Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006615

Physical Location & Seq

Genomic Coordinates Reverse (-)

977409 .. 980450

Gene Structure 3042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g01440.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGTGAGGAAGGATTTCGCCTGCTGGATAAGGAAATTTCAGATAATGAAATCTCAAAGAATAGTGCGGAAGGATCGATCCCGCAAGCTCTTTTATCTTGCACTTCCTCCATCAGTATACCCCTCTGTCTGCAGGATGATCAGGCATTATTGCATGAATAGATCTGATCTTGGTGGATGGACTCGTATTGTTGTTGAGAAGCCTTTTGGCAAGGATTTGGACTCTGCAGAACAACTCAGTAACCAGATCGGGGAGTTGTTCGAGGAATCACAAATTTACCGTATCGATCACTATTTGGGGAAGGAGTTGGTGCAGAATCTGTTAGTACTTCGTTTTGCAAATCGATTCTTTTTGCCCCTTTGGAACCGAGACAACATTGAGAATGTACAGATTGTGTTTAGGGAGGATTTTGGAACTGAAGGTCGAGGTGGATACTTTGATGAATATGGAATTATCCGCGATATTATTCAAAATCATCTCTTGCAGGTTCTATGCTTGGTTGCCATGGAAAAACCTATTTCCCTAAAACCTGAGCACATACGGGACGAGAAAGTAAAGGTTCTTCAATCAGTGATGCCAATTAAGGATGATGAAGTTGTTCTTGGACAATATGATGGCTACACAGACGATCGAACTGTTCCTGACCACTCAAACACTCCAACCTTTTCAACCGTGATTCTGCGAATCCACAACGAAAGATGGGAAGGTGTTCCTTTTATACTAAAGGCCGGGAAAGCATTGAATTCTAGAAAGGCAGAAATAAGAGTTCAATTTAAGGATGTTCCTGGTGACATATTCAAATGTAAGAAGCAAGGGAGGAATGAGTTTGTAATACGCTTGCAGCCTTCAGAAGCCATGTACATGAAACTTACGGTGAAGCAGCCTGGACTTGAGATGTCAACTGTCCAAAGTGAATTAGACTTGTCATACGGGCAACGTTATCAAGGGGTAACTATCCCGGAGGCTTATGAACGTCTAATTCTTGACACAAGAGGCGATCAACAACATTTTGTGCGAAGAGACGAGTTGAAGGCGGCGTGGGAAATCTTCACCCCTCTTCTGCACAGGATTGACAATGGTGAGGTAAAGCCGCTTCCATACCAACCAGGCAGTCGGGGTCCTGCAGAAGCAGATGCACTGCTAGAAAAAGTTGGTTACGTGCAAACACATGGCTACATATGGATCCCTCCTACCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

400

Amino Acids

46.49

Weight (kDa)

8.61

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27300 AT3G27300 AT3G27300 AT3G27300 AT3G27300 AT5G40760 AT5G40760
fragaria_vesca	FvH4_6g52720 FvH4_6g52720
malus_domestica	MD09G1017200.v1.1 MD17G1017900.v1.1
prunus_persica	Prupe.3G300200_v2.0.a1
pyrus_communis	pycom111g01400 pycom17g01440
rosa_chinensis	RchiOBHm_Chr2g0174331
rosa_multiflora	Rmu_co8509789.1_g000001 Rmu_sc0003649.1_g000038 Rmu_sc0007150.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078290
rosa_rugosa	Rorug02G0576200 Rorug02G0576300
rosa_samantha	Rh2AG657000 Rh2BG668000 Rh2CG631100 Rh2DG681700
rosa_wichuraiana	Rw2G053820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	459
AciI	CCGC	5 cut(s)	67, 82, 457, 1034, 1091
AclI	AACGTT	1 cut(s)	937
AclWI	GGATC	4 cut(s)	72, 81, 1177, 1190
AcsI	RAATTY	3 cut(s)	35, 273, 742
AcuI	CTGAAG	2 cut(s)	438, 831
AfaI	GTAC	3 cut(s)	327, 387, 860
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	7 cut(s)	470, 566, 669, 742, 770, 799, 1030
AjnI	CCWGG	3 cut(s)	784, 883, 1105
AjuI	GAANNNNNNNTTGG	2 cut(s)	585, 617
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	2 cut(s)	363, 1014
AlwI	GGATC	4 cut(s)	72, 81, 1177, 1190
AlwNI	CAGNNNCTG	1 cut(s)	319
AoxI	GGCC	1 cut(s)	726
ApeKI	GCWGC	2 cut(s)	841, 880
ApoI	RAATTY	3 cut(s)	35, 273, 742
Asp700I	GAANNNNTTC	3 cut(s)	14, 597, 708
AspS9I	GGNCC	1 cut(s)	1118
AsuC2I	CCSGG	2 cut(s)	730, 959
AsuHPI	GGTGA	5 cut(s)	16, 800, 886, 1042, 1091
AvaII	GGWCC	1 cut(s)	1118
BamHI	GGATCC	1 cut(s)	1182
BarI	GAAGNNNNNNTAC	4 cut(s)	546, 578, 1077, 1109
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	2 cut(s)	853, 892
BccI	CCATC	4 cut(s)	118, 171, 608, 693
BciT130I	CCWGG	3 cut(s)	786, 885, 1107
BciVI	GTATCC	1 cut(s)	425
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	2 cut(s)	730, 959
BcoDI	GTCTC	2 cut(s)	363, 1014
BfaI	CTAG	2 cut(s)	747, 1142
BfmI	CTRYAG	3 cut(s)	130, 225, 1122
BfuAI	ACCTGC	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	425
BglII	AGATCT	1 cut(s)	161
BisI	GCNGC	4 cut(s)	842, 881, 1035, 1091
BlsI	GCNGC	4 cut(s)	843, 882, 1036, 1092
BmcAI	AGTACT	1 cut(s)	327
Bme1390I	CCNGG	5 cut(s)	730, 786, 885, 959, 1107
Bme18I	GGWCC	1 cut(s)	1118
BmgT120I	GGNCC	1 cut(s)	1118
BmiI	GGNNCC	3 cut(s)	365, 1119, 1184
BmrFI	CCNGG	5 cut(s)	730, 786, 885, 959, 1107
BmsI	GCATC	2 cut(s)	564, 1123
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	911
BpuMI	CCSGG	2 cut(s)	730, 959
Bsa29I	ATCGAT	3 cut(s)	76, 285, 343
BsaAI	YACGTR	1 cut(s)	1159
BsaJI	CCNNGG	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
BseBI	CCWGG	3 cut(s)	786, 885, 1107
BseCI	ATCGAT	3 cut(s)	76, 285, 343
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	4 cut(s)	141, 182, 592, 784
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	2 cut(s)	250, 522
BseXI	GCAGC	2 cut(s)	853, 892
BsgI	GTGCAG	2 cut(s)	332, 1046
Bsh1236I	CGCG	1 cut(s)	459
Bsh1285I	CGRYCG	1 cut(s)	631
BshFI	GGCC	1 cut(s)	728
BshVI	ATCGAT	3 cut(s)	76, 285, 343
BsiEI	CGRYCG	1 cut(s)	631
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	2 cut(s)	729, 959
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	2 cut(s)	363, 1014
BsmBI	CGTCTC	1 cut(s)	1014
BsmFI	GGGAC	1 cut(s)	557
BsnI	GGCC	1 cut(s)	728
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp1407I	TGTACA	2 cut(s)	385, 858
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	5 cut(s)	67, 82, 457, 1034, 1091
BspANI	GGCC	1 cut(s)	728
BspCNI	CTCAG	2 cut(s)	249, 523
BspDI	ATCGAT	3 cut(s)	76, 285, 343
BspFNI	CGCG	1 cut(s)	459
BspLI	GGNNCC	3 cut(s)	365, 1119, 1184
BspMAI	CTGCAG	3 cut(s)	134, 229, 1126
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	4 cut(s)	72, 81, 1177, 1190
BsrGI	TGTACA	2 cut(s)	385, 858
BssECI	CCNNGG	1 cut(s)	504
BssNAI	GTATAC	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	504
Bst1107I	GTATAC	1 cut(s)	118
Bst2UI	CCWGG	3 cut(s)	786, 885, 1107
Bst4CI	ACNGT	5 cut(s)	281, 637, 673, 874, 904
Bst6I	CTCTTC	2 cut(s)	1012, 1062
BstAUI	TGTACA	2 cut(s)	385, 858
BstBAI	YACGTR	1 cut(s)	1159
BstC8I	GCNNGC	3 cut(s)	22, 86, 839
BstDEI	CTNAG	2 cut(s)	236, 531
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	4 cut(s)	141, 182, 592, 784
BstFNI	CGCG	1 cut(s)	459
BstMAI	GTCTC	2 cut(s)	363, 1014
BstMCI	CGRYCG	1 cut(s)	631
BstMWI	GCNNNNNNNGC	1 cut(s)	734
BstNI	CCWGG	3 cut(s)	786, 885, 1107
BstSCI	CCNGG	5 cut(s)	728, 784, 883, 957, 1105
BstSFI	CTRYAG	3 cut(s)	130, 225, 1122
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	2 cut(s)	853, 892
BstX2I	RGATCY	2 cut(s)	161, 1182
BstYI	RGATCY	2 cut(s)	161, 1182
BstZ17I	GTATAC	1 cut(s)	118
Bsu15I	ATCGAT	3 cut(s)	76, 285, 343
BsuI	GTATCC	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	728
BsuTUI	ATCGAT	3 cut(s)	76, 285, 343
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	4 cut(s)	141, 182, 592, 784
BtsI	GCAGTG	1 cut(s)	1136
BtsIMutI	CAGTG	2 cut(s)	576, 1136
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	3 cut(s)	22, 86, 839
CaiI	CAGNNNCTG	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	1118
ClaI	ATCGAT	3 cut(s)	76, 285, 343
Csp6I	GTAC	3 cut(s)	326, 386, 859
CviAII	CATG	5 cut(s)	154, 505, 856, 862, 1169
CviQI	GTAC	3 cut(s)	326, 386, 859
DdeI	CTNAG	2 cut(s)	236, 531
Eam1104I	CTCTTC	2 cut(s)	1012, 1062
EarI	CTCTTC	2 cut(s)	1012, 1062
Eco130I	CCWWGG	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	1118
Eco57I	CTGAAG	2 cut(s)	438, 831
EcoO109I	RGGNCCY	1 cut(s)	1118
EcoRI	GAATTC	1 cut(s)	742
EcoRII	CCWGG	3 cut(s)	784, 883, 1105
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	1014
FaeI	CATG	5 cut(s)	157, 508, 859, 865, 1172
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	5 cut(s)	153, 504, 855, 861, 1168
FauI	CCCGC	1 cut(s)	89
FauNDI	CATATG	1 cut(s)	1178
FbaI	TGATCA	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	842, 881, 1035, 1091
FokI	GGATG	4 cut(s)	148, 189, 599, 791
Fsp4HI	GCNGC	4 cut(s)	842, 881, 1035, 1091
FspBI	CTAG	2 cut(s)	747, 1142
GluI	GCNGC	4 cut(s)	842, 881, 1035, 1091
HaeIII	GGCC	1 cut(s)	728
HapII	CCGG	2 cut(s)	729, 959
Hin1II	CATG	5 cut(s)	157, 508, 859, 865, 1172
HincII	GTYRAC	1 cut(s)	900
HindII	GTYRAC	1 cut(s)	900
HinfI	GANTC	7 cut(s)	181, 221, 266, 316, 345, 676, 684
HpaII	CCGG	2 cut(s)	729, 959
HphI	GGTGA	5 cut(s)	16, 800, 886, 1042, 1091
Hpy166II	GTNNAC	2 cut(s)	118, 900
Hpy188I	TCNGA	3 cut(s)	42, 166, 850
Hpy188III	TCNNGA	3 cut(s)	641, 747, 983
Hpy8I	GTNNAC	2 cut(s)	118, 900
HpyAV	CCTTC	7 cut(s)	4, 64, 295, 413, 698, 855, 1024
HpyCH4III	ACNGT	5 cut(s)	281, 637, 673, 874, 904
HpyCH4IV	ACGT	3 cut(s)	937, 973, 1158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	734
HpyF3I	CTNAG	2 cut(s)	236, 531
HpySE526I	ACGT	3 cut(s)	937, 973, 1158
Hsp92II	CATG	5 cut(s)	157, 508, 859, 865, 1172
Ksp22I	TGATCA	1 cut(s)	138
Lsp1109I	GCAGC	2 cut(s)	853, 892
LweI	GCATC	2 cut(s)	564, 1123
MaeI	CTAG	2 cut(s)	747, 1142
MaeII	ACGT	3 cut(s)	937, 973, 1158
MaeIII	GTNAC	4 cut(s)	239, 788, 949, 1154
MboII	GAAGA	4 cut(s)	554, 1029, 1039, 1049
MflI	RGATCY	2 cut(s)	161, 1182
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	8 cut(s)	35, 273, 450, 579, 742, 770, 914, 978
MlyI	GAGTC	2 cut(s)	175, 215
MmeI	TCCRAC	1 cut(s)	683
MroXI	GAANNNNTTC	3 cut(s)	14, 597, 708
MseI	TTAA	2 cut(s)	582, 774
MslI	CAYNNNNRTG	1 cut(s)	860
MspI	CCGG	2 cut(s)	729, 959
MspR9I	CCNGG	5 cut(s)	730, 786, 885, 959, 1107
MvaI	CCWGG	3 cut(s)	786, 885, 1107
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	1 cut(s)	734
NciI	CCSGG	2 cut(s)	730, 959
NcoI	CCATGG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	1178
NlaIII	CATG	5 cut(s)	157, 508, 859, 865, 1172
NlaIV	GGNNCC	3 cut(s)	365, 1119, 1184
NmuCI	GTSAC	1 cut(s)	788
PdmI	GAANNNNTTC	3 cut(s)	14, 597, 708
PfeI	GAWTC	5 cut(s)	266, 316, 345, 676, 684
PfoI	TCCNGGA	1 cut(s)	957
PkrI	GCNGC	4 cut(s)	843, 882, 1036, 1092
Ple19I	CGATCG	1 cut(s)	631
PleI	GAGTC	2 cut(s)	175, 215
PpsI	GAGTC	2 cut(s)	175, 215
Ppu21I	YACGTR	1 cut(s)	1159
PpuMI	RGGWCCY	1 cut(s)	1118
Psp1406I	AACGTT	1 cut(s)	937
Psp5II	RGGWCCY	1 cut(s)	1118
Psp6I	CCWGG	3 cut(s)	784, 883, 1105
PspGI	CCWGG	3 cut(s)	784, 883, 1105
PspN4I	GGNNCC	3 cut(s)	365, 1119, 1184
PspPI	GGNCC	1 cut(s)	1118
PspPPI	RGGWCCY	1 cut(s)	1118
PstI	CTGCAG	3 cut(s)	134, 229, 1126
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	161, 1182
PvuI	CGATCG	1 cut(s)	631
RsaI	GTAC	3 cut(s)	327, 387, 860
RsaNI	GTAC	3 cut(s)	326, 386, 859
RseI	CAYNNNNRTG	1 cut(s)	860
SaqAI	TTAA	2 cut(s)	582, 774
SatI	GCNGC	4 cut(s)	842, 881, 1035, 1091
Sau96I	GGNCC	1 cut(s)	1118
ScaI	AGTACT	1 cut(s)	327
SchI	GAGTC	2 cut(s)	175, 215
ScrFI	CCNGG	5 cut(s)	730, 786, 885, 959, 1107
SduI	GDGCHC	1 cut(s)	537
SfaNI	GCATC	2 cut(s)	564, 1123
SfcI	CTRYAG	3 cut(s)	130, 225, 1122
SinI	GGWCC	1 cut(s)	1118
SmiMI	CAYNNNNRTG	1 cut(s)	860
SmlI	CTYRAG	1 cut(s)	890
SmoI	CTYRAG	1 cut(s)	890
Sse9I	AATT	8 cut(s)	35, 273, 450, 579, 742, 770, 914, 978
SsiI	CCGC	5 cut(s)	67, 82, 457, 1034, 1091
SspMI	CTAG	2 cut(s)	747, 1142
StyD4I	CCNGG	5 cut(s)	728, 784, 883, 957, 1105
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	5 cut(s)	281, 637, 673, 874, 904
TaiI	ACGT	3 cut(s)	940, 976, 1161
TaqI	TCGA	6 cut(s)	76, 261, 285, 343, 424, 631
TasI	AATT	8 cut(s)	35, 273, 450, 579, 742, 770, 914, 978
TatI	WGTACW	3 cut(s)	325, 385, 858
TauI	GCSGC	2 cut(s)	1037, 1093
TfiI	GAWTC	5 cut(s)	266, 316, 345, 676, 684
Tru1I	TTAA	2 cut(s)	582, 774
Tru9I	TTAA	2 cut(s)	582, 774
TscAI	CASTG	2 cut(s)	576, 1143
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	2 cut(s)	841, 880
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	6 cut(s)	62, 170, 456, 606, 878, 984
TspRI	CASTG	2 cut(s)	576, 1143
VpaK11BI	GGWCC	1 cut(s)	1118
XapI	RAATTY	3 cut(s)	35, 273, 742
XbaI	TCTAGA	1 cut(s)	746
XmiI	GTMKAC	1 cut(s)	117
XmnI	GAANNNNTTC	3 cut(s)	14, 597, 708
XspI	CTAG	2 cut(s)	747, 1142
ZrmI	AGTACT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.