Rorug02G0576200

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
70076627 .. 70078485
1859 bp
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UTR
Exon/CDS
Intron
Rorug02G0576200.1

Sequence Viewer

Length: 1527 bp
ATGTCTTTTTACTACGGCTGTAATACTACTTCAAATCCTACAGGGTTAAATGTTTCCCTTGTTTGCAACAGTAGTGTCACTGTTTCCTATCTCACACAATCACAAACTAGTGGACTCCCGTTTAGTCCAGTTTCTACTGGGGCATGCGAAAGTGAGGTTCTGGTTCCGGTTTCCGAAACGGCTGTTTTGGCTCTCGATAACAATCAAACAACGATCCAAGAAGCCATCGATGGGGGTTTCGTACTGGGATTGAAGATTGATAATAGTGCATGCAACAATTGTGAGGCATCAGGGGGAAAGTGTGGGATGAACACTACTGATGGTGACTTTATGTGCTTTTGCCAAGATCAGCCCTATGCTGCATGTGGAAGTCGTAAAACAGGTACAAGTTCACCATCACCTGGTTTTGTCACAGGCATTTCAGCTGGTGTTGCTGGGACAGTGGTAGTTGTTTGCTGTCTTACATGCTTATCAAGGAAAAGAATGATCTTCTGCAGTAAATTTTCAAGGAATGAGTTTGATATCGAGGAATTCATAAGGAACAATGGATCGCTTACCCCTCAGCGGTATAGTTATTCAAAGGTGAAGAAAATGACAAATGCATTCCGAGATGAAATAGGGAAAGGAGGATATGGCACTGTATACAAAGGAGTGCTACCTGATGGCCTTGTTGTGGCTGTGAAGATGCTACGCGCATCCAAGGGTAACGGAGAAGAATTTATAAATGAAGTTGCCAGCATTGGTAGAACTTCCCATGTCAATATAGTCACTCTTTTGGGCTTTTGTTATGAAAGAGATAAAAGAGCTCTAATTTACGAATACATGCCTAATGGATCTCTGGATAACTTCATACACAAACAAGGATCTGTTAATGCAAATTGCCGCTTGGAATGGAAAACATTATCTGAAATTGCAGTTGGCATTGCTCGGGGTCTAGAGTACTTGCACCGTGGTTGTAACACAAGAATTTTGCATTTTGACATAAAGCCGCAGAACATTCTTTTGGACAAAGATTTTTGTCCAAAAGTATCTGATTTCGGCCTTGCCAAGCTATGCAAAACGAAGGATAGTATTGTATCGATGATGGGAATGAGAGGAACTGCAGGATATATCGCACCAGAAGTATTTAGTCGAAACTTTGGAGCAGTATCTCACAAATCTGATGTCTACAGCTATGGGATGTTGGTTCTTGAAATGGTTGGAGCAAGAAAGAAATTGAATTCCGGAGTATCCCATACTAGTGAAATGTTTCCACATTACATTTACAAGGATCTAGAGCTAGAGAAGGATGATAGTATTTTGGGGGATATATCAGAGGAGGAAAACAAAATAGCAAGAAAGTTGATATTGATAAGTCTGGGGTGTATTCAGACCAGTCCATCTGATCGGCCATCAATGAGCAAGGTGGTAGAGATGCTAGAAGGTCCCCTTCATTCCTTGCCGATTCCACCAAAGCCTTGCTTGTTTTCGCCTGCAAGATTTGCAGAGGAATCTGTGACCACATCTCAACCATCTGAAACAGGCTAG

Protein Analysis

508

Amino Acids

55.22

Weight (kDa)

6.71

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WAK_assoc PF14380 33 - 117 1.4e-16 Wall-associated receptor kinase C-terminal
PK_Tyr_Ser-Thr PF07714 202 - 473 6.4e-46 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 204 - 471 2.3e-47 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 722
AccB7I CCANNNNNTGG 1 cut(s) 401
AccI GTMKAC 2 cut(s) 642, 1167
AccII CGCG 1 cut(s) 693
AccIII TCCGGA 1 cut(s) 1223
AciI CCGC 3 cut(s) 565, 883, 989
AclWI GGATC 5 cut(s) 208, 556, 841, 871, 1278
AcoI YGGCCR 1 cut(s) 1388
AcsI RAATTY 5 cut(s) 500, 530, 716, 966, 1219
AfaI GTAC 3 cut(s) 243, 385, 941
AfiI CCNNNNNNNGG 4 cut(s) 231, 401, 564, 673
AgsI TTSAA 6 cut(s) 33, 253, 507, 579, 1193, 1219
AhlI ACTAGT 2 cut(s) 107, 1238
AjnI CCWGG 1 cut(s) 400
AjuI GAANNNNNNNTTGG 4 cut(s) 900, 932, 986, 1018
AluBI AGCT 5 cut(s) 425, 806, 1051, 1173, 1279
AluI AGCT 5 cut(s) 425, 806, 1051, 1173, 1279
Alw21I GWGCWC 1 cut(s) 808
AlwI GGATC 5 cut(s) 208, 556, 841, 871, 1278
Ama87I CYCGRG 1 cut(s) 927
Aor13HI TCCGGA 1 cut(s) 1223
AoxI GGCC 3 cut(s) 664, 1039, 1388
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 5 cut(s) 500, 530, 716, 966, 1219
ArsI GACNNNNNNTTYG 2 cut(s) 1149, 1181
Asp700I GAANNNNTTC 1 cut(s) 1248
AspLEI GCGC 1 cut(s) 695
AspS9I GGNCC 1 cut(s) 1424
AsuHPI GGTGA 4 cut(s) 335, 384, 390, 595
AvaI CYCGRG 1 cut(s) 927
AvaII GGWCC 1 cut(s) 1424
BanII GRGCYC 1 cut(s) 808
BarI GAAGNNNNNNTAC 2 cut(s) 13, 45
Bbv12I GWGCWC 1 cut(s) 808
BbvCI CCTCAGC 1 cut(s) 561
BbvI GCAGC 1 cut(s) 346
BccI CCATC 9 cut(s) 224, 233, 314, 403, 656, 1078, 1387, 1399, 1519
BceAI ACGGC 2 cut(s) 31, 195
BciT130I CCWGG 1 cut(s) 402
BciVI GTATCC 1 cut(s) 1240
BcuI ACTAGT 2 cut(s) 107, 1238
BfaI CTAG 7 cut(s) 108, 935, 1239, 1274, 1280, 1418, 1525
BfmI CTRYAG 4 cut(s) 39, 493, 1101, 1168
BfuI GTATCC 1 cut(s) 1240
BisI GCNGC 3 cut(s) 360, 883, 989
BlsI GCNGC 3 cut(s) 361, 884, 990
BmcAI AGTACT 1 cut(s) 941
Bme1390I CCNGG 1 cut(s) 402
Bme18I GGWCC 1 cut(s) 1424
BmeT110I CYCGRG 1 cut(s) 927
BmgT120I GGNCC 1 cut(s) 1424
BmiI GGNNCC 2 cut(s) 165, 1426
BmrFI CCNGG 1 cut(s) 402
BmrI ACTGGG 2 cut(s) 147, 254
BmsI GCATC 4 cut(s) 296, 675, 704, 1404
BmuI ACTGGG 2 cut(s) 147, 254
Bpu10I CCTNAGC 1 cut(s) 561
Bsa29I ATCGAT 2 cut(s) 228, 1079
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 699, 949
BsaWI WCCGGW 2 cut(s) 166, 1223
Bsc4I CCNNNNNNNGG 4 cut(s) 231, 401, 564, 673
Bse1I ACTGG 4 cut(s) 128, 142, 249, 1374
Bse3DI GCAATG 1 cut(s) 921
Bse8I GATNNNNATC 1 cut(s) 201
BseAI TCCGGA 1 cut(s) 1223
BseBI CCWGG 1 cut(s) 402
BseCI ATCGAT 2 cut(s) 228, 1079
BseDI CCNNGG 2 cut(s) 699, 949
BseGI GGATG 4 cut(s) 312, 695, 1185, 1294
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 4 cut(s) 231, 401, 564, 673
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 1 cut(s) 575
BseNI ACTGG 4 cut(s) 128, 142, 249, 1374
BseRI GAGGAG 1 cut(s) 1331
BseXI GCAGC 1 cut(s) 346
BseYI CCCAGC 1 cut(s) 434
Bsh1236I CGCG 1 cut(s) 693
BshFI GGCC 3 cut(s) 666, 1041, 1390
BshVI ATCGAT 2 cut(s) 228, 1079
BsiHKAI GWGCWC 1 cut(s) 808
BsiHKCI CYCGRG 1 cut(s) 927
BsiSI CCGG 2 cut(s) 167, 1224
BslFI GGGAC 2 cut(s) 451, 1410
BslI CCNNNNNNNGG 4 cut(s) 231, 401, 564, 673
BsmFI GGGAC 2 cut(s) 451, 1410
BsmI GAATGC 1 cut(s) 602
BsnI GGCC 3 cut(s) 666, 1041, 1390
BsoBI CYCGRG 1 cut(s) 927
Bsp1286I GDGCHC 1 cut(s) 808
Bsp13I TCCGGA 1 cut(s) 1223
Bsp143I GATC 8 cut(s) 213, 346, 486, 548, 833, 863, 1270, 1384
BspACI CCGC 3 cut(s) 565, 883, 989
BspANI GGCC 3 cut(s) 666, 1041, 1390
BspCNI CTCAG 1 cut(s) 574
BspDI ATCGAT 2 cut(s) 228, 1079
BspEI TCCGGA 1 cut(s) 1223
BspFNI CGCG 1 cut(s) 693
BspLI GGNNCC 2 cut(s) 165, 1426
BspMAI CTGCAG 2 cut(s) 497, 1105
BspPI GGATC 5 cut(s) 208, 556, 841, 871, 1278
BsrDI GCAATG 1 cut(s) 921
BsrI ACTGG 4 cut(s) 128, 142, 249, 1374
BssECI CCNNGG 2 cut(s) 699, 949
BssMI GATC 8 cut(s) 213, 346, 486, 548, 833, 863, 1270, 1384
BssNAI GTATAC 1 cut(s) 643
BssT1I CCWWGG 1 cut(s) 699
Bst1107I GTATAC 1 cut(s) 643
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 5 cut(s) 71, 82, 442, 640, 950
BstAPI GCANNNNNTGC 1 cut(s) 1481
BstC8I GCNNGC 4 cut(s) 145, 271, 736, 1473
BstDEI CTNAG 1 cut(s) 561
BstDSI CCRYGG 1 cut(s) 949
BstF5I GGATG 4 cut(s) 312, 695, 1185, 1294
BstFNI CGCG 1 cut(s) 693
BstHHI GCGC 1 cut(s) 695
BstKTI GATC 8 cut(s) 216, 349, 489, 551, 836, 866, 1273, 1387
BstMBI GATC 8 cut(s) 213, 346, 486, 548, 833, 863, 1270, 1384
BstMWI GCNNNNNNNGC 3 cut(s) 188, 431, 1481
BstNI CCWGG 1 cut(s) 402
BstNSI RCATGY 5 cut(s) 147, 273, 366, 468, 826
BstSCI CCNGG 1 cut(s) 400
BstSFI CTRYAG 4 cut(s) 39, 493, 1101, 1168
BstUI CGCG 1 cut(s) 693
BstV1I GCAGC 1 cut(s) 346
BstX2I RGATCY 3 cut(s) 833, 863, 1270
BstYI RGATCY 3 cut(s) 833, 863, 1270
BstZ17I GTATAC 1 cut(s) 643
Bsu15I ATCGAT 2 cut(s) 228, 1079
BsuI GTATCC 1 cut(s) 1240
BsuRI GGCC 3 cut(s) 666, 1041, 1390
BsuTUI ATCGAT 2 cut(s) 228, 1079
BtgI CCRYGG 1 cut(s) 949
BtsCI GGATG 4 cut(s) 312, 695, 1185, 1294
BtsIMutI CAGTG 3 cut(s) 78, 447, 636
Cac8I GCNNGC 4 cut(s) 145, 271, 736, 1473
CfoI GCGC 1 cut(s) 695
Cfr13I GGNCC 1 cut(s) 1424
ClaI ATCGAT 2 cut(s) 228, 1079
CsiI ACCWGGT 1 cut(s) 400
Csp6I GTAC 3 cut(s) 242, 384, 940
CviAII CATG 6 cut(s) 144, 270, 363, 465, 755, 823
CviQI GTAC 3 cut(s) 242, 384, 940
DdeI CTNAG 1 cut(s) 561
DpnI GATC 8 cut(s) 215, 348, 488, 550, 835, 865, 1272, 1386
DpnII GATC 8 cut(s) 213, 346, 486, 548, 833, 863, 1270, 1384
EaeI YGGCCR 1 cut(s) 1388
Ecl136II GAGCTC 1 cut(s) 806
Eco130I CCWWGG 1 cut(s) 699
Eco24I GRGCYC 1 cut(s) 808
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 1424
Eco53kI GAGCTC 1 cut(s) 806
Eco88I CYCGRG 1 cut(s) 927
EcoICRI GAGCTC 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 1424
EcoRI GAATTC 2 cut(s) 530, 1219
EcoRII CCWGG 1 cut(s) 400
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 699
EcoT22I ATGCAT 1 cut(s) 604
EcoT38I GRGCYC 1 cut(s) 808
ErhI CCWWGG 1 cut(s) 699
FaeI CATG 6 cut(s) 147, 273, 366, 468, 758, 826
FalI AAGNNNNNCTT 4 cut(s) 1413, 1445, 1445, 1477
FaqI GGGAC 2 cut(s) 451, 1410
FatI CATG 6 cut(s) 143, 269, 362, 464, 754, 822
FblI GTMKAC 2 cut(s) 642, 1167
Fnu4HI GCNGC 3 cut(s) 360, 883, 989
FokI GGATG 4 cut(s) 319, 682, 1192, 1301
FriOI GRGCYC 1 cut(s) 808
Fsp4HI GCNGC 3 cut(s) 360, 883, 989
FspBI CTAG 7 cut(s) 108, 935, 1239, 1274, 1280, 1418, 1525
GlaI GCGC 1 cut(s) 694
GluI GCNGC 3 cut(s) 360, 883, 989
GsaI CCCAGC 1 cut(s) 438
HaeIII GGCC 3 cut(s) 666, 1041, 1390
HapII CCGG 2 cut(s) 167, 1224
HhaI GCGC 1 cut(s) 695
Hin1II CATG 6 cut(s) 147, 273, 366, 468, 758, 826
Hin6I GCGC 1 cut(s) 693
HinP1I GCGC 1 cut(s) 693
HinfI GANTC 3 cut(s) 114, 1444, 1490
HpaII CCGG 2 cut(s) 167, 1224
HphI GGTGA 4 cut(s) 335, 384, 390, 595
Hpy166II GTNNAC 4 cut(s) 113, 392, 643, 1168
Hpy188I TCNGA 9 cut(s) 175, 608, 907, 1033, 1162, 1315, 1371, 1384, 1516
Hpy188III TCNNGA 6 cut(s) 194, 839, 935, 1190, 1224, 1274
Hpy8I GTNNAC 4 cut(s) 113, 392, 643, 1168
HpyAV CCTTC 4 cut(s) 1057, 1279, 1415, 1439
HpyCH4III ACNGT 5 cut(s) 71, 82, 442, 640, 950
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 431, 1481
HpyF3I CTNAG 1 cut(s) 561
Hsp92II CATG 6 cut(s) 147, 273, 366, 468, 758, 826
HspAI GCGC 1 cut(s) 693
Kpn2I TCCGGA 1 cut(s) 1223
Kzo9I GATC 8 cut(s) 213, 346, 486, 548, 833, 863, 1270, 1384
LmnI GCTCC 2 cut(s) 1142, 1202
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 4 cut(s) 296, 675, 704, 1404
MabI ACCWGGT 1 cut(s) 400
MaeI CTAG 7 cut(s) 108, 935, 1239, 1274, 1280, 1418, 1525
MaeIII GTNAC 7 cut(s) 76, 323, 409, 704, 766, 956, 1495
MalI GATC 8 cut(s) 215, 348, 488, 550, 835, 865, 1272, 1386
MboI GATC 8 cut(s) 213, 346, 486, 548, 833, 863, 1270, 1384
MboII GAAGA 5 cut(s) 265, 481, 598, 694, 725
MfeI CAATTG 1 cut(s) 277
MflI RGATCY 3 cut(s) 833, 863, 1270
MhlI GDGCHC 1 cut(s) 808
MlyI GAGTC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 1180
MnlI CCTC 9 cut(s) 148, 277, 520, 570, 620, 1088, 1309, 1312, 1480
Mph1103I ATGCAT 1 cut(s) 604
MroI TCCGGA 1 cut(s) 1223
MroXI GAANNNNTTC 1 cut(s) 1248
MseI TTAA 2 cut(s) 47, 870
MslI CAYNNNNRTG 1 cut(s) 1239
MspA1I CMGCKG 2 cut(s) 425, 565
MspI CCGG 2 cut(s) 167, 1224
MspR9I CCNGG 1 cut(s) 402
MunI CAATTG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 602
MvaI CCWGG 1 cut(s) 402
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 3 cut(s) 188, 431, 1481
NdeII GATC 8 cut(s) 213, 346, 486, 548, 833, 863, 1270, 1384
NlaIII CATG 6 cut(s) 147, 273, 366, 468, 758, 826
NlaIV GGNNCC 2 cut(s) 165, 1426
NmuCI GTSAC 5 cut(s) 76, 323, 409, 766, 1495
NsiI ATGCAT 1 cut(s) 604
NspI RCATGY 5 cut(s) 147, 273, 366, 468, 826
PaeI GCATGC 2 cut(s) 147, 273
PctI GAATGC 1 cut(s) 602
PdmI GAANNNNTTC 1 cut(s) 1248
PfeI GAWTC 2 cut(s) 1444, 1490
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 3 cut(s) 361, 884, 990
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PpuMI RGGWCCY 1 cut(s) 1424
PsiI TTATAA 1 cut(s) 722
Psp124BI GAGCTC 1 cut(s) 808
Psp5II RGGWCCY 1 cut(s) 1424
Psp6I CCWGG 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 2 cut(s) 165, 1426
PspPI GGNCC 1 cut(s) 1424
PspPPI RGGWCCY 1 cut(s) 1424
PstI CTGCAG 2 cut(s) 497, 1105
PsuI RGATCY 3 cut(s) 833, 863, 1270
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 3 cut(s) 243, 385, 941
RsaNI GTAC 3 cut(s) 242, 384, 940
RseI CAYNNNNRTG 1 cut(s) 1239
SacI GAGCTC 1 cut(s) 808
SaqAI TTAA 2 cut(s) 47, 870
SatI GCNGC 3 cut(s) 360, 883, 989
Sau3AI GATC 8 cut(s) 213, 346, 486, 548, 833, 863, 1270, 1384
Sau96I GGNCC 1 cut(s) 1424
ScaI AGTACT 1 cut(s) 941
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 1 cut(s) 808
SexAI ACCWGGT 1 cut(s) 400
SfaNI GCATC 4 cut(s) 296, 675, 704, 1404
SfcI CTRYAG 4 cut(s) 39, 493, 1101, 1168
SinI GGWCC 1 cut(s) 1424
SmiMI CAYNNNNRTG 1 cut(s) 1239
SpeI ACTAGT 2 cut(s) 107, 1238
SphI GCATGC 2 cut(s) 147, 273
SsiI CCGC 3 cut(s) 565, 883, 989
SspMI CTAG 7 cut(s) 108, 935, 1239, 1274, 1280, 1418, 1525
SstI GAGCTC 1 cut(s) 808
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 5 cut(s) 71, 82, 442, 640, 950
TaqI TCGA 5 cut(s) 195, 228, 525, 1079, 1132
TatI WGTACW 1 cut(s) 939
TauI GCSGC 2 cut(s) 885, 991
TfiI GAWTC 2 cut(s) 1444, 1490
Tru1I TTAA 2 cut(s) 47, 870
Tru9I TTAA 2 cut(s) 47, 870
TscAI CASTG 3 cut(s) 85, 447, 643
TseFI GTSAC 5 cut(s) 76, 323, 409, 766, 1495
TseI GCWGC 1 cut(s) 359
Tsp45I GTSAC 5 cut(s) 76, 323, 409, 766, 1495
TspDTI ATGAA 7 cut(s) 323, 523, 627, 741, 804, 838, 1421
TspGWI ACGGA 1 cut(s) 723
TspRI CASTG 3 cut(s) 85, 447, 643
Van91I CCANNNNNTGG 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 1424
XapI RAATTY 5 cut(s) 500, 530, 716, 966, 1219
XbaI TCTAGA 2 cut(s) 934, 1273
XceI RCATGY 5 cut(s) 147, 273, 366, 468, 826
XmiI GTMKAC 2 cut(s) 642, 1167
XmnI GAANNNNTTC 1 cut(s) 1248
XspI CTAG 7 cut(s) 108, 935, 1239, 1274, 1280, 1418, 1525
ZrmI AGTACT 1 cut(s) 941
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.