Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8509789.1

Orthogroup ID

OG0006615

Physical Location & Seq

Genomic Coordinates Reverse (-)

395 .. 3455

Gene Structure 3061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8509789.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgggatcaggagcatggaaaattgagaaaagggatcattttcgaagcgattcctttaaagaagtggataatgtgcttgaaaacgggtctctgtcgattatcgtgctcggcgcatccggtgatcttgccaagaagaagacttttcctgcactcttccacctttttaagcaggggtttctgaatccaaatgaagttcacattttcggctatgcaaggactaagatttctgatgatgagctaagaagccgcatacgtggatatcttatccaaggagcttcgtccaaggagtcggaagatgtaaccaaatttttgcaactgatcaaatatgtgagcggttcttatgatggtgaggagggttttcggctgcttgataaggaaattgcagtgcatgaagtctccaaaaatagtgcagatggaacatctcgcaggctcttttatcttgcacttcctccatcagtatatccttctgtttgcgggatgatcaagaactactgcatgaataaatctgatcttggtggatggactcgtattgttgttgagaagccttttggcaaggatttggaatctgcagagaaactcagtaatcagattggacagttgtttgatgaatcacaaatttaccgtattgatcactatttgggaaaggaattggtgcagaatttgttggtacttcgttttgcaaatagattctttttgcccctttggaaccgagacaacatagagaatgtacagattgtgttcagggaggattttgggactgaaggtcgaggtggatattttgatgaatatggaattatccgcgatattatccaaaatcatctattgcaggttctttgtttggttgccatggaaaagcctgtttcccttaaacctgagcatatccgggatgagaaagtgaaggttcttcaatcggtacttccaattaatgatgatgaagttgttcttggacaatatgatgggtatagagatgatccaactgttcctgaccgctcaaacactcccactttttcaactgtggttctgcgtatacacaatgaaagatgggaaggtgttccattcatactaaaggccggaaaggcattgaattcaagaaaggcagaaataagggttcagtttaaggatgttcctggtgacatattcagatgtaaaaaacaagggaggaatgagttcgtaatacgcttgcaaccttcagaagcaatgtacatgaaacttacagtatgtgttgactattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004345 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005996 GO:0006006 GO:0006081 GO:0006098 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009051 GO:0009117 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019318 GO:0019362 GO:0019637 GO:0019682 GO:0019693 GO:0034641 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051156 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230

Pfam Domains

Protein Families

G6PD_C G6PD_N

Protein Analysis

410

Amino Acids

46.92

Weight (kDa)

7.09

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27300 AT3G27300 AT3G27300 AT3G27300 AT3G27300 AT5G40760 AT5G40760
fragaria_vesca	FvH4_6g52720 FvH4_6g52720
malus_domestica	MD09G1017200.v1.1 MD17G1017900.v1.1
prunus_persica	Prupe.3G300200_v2.0.a1
pyrus_communis	pycom111g01400 pycom17g01440
rosa_chinensis	RchiOBHm_Chr2g0174331
rosa_multiflora	Rmu_co8509789.1_g000001 Rmu_sc0003649.1_g000038 Rmu_sc0007150.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078290
rosa_rugosa	Rorug02G0576200 Rorug02G0576300
rosa_samantha	Rh2AG657000 Rh2BG668000 Rh2CG631100 Rh2DG681700
rosa_wichuraiana	Rw2G053820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	817
AccBSI	CCGCTC	2 cut(s)	333, 990
AccI	GTMKAC	1 cut(s)	1027
AccII	CGCG	1 cut(s)	801
AciI	CCGC	5 cut(s)	247, 333, 474, 799, 988
AclWI	GGATC	3 cut(s)	13, 42, 965
AcsI	RAATTY	4 cut(s)	305, 615, 658, 1084
AcuI	CTGAAG	2 cut(s)	780, 1173
AfaI	GTAC	4 cut(s)	669, 729, 915, 1202
AgsI	TTSAA	5 cut(s)	80, 908, 1011, 1084, 1089
AhdI	GACNNNNNGTC	1 cut(s)	762
AjnI	CCWGG	1 cut(s)	1126
AjuI	GAANNNNNNNTTGG	2 cut(s)	927, 959
AluBI	AGCT	2 cut(s)	238, 275
AluI	AGCT	2 cut(s)	238, 275
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	3 cut(s)	93, 400, 705
AlwI	GGATC	3 cut(s)	13, 42, 965
AoxI	GGCC	1 cut(s)	1068
ApeKI	GCWGC	1 cut(s)	364
ApoI	RAATTY	4 cut(s)	305, 615, 658, 1084
AseI	ATTAAT	1 cut(s)	924
Asp700I	GAANNNNTTC	4 cut(s)	49, 939, 1050, 1166
AspLEI	GCGC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	884
AsuHPI	GGTGA	3 cut(s)	131, 359, 1142
AsuII	TTCGAA	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	6 cut(s)	338, 407, 460, 513, 950, 1035
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	1 cut(s)	1128
BclI	TGATCA	3 cut(s)	318, 480, 628
BcnI	CCSGG	1 cut(s)	884
BcoDI	GTCTC	3 cut(s)	93, 400, 705
BfmI	CTRYAG	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	817
BglI	GCCNNNNNGGC	1 cut(s)	1076
BisI	GCNGC	2 cut(s)	247, 365
BlsI	GCNGC	2 cut(s)	248, 366
Bme1390I	CCNGG	2 cut(s)	884, 1128
BmeRI	GACNNNNNGTC	1 cut(s)	762
BmiI	GGNNCC	1 cut(s)	707
BmrFI	CCNGG	2 cut(s)	884, 1128
BmsI	GCATC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	873
Bpu14I	TTCGAA	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	884
BsaAI	YACGTR	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	268, 282, 846
BsaWI	WCCGGW	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	1203
BseBI	CCWGG	1 cut(s)	1128
BseDI	CCNNGG	3 cut(s)	268, 282, 846
BseGI	GGATG	5 cut(s)	113, 483, 524, 892, 1126
BseMI	GCAATG	1 cut(s)	1203
BseMII	CTCAG	2 cut(s)	592, 864
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	351
BsgI	GTGCAG	3 cut(s)	132, 429, 674
Bsh1236I	CGCG	1 cut(s)	801
BshFI	GGCC	1 cut(s)	1070
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	3 cut(s)	117, 883, 1071
BslFI	GGGAC	1 cut(s)	769
BsmAI	GTCTC	3 cut(s)	93, 400, 705
BsmFI	GGGAC	1 cut(s)	769
BsnI	GGCC	1 cut(s)	1070
Bso31I	GGTCTC	1 cut(s)	93
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp1407I	TGTACA	2 cut(s)	727, 1200
Bsp143I	GATC	8 cut(s)	5, 34, 121, 318, 480, 508, 628, 970
Bsp19I	CCATGG	1 cut(s)	846
BspACI	CCGC	5 cut(s)	247, 333, 474, 799, 988
BspANI	GGCC	1 cut(s)	1070
BspCNI	CTCAG	2 cut(s)	591, 865
BspFNI	CGCG	1 cut(s)	801
BspLI	GGNNCC	1 cut(s)	707
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	817
BspPI	GGATC	3 cut(s)	13, 42, 965
BspT104I	TTCGAA	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	93
BsrBI	CCGCTC	2 cut(s)	333, 990
BsrDI	GCAATG	1 cut(s)	1203
BsrGI	TGTACA	2 cut(s)	727, 1200
BssECI	CCNNGG	3 cut(s)	268, 282, 846
BssMI	GATC	8 cut(s)	5, 34, 121, 318, 480, 508, 628, 970
BssNAI	GTATAC	1 cut(s)	1028
BssT1I	CCWWGG	3 cut(s)	268, 282, 846
Bst1107I	GTATAC	1 cut(s)	1028
Bst2UI	CCWGG	1 cut(s)	1128
Bst4CI	ACNGT	5 cut(s)	597, 623, 979, 1015, 1216
Bst6I	CTCTTC	1 cut(s)	158
BstAUI	TGTACA	2 cut(s)	727, 1200
BstBAI	YACGTR	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	428, 1181
BstDEI	CTNAG	4 cut(s)	219, 239, 578, 873
BstDSI	CCRYGG	1 cut(s)	846
BstF5I	GGATG	5 cut(s)	113, 483, 524, 892, 1126
BstFNI	CGCG	1 cut(s)	801
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	8 cut(s)	8, 37, 124, 321, 483, 511, 631, 973
BstMAI	GTCTC	3 cut(s)	93, 400, 705
BstMBI	GATC	8 cut(s)	5, 34, 121, 318, 480, 508, 628, 970
BstMWI	GCNNNNNNNGC	1 cut(s)	1076
BstNI	CCWGG	1 cut(s)	1128
BstSCI	CCNGG	2 cut(s)	882, 1126
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	1 cut(s)	801
BstV1I	GCAGC	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	143
BstZ17I	GTATAC	1 cut(s)	1028
BsuRI	GGCC	1 cut(s)	1070
BtgI	CCRYGG	1 cut(s)	846
BtsCI	GGATG	5 cut(s)	113, 483, 524, 892, 1126
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	817
Cac8I	GCNNGC	2 cut(s)	428, 1181
CfoI	GCGC	1 cut(s)	113
Csp6I	GTAC	4 cut(s)	668, 728, 914, 1201
CviAII	CATG	5 cut(s)	15, 389, 496, 847, 1204
CviJI	RGCY	9 cut(s)	207, 238, 246, 275, 364, 430, 544, 856, 1070
CviKI_1	RGCY	9 cut(s)	207, 238, 246, 275, 364, 430, 544, 856, 1070
CviQI	GTAC	4 cut(s)	668, 728, 914, 1201
DdeI	CTNAG	4 cut(s)	219, 239, 578, 873
DpnI	GATC	8 cut(s)	7, 36, 123, 320, 482, 510, 630, 972
DpnII	GATC	8 cut(s)	5, 34, 121, 318, 480, 508, 628, 970
DraI	TTTAAA	1 cut(s)	58
DriI	GACNNNNNGTC	1 cut(s)	762
Eam1104I	CTCTTC	1 cut(s)	158
Eam1105I	GACNNNNNGTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	3 cut(s)	268, 282, 846
Eco31I	GGTCTC	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	260
Eco57I	CTGAAG	2 cut(s)	780, 1173
EcoRI	GAATTC	1 cut(s)	1084
EcoRII	CCWGG	1 cut(s)	1126
EcoRV	GATATC	1 cut(s)	260
EcoT14I	CCWWGG	3 cut(s)	268, 282, 846
ErhI	CCWWGG	3 cut(s)	268, 282, 846
FaeI	CATG	5 cut(s)	18, 392, 499, 850, 1207
FalI	AAGNNNNNCTT	2 cut(s)	927, 959
FaqI	GGGAC	1 cut(s)	769
FatI	CATG	5 cut(s)	14, 388, 495, 846, 1203
FauI	CCCGC	1 cut(s)	467
FbaI	TGATCA	3 cut(s)	318, 480, 628
FblI	GTMKAC	1 cut(s)	1027
Fnu4HI	GCNGC	2 cut(s)	247, 365
FokI	GGATG	5 cut(s)	100, 490, 531, 899, 1133
Fsp4HI	GCNGC	2 cut(s)	247, 365
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	2 cut(s)	247, 365
HaeIII	GGCC	1 cut(s)	1070
HapII	CCGG	3 cut(s)	117, 883, 1071
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	5 cut(s)	18, 392, 499, 850, 1207
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	1225
HindII	GTYRAC	1 cut(s)	1225
HinfI	GANTC	7 cut(s)	50, 181, 287, 523, 563, 608, 687
HpaII	CCGG	3 cut(s)	117, 883, 1071
HphI	GGTGA	3 cut(s)	131, 359, 1142
Hpy166II	GTNNAC	3 cut(s)	196, 1028, 1225
Hpy188I	TCNGA	7 cut(s)	180, 229, 292, 508, 588, 1142, 1192
Hpy188III	TCNNGA	4 cut(s)	9, 484, 983, 1089
Hpy8I	GTNNAC	3 cut(s)	196, 1028, 1225
HpyAV	CCTTC	5 cut(s)	474, 755, 892, 1040, 1197
HpyCH4III	ACNGT	5 cut(s)	597, 623, 979, 1015, 1216
HpyCH4IV	ACGT	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1076
HpyF3I	CTNAG	4 cut(s)	219, 239, 578, 873
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	5 cut(s)	18, 392, 499, 850, 1207
HspAI	GCGC	1 cut(s)	111
Ksp22I	TGATCA	3 cut(s)	318, 480, 628
Kzo9I	GATC	8 cut(s)	5, 34, 121, 318, 480, 508, 628, 970
LmnI	GCTCC	2 cut(s)	11, 272
Lsp1109I	GCAGC	1 cut(s)	351
LweI	GCATC	1 cut(s)	122
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	2 cut(s)	298, 1130
MalI	GATC	8 cut(s)	7, 36, 123, 320, 482, 510, 630, 972
MbiI	CCGCTC	2 cut(s)	333, 990
MboI	GATC	8 cut(s)	5, 34, 121, 318, 480, 508, 628, 970
MboII	GAAGA	5 cut(s)	145, 145, 148, 305, 896
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	9 cut(s)	21, 305, 378, 615, 647, 658, 792, 921, 1084
MlyI	GAGTC	2 cut(s)	296, 517
MmeI	TCCRAC	2 cut(s)	270, 998
MnlI	CCTC	6 cut(s)	343, 346, 459, 739, 761, 1152
MroXI	GAANNNNTTC	4 cut(s)	49, 939, 1050, 1166
MseI	TTAA	5 cut(s)	57, 165, 867, 924, 1116
MspI	CCGG	3 cut(s)	117, 883, 1071
MspR9I	CCNGG	2 cut(s)	884, 1128
MvaI	CCWGG	1 cut(s)	1128
MvnI	CGCG	1 cut(s)	801
MwoI	GCNNNNNNNGC	1 cut(s)	1076
NciI	CCSGG	1 cut(s)	884
NcoI	CCATGG	1 cut(s)	846
NdeII	GATC	8 cut(s)	5, 34, 121, 318, 480, 508, 628, 970
NlaIII	CATG	5 cut(s)	18, 392, 499, 850, 1207
NlaIV	GGNNCC	1 cut(s)	707
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	1130
NspV	TTCGAA	1 cut(s)	43
PdmI	GAANNNNTTC	4 cut(s)	49, 939, 1050, 1166
PfeI	GAWTC	5 cut(s)	50, 181, 563, 608, 687
PfoI	TCCNGGA	1 cut(s)	882
PkrI	GCNGC	2 cut(s)	248, 366
PleI	GAGTC	2 cut(s)	295, 517
PpsI	GAGTC	2 cut(s)	295, 517
Ppu21I	YACGTR	1 cut(s)	254
PshBI	ATTAAT	1 cut(s)	924
Psp6I	CCWGG	1 cut(s)	1126
PspGI	CCWGG	1 cut(s)	1126
PspN4I	GGNNCC	1 cut(s)	707
PstI	CTGCAG	1 cut(s)	571
RsaI	GTAC	4 cut(s)	669, 729, 915, 1202
RsaNI	GTAC	4 cut(s)	668, 728, 914, 1201
SaqAI	TTAA	5 cut(s)	57, 165, 867, 924, 1116
SatI	GCNGC	2 cut(s)	247, 365
Sau3AI	GATC	8 cut(s)	5, 34, 121, 318, 480, 508, 628, 970
SchI	GAGTC	2 cut(s)	296, 517
ScrFI	CCNGG	2 cut(s)	884, 1128
SduI	GDGCHC	1 cut(s)	108
SfaNI	GCATC	1 cut(s)	122
SfcI	CTRYAG	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	43
Sse9I	AATT	9 cut(s)	21, 305, 378, 615, 647, 658, 792, 921, 1084
SsiI	CCGC	5 cut(s)	247, 333, 474, 799, 988
StyD4I	CCNGG	2 cut(s)	882, 1126
StyI	CCWWGG	3 cut(s)	268, 282, 846
TaaI	ACNGT	5 cut(s)	597, 623, 979, 1015, 1216
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	3 cut(s)	43, 95, 766
TasI	AATT	9 cut(s)	21, 305, 378, 615, 647, 658, 792, 921, 1084
TatI	WGTACW	2 cut(s)	727, 1200
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	5 cut(s)	50, 181, 563, 608, 687
Tru1I	TTAA	5 cut(s)	57, 165, 867, 924, 1116
Tru9I	TTAA	5 cut(s)	57, 165, 867, 924, 1116
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	1130
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	1130
TspDTI	ATGAA	9 cut(s)	204, 405, 512, 621, 798, 948, 1048, 1050, 1220
TspRI	CASTG	1 cut(s)	390
VspI	ATTAAT	1 cut(s)	924
XapI	RAATTY	4 cut(s)	305, 615, 658, 1084
XmiI	GTMKAC	1 cut(s)	1027
XmnI	GAANNNNTTC	4 cut(s)	49, 939, 1050, 1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.