AT5G40760

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
16310663 .. 16314811
4149 bp
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UTR
Exon/CDS
Intron
AT5G40760.1

Sequence Viewer

Length: 1548 bp
ATGGGATCTGGTCAATGGCACGTTGAGAAAAGGTCTACGTTTAGGAATGATTCGTTTGTGAGAGAATATGGTATAGTTCCAGAAACTGGTTGTCTTTCAATCATAGTTCTTGGTGCTTCTGGTGATCTTGCTAAGAAGAAGACTTTTCCTGCTCTTTTTAACTTATACCGTCAGGGATTTCTCAATCCAGATGAAGTTCATATTTTCGGGTATGCGAGGACTAAGATTTCTGATGAAGAGCTGAGAGATAGGATTCGTGGATATCTTGTTGATGAGAAGAATGCTGAGCAAGCTGAAGCTTTGTCAAAGTTTCTGCAGCTGATTAAGTATGTGAGTGGCCCTTATGATGCTGAGGAGGGGTTCCAGAGATTAGACAAGGCAATTTCAGAGCACGAAATCTCCAAAAATAGTACTGAAGGGTCTTCTAGAAGACTGTTTTATCTTGCACTTCCACCGTCTGTTTATCCTTCTGTATGCAAGATGATCAAGACGTGCTGCATGAACAAATCTGATCTTGGTGGATGGACACGGATTGTTGTGGAGAAGCCATTTGGCAAGGACCTTGAATCTGCAGAGCAACTGAGTTCTCAGATTGGAGAGTTATTTGATGAATCACAGATCTATCGTATAGACCATTATCTTGGGAAGGAATTAGTTCAAAACATGTTGGTCCTCCGGTTTGCAAATCGCTTTTTCTTGCCACTTTGGAACCGTGACAATATCGAGAACGTGCAGATTGTTTTCAGGGAAGATTTTGGAACTGAAGGGCGTGGCGGATATTTTGACGAATATGGAATAATCCGTGATATTATTCAAAACCATCTGCTACAGGTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCATATCCGGGATGAGAAAGTGAAGGTGCTTCAATCTGTGGTTCCGATAAGCGATGACGAGGTAGTTCTTGGACAATACGAAGGATATAGGGATGATGATACTGTTCCAAACGACTCAAACACTCCAACATTTGCCACAACAATCCTTCGCATACACAACGAAAGATGGGAAGGTGTTCCATTTATATTAAAGGCCGGAAAAGCGTTGAATTCAAGGAAGGCAGAAATTCGCATTCAATTCAAGGATGTCCCAGGCGACATATTCAGATGTCAAAAGCAAGGAAGGAACGAGTTTGTGATACGCTTGCAACCTTCAGAGGCAATGTACATGAAACTAACTGTTAAGCAACCAGGTCTAGATATGAATACTGTGCAAAGTGAACTAGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCTATCCCTGAGGCATACGAGCGCTTAATTCTTGACACAATCAAAGGCGATCAACAACATTTCGTTCGTAGAGACGAATTAAAGGTTGCGTGGGAGATCTTCACGCCGCTACTCCACAGGATCGACAAAGGAGAAGTAAAGTCAATCCCATACAAACCAGGAAGCCGAGGACCGAAAGAAGCTGATCAGCTACTAGAGAAAGCTGGTTATCTTCAGACTCACGGCTATATCTGGATCCCTCCTACACTATAA

Protein Analysis

515

Amino Acids

59.12

Weight (kDa)

6.03

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G6PD_N PF00479 35 - 221 5.1e-62 Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C PF02781 223 - 502 1.1e-111 Glucose-6-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 86
AccI GTMKAC 1 cut(s) 35
AciI CCGC 2 cut(s) 774, 1403
AclWI GGATC 4 cut(s) 13, 1424, 1525, 1538
AcsI RAATTY 2 cut(s) 1087, 1104
AcuI CTGAAG 5 cut(s) 315, 435, 783, 1176, 1493
AfaI GTAC 2 cut(s) 412, 1205
AfeI AGCGCT 1 cut(s) 1319
AfiI CCNNNNNNNGG 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 9 cut(s) 99, 566, 659, 815, 911, 1087, 1092, 1115, 1120
AjiI CACGTC 1 cut(s) 492
AjnI CCWGG 3 cut(s) 1129, 1228, 1453
AluBI AGCT 7 cut(s) 241, 293, 299, 319, 1478, 1486, 1499
AluI AGCT 7 cut(s) 241, 293, 299, 319, 1478, 1486, 1499
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 1362
AlwI GGATC 4 cut(s) 13, 1424, 1525, 1538
AlwNI CAGNNNCTG 1 cut(s) 86
Aor51HI AGCGCT 1 cut(s) 1319
AoxI GGCC 2 cut(s) 337, 1071
ApeKI GCWGC 2 cut(s) 316, 495
ApoI RAATTY 2 cut(s) 1087, 1104
Asp700I GAANNNNTTC 2 cut(s) 654, 1053
AspLEI GCGC 1 cut(s) 1320
AspS9I GGNCC 4 cut(s) 338, 559, 670, 1466
AsuC2I CCSGG 1 cut(s) 887
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 3 cut(s) 559, 670, 1466
AxyI CCTNAGG 1 cut(s) 1305
BamHI GGATCC 1 cut(s) 1530
BbsI GAAGAC 3 cut(s) 146, 414, 436
Bbv12I GWGCWC 1 cut(s) 393
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 328, 482
BccI CCATC 3 cut(s) 516, 828, 1038
BceAI ACGGC 1 cut(s) 1534
BciT130I CCWGG 3 cut(s) 1131, 1230, 1455
BclI TGATCA 2 cut(s) 483, 1480
BcnI CCSGG 1 cut(s) 887
BcoDI GTCTC 1 cut(s) 1362
BfaI CTAG 4 cut(s) 426, 1235, 1262, 1490
BfmI CTRYAG 3 cut(s) 314, 570, 827
BfoI RGCGCY 1 cut(s) 1321
BglII AGATCT 2 cut(s) 618, 1392
BisI GCNGC 3 cut(s) 317, 496, 1403
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 3 cut(s) 318, 497, 1404
BmcAI AGTACT 1 cut(s) 412
Bme1390I CCNGG 4 cut(s) 887, 1131, 1230, 1455
Bme18I GGWCC 3 cut(s) 559, 670, 1466
BmgBI CACGTC 1 cut(s) 492
BmgT120I GGNCC 4 cut(s) 338, 559, 670, 1466
BmiI GGNNCC 4 cut(s) 362, 710, 921, 1532
BmrFI CCNGG 4 cut(s) 887, 1131, 1230, 1455
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 3 cut(s) 146, 414, 436
Bpu10I CCTNAGC 2 cut(s) 351, 876
Bpu1102I GCTNAGC 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 887
BsaJI CCNNGG 3 cut(s) 849, 1129, 1462
BsaWI WCCGGW 1 cut(s) 675
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 91
Bse21I CCTNAGG 1 cut(s) 1305
Bse3DI GCAATG 1 cut(s) 1206
BseBI CCWGG 3 cut(s) 1131, 1230, 1455
BseDI CCNNGG 3 cut(s) 849, 1129, 1462
BseGI GGATG 4 cut(s) 527, 895, 976, 1129
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 1206
BseMII CTCAG 7 cut(s) 233, 276, 342, 572, 602, 867, 1296
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 2 cut(s) 328, 482
BsgI GTGCAG 1 cut(s) 752
BshFI GGCC 2 cut(s) 339, 1073
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 3 cut(s) 676, 886, 1074
BslFI GGGAC 1 cut(s) 1112
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 1362
BsmBI CGTCTC 1 cut(s) 1362
BsmFI GGGAC 1 cut(s) 1112
BsmI GAATGC 2 cut(s) 286, 1110
BsnI GGCC 2 cut(s) 339, 1073
Bsp1286I GDGCHC 1 cut(s) 393
Bsp1407I TGTACA 1 cut(s) 1203
Bsp1720I GCTNAGC 1 cut(s) 285
Bsp19I CCATGG 1 cut(s) 849
BspACI CCGC 2 cut(s) 774, 1403
BspANI GGCC 2 cut(s) 339, 1073
BspCNI CTCAG 7 cut(s) 234, 277, 343, 573, 601, 868, 1297
BspLI GGNNCC 4 cut(s) 362, 710, 921, 1532
BspMAI CTGCAG 2 cut(s) 318, 574
BspPI GGATC 4 cut(s) 13, 1424, 1525, 1538
BspQI GCTCTTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 1206
BsrGI TGTACA 1 cut(s) 1203
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 3 cut(s) 849, 1129, 1462
BssT1I CCWWGG 1 cut(s) 849
Bst2UI CCWGG 3 cut(s) 1131, 1230, 1455
Bst4CI ACNGT 8 cut(s) 170, 435, 456, 713, 982, 1219, 1249, 1284
Bst6I CTCTTC 1 cut(s) 231
BstAUI TGTACA 1 cut(s) 1203
BstC8I GCNNGC 2 cut(s) 291, 1184
BstDEI CTNAG 9 cut(s) 132, 222, 242, 285, 351, 581, 588, 876, 1305
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 4 cut(s) 527, 895, 976, 1129
BstH2I RGCGCY 1 cut(s) 1321
BstHHI GCGC 1 cut(s) 1320
BstMAI GTCTC 1 cut(s) 1362
BstMWI GCNNNNNNNGC 2 cut(s) 290, 1079
BstNI CCWGG 3 cut(s) 1131, 1230, 1455
BstNSI RCATGY 1 cut(s) 667
BstSCI CCNGG 4 cut(s) 885, 1129, 1228, 1453
BstSFI CTRYAG 3 cut(s) 314, 570, 827
BstV1I GCAGC 2 cut(s) 328, 482
BstV2I GAAGAC 3 cut(s) 146, 414, 436
BstX2I RGATCY 4 cut(s) 5, 618, 1392, 1530
BstXI CCANNNNNNTGG 1 cut(s) 641
BstYI RGATCY 4 cut(s) 5, 618, 1392, 1530
Bsu36I CCTNAGG 1 cut(s) 1305
BsuRI GGCC 2 cut(s) 339, 1073
BtgI CCRYGG 1 cut(s) 849
BtgZI GCGATG 1 cut(s) 945
BtrI CACGTC 1 cut(s) 492
BtsCI GGATG 4 cut(s) 527, 895, 976, 1129
Cac8I GCNNGC 2 cut(s) 291, 1184
CaiI CAGNNNCTG 1 cut(s) 86
CfoI GCGC 1 cut(s) 1320
Cfr13I GGNCC 4 cut(s) 338, 559, 670, 1466
CsiI ACCWGGT 1 cut(s) 1228
Csp6I GTAC 2 cut(s) 411, 1204
CviAII CATG 4 cut(s) 499, 664, 850, 1207
CviQI GTAC 2 cut(s) 411, 1204
DdeI CTNAG 9 cut(s) 132, 222, 242, 285, 351, 581, 588, 876, 1305
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
EciI GGCGGA 1 cut(s) 789
Eco130I CCWWGG 1 cut(s) 849
Eco32I GATATC 1 cut(s) 263
Eco47I GGWCC 3 cut(s) 559, 670, 1466
Eco47III AGCGCT 1 cut(s) 1319
Eco57I CTGAAG 5 cut(s) 315, 435, 783, 1176, 1493
Eco81I CCTNAGG 1 cut(s) 1305
EcoO109I RGGNCCY 1 cut(s) 559
EcoRI GAATTC 1 cut(s) 1087
EcoRII CCWGG 3 cut(s) 1129, 1228, 1453
EcoRV GATATC 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 849
ErhI CCWWGG 1 cut(s) 849
Esp3I CGTCTC 1 cut(s) 1362
FaeI CATG 4 cut(s) 502, 667, 853, 1210
FaqI GGGAC 1 cut(s) 1112
FatI CATG 4 cut(s) 498, 663, 849, 1206
FbaI TGATCA 2 cut(s) 483, 1480
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 3 cut(s) 317, 496, 1403
FokI GGATG 4 cut(s) 534, 902, 983, 1136
Fsp4HI GCNGC 3 cut(s) 317, 496, 1403
FspBI CTAG 4 cut(s) 426, 1235, 1262, 1490
GlaI GCGC 1 cut(s) 1319
GluI GCNGC 3 cut(s) 317, 496, 1403
HaeII RGCGCY 1 cut(s) 1321
HaeIII GGCC 2 cut(s) 339, 1073
HapII CCGG 3 cut(s) 676, 886, 1074
HhaI GCGC 1 cut(s) 1320
Hin1II CATG 4 cut(s) 502, 667, 853, 1210
Hin6I GCGC 1 cut(s) 1318
HinP1I GCGC 1 cut(s) 1318
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 6 cut(s) 50, 253, 566, 611, 992, 1513
HpaII CCGG 3 cut(s) 676, 886, 1074
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 36, 1259
Hpy188I TCNGA 8 cut(s) 232, 388, 511, 591, 924, 1145, 1195, 1512
Hpy188III TCNNGA 9 cut(s) 80, 188, 364, 426, 487, 724, 1235, 1328, 1528
Hpy8I GTNNAC 2 cut(s) 36, 1259
HpyCH4III ACNGT 8 cut(s) 170, 435, 456, 713, 982, 1219, 1249, 1284
HpyCH4IV ACGT 4 cut(s) 21, 38, 491, 729
HpyCH4V TGCA 9 cut(s) 316, 446, 477, 498, 572, 683, 733, 1186, 1252
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 1079
HpyF3I CTNAG 9 cut(s) 132, 222, 242, 285, 351, 581, 588, 876, 1305
HpySE526I ACGT 4 cut(s) 21, 38, 491, 729
Hsp92II CATG 4 cut(s) 502, 667, 853, 1210
HspAI GCGC 1 cut(s) 1318
Ksp22I TGATCA 2 cut(s) 483, 1480
LguI GCTCTTC 1 cut(s) 231
Lsp1109I GCAGC 2 cut(s) 328, 482
LweI GCATC 1 cut(s) 337
MabI ACCWGGT 1 cut(s) 1228
MaeI CTAG 4 cut(s) 426, 1235, 1262, 1490
MaeII ACGT 4 cut(s) 21, 38, 491, 729
MaeIII GTNAC 1 cut(s) 713
MboII GAAGA 9 cut(s) 148, 151, 248, 289, 414, 441, 761, 1387, 1499
MflI RGATCY 4 cut(s) 5, 618, 1392, 1530
MhlI GDGCHC 1 cut(s) 393
MluCI AATT 7 cut(s) 381, 650, 1087, 1104, 1115, 1323, 1373
MlyI GAGTC 2 cut(s) 986, 1507
MmeI TCCRAC 1 cut(s) 1028
MnlI CCTC 9 cut(s) 210, 346, 349, 683, 931, 1189, 1300, 1457, 1545
MroXI GAANNNNTTC 2 cut(s) 654, 1053
MseI TTAA 7 cut(s) 159, 324, 870, 1067, 1221, 1322, 1376
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 3 cut(s) 676, 886, 1074
MspR9I CCNGG 4 cut(s) 887, 1131, 1230, 1455
Mva1269I GAATGC 2 cut(s) 286, 1110
MvaI CCWGG 3 cut(s) 1131, 1230, 1455
MwoI GCNNNNNNNGC 2 cut(s) 290, 1079
NciI CCSGG 1 cut(s) 887
NcoI CCATGG 1 cut(s) 849
NlaIII CATG 4 cut(s) 502, 667, 853, 1210
NlaIV GGNNCC 4 cut(s) 362, 710, 921, 1532
NmeAIII GCCGAG 1 cut(s) 1487
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 1 cut(s) 667
PciI ACATGT 1 cut(s) 663
PciSI GCTCTTC 1 cut(s) 231
PctI GAATGC 2 cut(s) 286, 1110
PdmI GAANNNNTTC 2 cut(s) 654, 1053
PfeI GAWTC 4 cut(s) 50, 253, 566, 611
PflMI CCANNNNNTGG 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 885
PkrI GCNGC 3 cut(s) 318, 497, 1404
PleI GAGTC 2 cut(s) 986, 1507
PpsI GAGTC 2 cut(s) 986, 1507
PpuMI RGGWCCY 1 cut(s) 559
PscI ACATGT 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 559
Psp6I CCWGG 3 cut(s) 1129, 1228, 1453
PspGI CCWGG 3 cut(s) 1129, 1228, 1453
PspN4I GGNNCC 4 cut(s) 362, 710, 921, 1532
PspPI GGNCC 4 cut(s) 338, 559, 670, 1466
PspPPI RGGWCCY 1 cut(s) 559
PstI CTGCAG 2 cut(s) 318, 574
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 4 cut(s) 5, 618, 1392, 1530
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 2 cut(s) 412, 1205
RsaNI GTAC 2 cut(s) 411, 1204
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 7 cut(s) 159, 324, 870, 1067, 1221, 1322, 1376
SatI GCNGC 3 cut(s) 317, 496, 1403
Sau96I GGNCC 4 cut(s) 338, 559, 670, 1466
ScaI AGTACT 1 cut(s) 412
SchI GAGTC 2 cut(s) 986, 1507
ScrFI CCNGG 4 cut(s) 887, 1131, 1230, 1455
SduI GDGCHC 1 cut(s) 393
SexAI ACCWGGT 1 cut(s) 1228
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 3 cut(s) 314, 570, 827
SinI GGWCC 3 cut(s) 559, 670, 1466
Sse9I AATT 7 cut(s) 381, 650, 1087, 1104, 1115, 1323, 1373
SsiI CCGC 2 cut(s) 774, 1403
SspMI CTAG 4 cut(s) 426, 1235, 1262, 1490
StyD4I CCNGG 4 cut(s) 885, 1129, 1228, 1453
StyI CCWWGG 1 cut(s) 849
TaaI ACNGT 8 cut(s) 170, 435, 456, 713, 982, 1219, 1249, 1284
TaiI ACGT 4 cut(s) 24, 41, 494, 732
TaqI TCGA 2 cut(s) 723, 1419
TaqII GACCGA 1 cut(s) 1483
TasI AATT 7 cut(s) 381, 650, 1087, 1104, 1115, 1323, 1373
TatI WGTACW 2 cut(s) 410, 1203
TauI GCSGC 1 cut(s) 1405
TfiI GAWTC 4 cut(s) 50, 253, 566, 611
Tru1I TTAA 7 cut(s) 159, 324, 870, 1067, 1221, 1322, 1376
Tru9I TTAA 7 cut(s) 159, 324, 870, 1067, 1221, 1322, 1376
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 2 cut(s) 316, 495
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 7 cut(s) 188, 207, 249, 515, 624, 1223, 1256
TspGWI ACGGA 2 cut(s) 544, 791
Van91I CCANNNNNTGG 1 cut(s) 86
VpaK11BI GGWCC 3 cut(s) 559, 670, 1466
XapI RAATTY 2 cut(s) 1087, 1104
XbaI TCTAGA 2 cut(s) 425, 1234
XceI RCATGY 1 cut(s) 667
XmiI GTMKAC 1 cut(s) 35
XmnI GAANNNNTTC 2 cut(s) 654, 1053
XspI CTAG 4 cut(s) 426, 1235, 1262, 1490
ZrmI AGTACT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.