaqAI	TTAA	4 cut(s)	57, 768, 825, 1017
SatI	GCNGC	5 cut(s)	148, 266, 1124, 1281, 1337
Sau3AI	GATC	9 cut(s)	5, 34, 219, 381, 409, 529, 871, 1243, 1428
Sau96I	GGNCC	1 cut(s)	1364
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	5 cut(s)	785, 1029, 1128, 1285, 1353
SfaNI	GCATC	1 cut(s)	1369
SfcI	CTRYAG	2 cut(s)	468, 1368
SfuI	TTCGAA	1 cut(s)	43
SinI	GGWCC	1 cut(s)	1364
SsiI	CCGC	7 cut(s)	148, 234, 375, 700, 1280, 1337, 1376
SspMI	CTAG	2 cut(s)	1133, 1388
StyD4I	CCNGG	5 cut(s)	783, 1027, 1126, 1283, 1351
StyI	CCWWGG	3 cut(s)	169, 183, 747
TaaI	ACNGT	7 cut(s)	498, 524, 880, 916, 1117, 1147, 1325
TaiI	ACGT	2 cut(s)	157, 1183
TaqI	TCGA	2 cut(s)	43, 667
TatI	WGTACW	3 cut(s)	628, 1101, 1405
TauI	GCSGC	3 cut(s)	150, 1283, 1339
TfiI	GAWTC	5 cut(s)	50, 82, 464, 509, 588
Tru1I	TTAA	4 cut(s)	57, 768, 825, 1017
Tru9I	TTAA	4 cut(s)	57, 768, 825, 1017
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	1031, 1192
TseI	GCWGC	2 cut(s)	265, 1123
Tsp45I	GTSAC	2 cut(s)	1031, 1192
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	1364
VspI	ATTAAT	1 cut(s)	825
XapI	RAATTY	4 cut(s)	206, 516, 559, 985
XmiI	GTMKAC	1 cut(s)	928
XmnI	GAANNNNTTC	4 cut(s)	49, 840, 951, 1067
XspI	CTAG	2 cut(s)	1133, 1388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.