Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006615

Physical Location & Seq

Genomic Coordinates Reverse (-)

70078508 .. 70078897

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0576300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGATGAACTCCCTTGTGCTTCAATCTTTGATTCCTTTCCTCGTGATCACTTCCTTTTTCTCAATCAATCTTCCATTCACTCTGTGTGCCGATGATCCTCAATATGCCTACTGCAGCCAGGCCATCAACTGTGGCAACATCCCTAACATCTCGTACCCCTTTTGGGGAGTTAATCGACCTAACTATTGTGGCCAGCCCGGGTTCGAAATCGAATGCCAAGACAATGTCCCAATGATCAACATGAGAAATATCAACTTCAGAATTCTTGAGATGAACTCGAACTCTAGTAGTACAGATCGGGCTGTCAAAGTTGCTAGGAACGATTATTGGAATACTGTCTGCCCCATTTCTTATGTTAACACCAGCATCGACTTTTCTCTGTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

129

Amino Acids

14.69

Weight (kDa)

4.52

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	38 - 97	3e-17	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27300 AT3G27300 AT3G27300 AT3G27300 AT3G27300 AT5G40760 AT5G40760
fragaria_vesca	FvH4_6g52720 FvH4_6g52720
malus_domestica	MD09G1017200.v1.1 MD17G1017900.v1.1
prunus_persica	Prupe.3G300200_v2.0.a1
pyrus_communis	pycom111g01400 pycom17g01440
rosa_chinensis	RchiOBHm_Chr2g0174331
rosa_multiflora	Rmu_co8509789.1_g000001 Rmu_sc0003649.1_g000038 Rmu_sc0007150.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078290
rosa_rugosa	Rorug02G0576200 Rorug02G0576300
rosa_samantha	Rh2AG657000 Rh2BG668000 Rh2CG631100 Rh2DG681700
rosa_wichuraiana	Rw2G053820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	1 cut(s)	241
AdeI	CACNNNGTG	1 cut(s)	84
AfaI	GTAC	2 cut(s)	155, 292
AfiI	CCNNNNNNNGG	2 cut(s)	163, 164
AgsI	TTSAA	2 cut(s)	23, 385
AjnI	CCWGG	1 cut(s)	117
AlwI	GGATC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	120, 190
ApeKI	GCWGC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	261
AsuC2I	CCSGG	2 cut(s)	198, 199
AsuII	TTCGAA	1 cut(s)	204
AvaI	CYCGRG	1 cut(s)	197
BalI	TGGCCA	1 cut(s)	192
BauI	CACGAG	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	2 cut(s)	45, 234
BcnI	CCSGG	2 cut(s)	198, 199
BfaI	CTAG	2 cut(s)	285, 315
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	3 cut(s)	119, 198, 199
BmeT110I	CYCGRG	1 cut(s)	197
BmrFI	CCNGG	3 cut(s)	119, 198, 199
BmsI	GCATC	1 cut(s)	375
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	2 cut(s)	198, 199
BsaJI	CCNNGG	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 164
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	163, 164
BseXI	GCAGC	1 cut(s)	126
BshFI	GGCC	2 cut(s)	122, 192
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	163, 164
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	122, 192
BsoBI	CYCGRG	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	204
Bsp143I	GATC	4 cut(s)	45, 94, 234, 295
BspANI	GGCC	2 cut(s)	122, 192
BspMAI	CTGCAG	1 cut(s)	116
BspPI	GGATC	1 cut(s)	89
BspT104I	TTCGAA	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	4 cut(s)	45, 94, 234, 295
BssSI	CACGAG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	131, 337
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	138
BstKTI	GATC	4 cut(s)	48, 97, 237, 298
BstMBI	GATC	4 cut(s)	45, 94, 234, 295
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	117, 196, 197
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	122, 192
BtsCI	GGATG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	194
Cfr9I	CCCGGG	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	154, 291
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	5 cut(s)	117, 122, 192, 196, 302
CviKI_1	RGCY	5 cut(s)	117, 122, 192, 196, 302
CviQI	GTAC	2 cut(s)	154, 291
DpnI	GATC	4 cut(s)	47, 96, 236, 297
DpnII	GATC	4 cut(s)	45, 94, 234, 295
DraIII	CACNNNGTG	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	244
FaiI	YATR	3 cut(s)	105, 242, 354
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	240
FbaI	TGATCA	2 cut(s)	45, 234
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	2 cut(s)	285, 315
GluI	GCNGC	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	122, 192
HapII	CCGG	1 cut(s)	198
Hin1II	CATG	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	1 cut(s)	31
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	1 cut(s)	198
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	2 cut(s)	43, 266
Hpy8I	GTNNAC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	131, 337
HpyCH4V	TGCA	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	244
Ksp22I	TGATCA	2 cut(s)	45, 234
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	45, 94, 234, 295
LpnPI	CCDG	5 cut(s)	104, 131, 206, 211, 376
Lsp1109I	GCAGC	1 cut(s)	126
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	2 cut(s)	285, 315
MalI	GATC	4 cut(s)	47, 96, 236, 297
MboI	GATC	4 cut(s)	45, 94, 234, 295
MboII	GAAGA	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	2 cut(s)	261, 385
MluNI	TGGCCA	1 cut(s)	192
MnlI	CCTC	2 cut(s)	50, 108
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	3 cut(s)	171, 357, 388
Msp20I	TGGCCA	1 cut(s)	192
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	3 cut(s)	119, 198, 199
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	119
NciI	CCSGG	2 cut(s)	198, 199
NdeII	GATC	4 cut(s)	45, 94, 234, 295
NlaIII	CATG	1 cut(s)	244
NspV	TTCGAA	1 cut(s)	204
PctI	GAATGC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	31
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	116
PsyI	GACNNNGTC	1 cut(s)	224
RsaI	GTAC	2 cut(s)	155, 292
RsaNI	GTAC	2 cut(s)	154, 291
SaqAI	TTAA	3 cut(s)	171, 357, 388
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	4 cut(s)	45, 94, 234, 295
ScrFI	CCNGG	3 cut(s)	119, 198, 199
SetI	ASST	1 cut(s)	181
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	204
SmaI	CCCGGG	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	261, 385
SspMI	CTAG	2 cut(s)	285, 315
StyD4I	CCNGG	3 cut(s)	117, 196, 197
TaaI	ACNGT	2 cut(s)	131, 337
TaqI	TCGA	5 cut(s)	175, 204, 210, 278, 369
TasI	AATT	2 cut(s)	261, 385
TatI	WGTACW	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	3 cut(s)	171, 357, 388
Tru9I	TTAA	3 cut(s)	171, 357, 388
TseI	GCWGC	1 cut(s)	114
TspDTI	ATGAA	2 cut(s)	20, 287
TspMI	CCCGGG	1 cut(s)	197
Tth111I	GACNNNGTC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	261
XmaI	CCCGGG	1 cut(s)	197
XspI	CTAG	2 cut(s)	285, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.