Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006615

Physical Location & Seq

Genomic Coordinates Reverse (-)

38732130 .. 38737168

Gene Structure 5039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52720.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGGGATCAGGAGCATGGAAGATTGAGAAAAGAGACGATTTTAGAAGCGAAACTTTTAAAGAGGAGAATGTGCTTGAGAATGGGACTCTGTCGATTATCGTGCTTGGCGCGTCCGGTGATCTTGCCAAGAAGAAGACATTTCCTGCGCTGTTCCACCTTTTTAAGCAGGGGTTCCTGAATCCAAATGAAGTTCACATTTTCGGCTATGCAAGGACTAAGATTTCTGATGATGAGCTAAGAAGCCGCATACGTGGATATCTTATCCAAGGAGCTTCCTCCAAGGACTTGGAAGAAGTAACCAAATTTTTGCAACTGATCAAATACGTGAGTGGTTCTTATGATGGTGAGGAGGGTTTTCGGCAGCTTGACAAGGAAATTGCAGTTCACGAAGACTCCAAAAACAGTGCAGATGGATCGTCTCGCAGGCTCTTTTATCTCGCACTTCCTCCATCAGTATATCCATCTGTTTGTGGCATGATCAAGAACTATTGCATGAATAACTCTGATCATGGTGGTTGGACTCGTATTGTTGTTGAAAAGCCTTTTGGAAAGGATTTGGAATCTGCAGAGAAACTCAGTAATCAGATTGGAGAATTGTTTGATGAATCACAAATTTACCGTATTGATCACTATTTGGGAAAGGAATTGGTGCAAAATTTGTTGGTACTTCGTTTTGCAAATAGATTCTTTTTGCCCCTTTGGAACCGAGACAACATAGAGAATGTACAGATTGTGTTCAGGGAGGATTTTGGAACTGAAGGTCGAGGTGGATATTTTGATGAATATGGAATTATCCGCGATATTATCCAAAATCATCTATTGCAGGTTCTTTGTTTGGTCGCCATGGAAAAGCCTGTTTCCCTTAAACCTGAGCATATCCGGGATGAGAAAGTGAAGGTTCTTCAATCGGTACTTCCAATTAACGACGATGAAGTTGTTCTTGGACAATATGATGGGTATACAGATGATCCAACTGTTCCTGACCACTCAAACACTCCCACTTTTTCAACTGTGGTTCTGCGTATACATAATGAAAGATGGGAAGGTGTTCCATTCATACTAAAGGCTGGAAAGGCATTGAATTCAAGAAAGGCAGAAATAAGGGTTCAGTTTAAGGATGTTCCTGGTGACATATTCAGATGTAAAAAACAAGGGAGGAATGAGTTCGTAATACGCTTGCAACCTTCAGAAGCTATGTACATGAAACTTACGGTTAAGCAGCCTGGACTTGAGATGTCGACTGTCCAAAGTGAATTAGACTTGTCATATGGGCAACGTTATCAAGGGGTAGCAATCCCAGAGGCTTATGAACGCCTTATTCTTGACACAATAAAAGGAGATCAACAACATTTTGTACGCAGAGATGAGTTGAAGGCCGCCTGGGAAATCTTCACACCTCTTCTGCACAGAATTGACAACGGTGAGCTAAAGCCACTTCCATACAAACCAGGCAGTAGGGGTCCTGAAGCAGCAGATGCGCTGCTAGAGAAAGCTGGTTATGTACAAACACATGGCTATATATGGATCCCTCCCACCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

514

Amino Acids

58.58

Weight (kDa)

5.93

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G6PD_N	PF00479	33 - 219	1.2e-59	Glucose-6-phosphate dehydrogenase, NAD binding domain
G6PD_C	PF02781	221 - 500	1.9e-111	Glucose-6-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27300 AT3G27300 AT3G27300 AT3G27300 AT3G27300 AT5G40760 AT5G40760
fragaria_vesca	FvH4_6g52720 FvH4_6g52720
malus_domestica	MD09G1017200.v1.1 MD17G1017900.v1.1
prunus_persica	Prupe.3G300200_v2.0.a1
pyrus_communis	pycom111g01400 pycom17g01440
rosa_chinensis	RchiOBHm_Chr2g0174331
rosa_multiflora	Rmu_co8509789.1_g000001 Rmu_sc0003649.1_g000038 Rmu_sc0007150.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078290
rosa_rugosa	Rorug02G0576200 Rorug02G0576300
rosa_samantha	Rh2AG657000 Rh2BG668000 Rh2CG631100 Rh2DG681700
rosa_wichuraiana	Rw2G053820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	814
AccI	GTMKAC	3 cut(s)	959, 1024, 1238
AccII	CGCG	2 cut(s)	110, 798
AciI	CCGC	3 cut(s)	244, 796, 1377
AclI	AACGTT	1 cut(s)	1276
AclWI	GGATC	5 cut(s)	13, 421, 962, 1519, 1532
AcsI	RAATTY	4 cut(s)	302, 612, 655, 1081
AcuI	CTGAAG	3 cut(s)	777, 1170, 1485
AfaI	GTAC	6 cut(s)	666, 726, 912, 1199, 1356, 1503
AgsI	TTSAA	6 cut(s)	536, 905, 1008, 1081, 1086, 1372
AjnI	CCWGG	4 cut(s)	1123, 1222, 1379, 1447
AjuI	GAANNNNNNNTTGG	4 cut(s)	528, 560, 924, 956
AluBI	AGCT	6 cut(s)	235, 272, 364, 1193, 1426, 1493
AluI	AGCT	6 cut(s)	235, 272, 364, 1193, 1426, 1493
Alw26I	GTCTC	3 cut(s)	27, 423, 702
AlwI	GGATC	5 cut(s)	13, 421, 962, 1519, 1532
AoxI	GGCC	1 cut(s)	1374
ApeKI	GCWGC	4 cut(s)	361, 1219, 1469, 1480
ApoI	RAATTY	4 cut(s)	302, 612, 655, 1081
Asp700I	GAANNNNTTC	3 cut(s)	936, 1047, 1163
AspLEI	GCGC	3 cut(s)	110, 148, 1480
AspS9I	GGNCC	1 cut(s)	1460
AsuC2I	CCSGG	1 cut(s)	881
AsuHPI	GGTGA	4 cut(s)	128, 356, 1139, 1433
AvaII	GGWCC	1 cut(s)	1460
BamHI	GGATCC	1 cut(s)	1524
BbsI	GAAGAC	2 cut(s)	140, 396
BbvI	GCAGC	4 cut(s)	373, 1231, 1467, 1481
BccI	CCATC	6 cut(s)	335, 404, 457, 469, 947, 1032
BcgI	CGANNNNNNTGC	4 cut(s)	82, 116, 396, 430
BciT130I	CCWGG	4 cut(s)	1125, 1224, 1381, 1449
BclI	TGATCA	4 cut(s)	315, 477, 505, 625
BcnI	CCSGG	1 cut(s)	881
BcoDI	GTCTC	3 cut(s)	27, 423, 702
BfaI	CTAG	1 cut(s)	1484
BfmI	CTRYAG	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	814
BisI	GCNGC	6 cut(s)	244, 362, 1220, 1377, 1470, 1481
BlsI	GCNGC	6 cut(s)	245, 363, 1221, 1378, 1471, 1482
Bme1390I	CCNGG	5 cut(s)	881, 1125, 1224, 1381, 1449
Bme18I	GGWCC	1 cut(s)	1460
BmgT120I	GGNCC	1 cut(s)	1460
BmiI	GGNNCC	4 cut(s)	173, 704, 1461, 1526
BmrFI	CCNGG	5 cut(s)	881, 1125, 1224, 1381, 1449
BmsI	GCATC	1 cut(s)	1465
BpiI	GAAGAC	2 cut(s)	140, 396
Bpu10I	CCTNAGC	1 cut(s)	870
BpuEI	CTTGAG	2 cut(s)	95, 1250
BpuMI	CCSGG	1 cut(s)	881
BsaAI	YACGTR	2 cut(s)	251, 325
BsaJI	CCNNGG	4 cut(s)	265, 279, 843, 1380
BsaWI	WCCGGW	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
BseBI	CCWGG	4 cut(s)	1125, 1224, 1381, 1449
BseDI	CCNNGG	4 cut(s)	265, 279, 843, 1380
BseGI	GGATG	2 cut(s)	889, 1123
BseMII	CTCAG	2 cut(s)	589, 861
BseRI	GAGGAG	2 cut(s)	77, 362
BseXI	GCAGC	4 cut(s)	373, 1231, 1467, 1481
BsgI	GTGCAG	2 cut(s)	426, 1388
Bsh1236I	CGCG	2 cut(s)	110, 798
BshFI	GGCC	1 cut(s)	1376
BsiSI	CCGG	2 cut(s)	114, 880
BslFI	GGGAC	1 cut(s)	97
BsmAI	GTCTC	3 cut(s)	27, 423, 702
BsmBI	CGTCTC	2 cut(s)	27, 423
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	1376
Bsp1407I	TGTACA	3 cut(s)	724, 1197, 1501
Bsp19I	CCATGG	1 cut(s)	843
BspACI	CCGC	3 cut(s)	244, 796, 1377
BspANI	GGCC	1 cut(s)	1376
BspCNI	CTCAG	2 cut(s)	588, 862
BspFNI	CGCG	2 cut(s)	110, 798
BspLI	GGNNCC	4 cut(s)	173, 704, 1461, 1526
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	814
BspPI	GGATC	5 cut(s)	13, 421, 962, 1519, 1532
BsrGI	TGTACA	3 cut(s)	724, 1197, 1501
BssECI	CCNNGG	4 cut(s)	265, 279, 843, 1380
BssNAI	GTATAC	2 cut(s)	960, 1025
BssT1I	CCWWGG	3 cut(s)	265, 279, 843
Bst1107I	GTATAC	2 cut(s)	960, 1025
Bst2UI	CCWGG	4 cut(s)	1125, 1224, 1381, 1449
Bst4CI	ACNGT	7 cut(s)	404, 620, 976, 1012, 1213, 1243, 1421
Bst6I	CTCTTC	1 cut(s)	1404
BstAPI	GCANNNNNTGC	1 cut(s)	1475
BstAUI	TGTACA	3 cut(s)	724, 1197, 1501
BstBAI	YACGTR	2 cut(s)	251, 325
BstC8I	GCNNGC	2 cut(s)	425, 1178
BstDEI	CTNAG	4 cut(s)	216, 236, 575, 870
BstDSI	CCRYGG	1 cut(s)	843
BstF5I	GGATG	2 cut(s)	889, 1123
BstFNI	CGCG	2 cut(s)	110, 798
BstHHI	GCGC	3 cut(s)	110, 148, 1480
BstMAI	GTCTC	3 cut(s)	27, 423, 702
BstMWI	GCNNNNNNNGC	2 cut(s)	1073, 1475
BstNI	CCWGG	4 cut(s)	1125, 1224, 1381, 1449
BstSCI	CCNGG	5 cut(s)	879, 1123, 1222, 1379, 1447
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	2 cut(s)	110, 798
BstV1I	GCAGC	4 cut(s)	373, 1231, 1467, 1481
BstV2I	GAAGAC	2 cut(s)	140, 396
BstX2I	RGATCY	1 cut(s)	1524
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	1524
BstZ17I	GTATAC	2 cut(s)	960, 1025
BsuRI	GGCC	1 cut(s)	1376
BtgI	CCRYGG	1 cut(s)	843
BtsCI	GGATG	2 cut(s)	889, 1123
BtsIMutI	CAGTG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	814
Cac8I	GCNNGC	2 cut(s)	425, 1178
CfoI	GCGC	3 cut(s)	110, 148, 1480
Cfr13I	GGNCC	1 cut(s)	1460
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	6 cut(s)	665, 725, 911, 1198, 1355, 1502
CviAII	CATG	7 cut(s)	15, 475, 493, 509, 844, 1201, 1511
CviQI	GTAC	6 cut(s)	665, 725, 911, 1198, 1355, 1502
DdeI	CTNAG	4 cut(s)	216, 236, 575, 870
DraI	TTTAAA	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	1404
EarI	CTCTTC	1 cut(s)	1404
Eco130I	CCWWGG	3 cut(s)	265, 279, 843
Eco32I	GATATC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	1460
Eco57I	CTGAAG	3 cut(s)	777, 1170, 1485
EcoO109I	RGGNCCY	1 cut(s)	1460
EcoRI	GAATTC	1 cut(s)	1081
EcoRII	CCWGG	4 cut(s)	1123, 1222, 1379, 1447
EcoRV	GATATC	1 cut(s)	257
EcoT14I	CCWWGG	3 cut(s)	265, 279, 843
ErhI	CCWWGG	3 cut(s)	265, 279, 843
Esp3I	CGTCTC	2 cut(s)	27, 423
FaeI	CATG	7 cut(s)	18, 478, 496, 512, 847, 1204, 1514
FalI	AAGNNNNNCTT	4 cut(s)	37, 69, 924, 956
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	7 cut(s)	14, 474, 492, 508, 843, 1200, 1510
FauNDI	CATATG	1 cut(s)	1267
FbaI	TGATCA	4 cut(s)	315, 477, 505, 625
FblI	GTMKAC	3 cut(s)	959, 1024, 1238
Fnu4HI	GCNGC	6 cut(s)	244, 362, 1220, 1377, 1470, 1481
FokI	GGATG	2 cut(s)	896, 1130
Fsp4HI	GCNGC	6 cut(s)	244, 362, 1220, 1377, 1470, 1481
FspBI	CTAG	1 cut(s)	1484
GlaI	GCGC	3 cut(s)	109, 147, 1479
GluI	GCNGC	6 cut(s)	244, 362, 1220, 1377, 1470, 1481
HaeIII	GGCC	1 cut(s)	1376
HapII	CCGG	2 cut(s)	114, 880
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	3 cut(s)	110, 148, 1480
Hin1II	CATG	7 cut(s)	18, 478, 496, 512, 847, 1204, 1514
Hin6I	GCGC	3 cut(s)	108, 146, 1478
HinP1I	GCGC	3 cut(s)	108, 146, 1478
HincII	GTYRAC	1 cut(s)	1239
HindII	GTYRAC	1 cut(s)	1239
HinfI	GANTC	7 cut(s)	85, 178, 392, 520, 560, 605, 684
HpaII	CCGG	2 cut(s)	114, 880
HphI	GGTGA	4 cut(s)	128, 356, 1139, 1433
Hpy166II	GTNNAC	5 cut(s)	193, 385, 960, 1025, 1239
Hpy188I	TCNGA	5 cut(s)	226, 505, 585, 1139, 1189
Hpy188III	TCNNGA	8 cut(s)	9, 175, 386, 481, 980, 1086, 1322, 1463
Hpy8I	GTNNAC	5 cut(s)	193, 385, 960, 1025, 1239
Hpy99I	CGWCG	1 cut(s)	929
HpyAV	CCTTC	5 cut(s)	752, 889, 1037, 1194, 1366
HpyCH4III	ACNGT	7 cut(s)	404, 620, 976, 1012, 1213, 1243, 1421
HpyCH4IV	ACGT	3 cut(s)	250, 324, 1276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1073, 1475
HpyF3I	CTNAG	4 cut(s)	216, 236, 575, 870
HpySE526I	ACGT	3 cut(s)	250, 324, 1276
Hsp92II	CATG	7 cut(s)	18, 478, 496, 512, 847, 1204, 1514
HspAI	GCGC	3 cut(s)	108, 146, 1478
Ksp22I	TGATCA	4 cut(s)	315, 477, 505, 625
LmnI	GCTCC	2 cut(s)	11, 269
Lsp1109I	GCAGC	4 cut(s)	373, 1231, 1467, 1481
LweI	GCATC	1 cut(s)	1465
MaeI	CTAG	1 cut(s)	1484
MaeII	ACGT	3 cut(s)	250, 324, 1276
MaeIII	GTNAC	2 cut(s)	295, 1127
MboII	GAAGA	8 cut(s)	31, 142, 145, 302, 401, 893, 1381, 1391
MflI	RGATCY	1 cut(s)	1524
MlyI	GAGTC	3 cut(s)	79, 386, 514
MmeI	TCCRAC	2 cut(s)	497, 995
MroXI	GAANNNNTTC	3 cut(s)	936, 1047, 1163
MseI	TTAA	6 cut(s)	57, 162, 864, 921, 1113, 1215
MspI	CCGG	2 cut(s)	114, 880
MspR9I	CCNGG	5 cut(s)	881, 1125, 1224, 1381, 1449
MvaI	CCWGG	4 cut(s)	1125, 1224, 1381, 1449
MvnI	CGCG	2 cut(s)	110, 798
MwoI	GCNNNNNNNGC	2 cut(s)	1073, 1475
NciI	CCSGG	1 cut(s)	881
NcoI	CCATGG	1 cut(s)	843
NdeI	CATATG	1 cut(s)	1267
NlaIII	CATG	7 cut(s)	18, 478, 496, 512, 847, 1204, 1514
NlaIV	GGNNCC	4 cut(s)	173, 704, 1461, 1526
NmuCI	GTSAC	1 cut(s)	1127
PdmI	GAANNNNTTC	3 cut(s)	936, 1047, 1163
PfeI	GAWTC	4 cut(s)	178, 560, 605, 684
PflFI	GACNNNGTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	879
PkrI	GCNGC	6 cut(s)	245, 363, 1221, 1378, 1471, 1482
PleI	GAGTC	3 cut(s)	79, 386, 514
PpsI	GAGTC	3 cut(s)	79, 386, 514
Ppu21I	YACGTR	2 cut(s)	251, 325
PpuMI	RGGWCCY	1 cut(s)	1460
Psp1406I	AACGTT	1 cut(s)	1276
Psp5II	RGGWCCY	1 cut(s)	1460
Psp6I	CCWGG	4 cut(s)	1123, 1222, 1379, 1447
PspGI	CCWGG	4 cut(s)	1123, 1222, 1379, 1447
PspN4I	GGNNCC	4 cut(s)	173, 704, 1461, 1526
PspPI	GGNCC	1 cut(s)	1460
PspPPI	RGGWCCY	1 cut(s)	1460
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	1524
PsyI	GACNNNGTC	1 cut(s)	88
RsaI	GTAC	6 cut(s)	666, 726, 912, 1199, 1356, 1503
RsaNI	GTAC	6 cut(s)	665, 725, 911, 1198, 1355, 1502
SalI	GTCGAC	1 cut(s)	1237
SaqAI	TTAA	6 cut(s)	57, 162, 864, 921, 1113, 1215
SatI	GCNGC	6 cut(s)	244, 362, 1220, 1377, 1470, 1481
Sau96I	GGNCC	1 cut(s)	1460
SchI	GAGTC	3 cut(s)	79, 386, 514
ScrFI	CCNGG	5 cut(s)	881, 1125, 1224, 1381, 1449
SfaNI	GCATC	1 cut(s)	1465
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	1460
SmlI	CTYRAG	2 cut(s)	74, 1229
SmoI	CTYRAG	2 cut(s)	74, 1229
SsiI	CCGC	3 cut(s)	244, 796, 1377
SspMI	CTAG	1 cut(s)	1484
StyD4I	CCNGG	5 cut(s)	879, 1123, 1222, 1379, 1447
StyI	CCWWGG	3 cut(s)	265, 279, 843
TaaI	ACNGT	7 cut(s)	404, 620, 976, 1012, 1213, 1243, 1421
TaiI	ACGT	3 cut(s)	253, 327, 1279
TaqI	TCGA	3 cut(s)	92, 763, 1238
TatI	WGTACW	3 cut(s)	724, 1197, 1501
TauI	GCSGC	2 cut(s)	246, 1379
TfiI	GAWTC	4 cut(s)	178, 560, 605, 684
Tru1I	TTAA	6 cut(s)	57, 162, 864, 921, 1113, 1215
Tru9I	TTAA	6 cut(s)	57, 162, 864, 921, 1113, 1215
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	1127
TseI	GCWGC	4 cut(s)	361, 1219, 1469, 1480
Tsp45I	GTSAC	1 cut(s)	1127
TspDTI	ATGAA	9 cut(s)	201, 509, 618, 795, 945, 1045, 1047, 1217, 1323
TspRI	CASTG	1 cut(s)	409
Tth111I	GACNNNGTC	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	1460
XapI	RAATTY	4 cut(s)	302, 612, 655, 1081
XmiI	GTMKAC	3 cut(s)	959, 1024, 1238
XmnI	GAANNNNTTC	3 cut(s)	936, 1047, 1163
XspI	CTAG	1 cut(s)	1484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.