Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007717

Physical Location & Seq

Genomic Coordinates Forward (+)

10620534 .. 10624618

Gene Structure 4085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28370.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCGGGAATCGATACGCAGAAGCAGCTTCTCTCTCTGATCCGCGATTTCACCTCTGAAAGATCTCGTGGAGAGCAAAGAGTTGTTGGATTGAAGAAGAGAATAGAGATTTTACAATCGGAAGTTGAAGCAGCGAATTCAGAAGTTGAGAAAGCGAAGCGTATCAAAGAAGTAGCGGAAGAGGAGCTTAATGGTTACGAAGTTGAATTGTCTTTGAATGATGCTACGATTCAATCTCTCGAGGCAAGGATTAGTCTTCTTCAGGATGAAGTTACTACTATTGGCAGTGAAGTTGATGCTCTTAAGAACAAGGAAGGATTACTCAGAGATCAGTTTATAAGCCAAATGGAAGAACTGAACAAGGAGATAAGGGAGTTCCAGAAAACAGTAGATTCGAGTTTGAGCAGTGATGATGGTATTGGCATTACAGCAAATGTCAAAGCTTCTGAAGACGGTTCTGGAGCTGATTTAGAAGCTATAAAGGGAATGCTATCTGAAGTAAATTCTCAATTGGCAAAAGAGGAAGAAGGATACCTGGCAGAGCAGAAGATACAAGAACAGCTGCAGAAGGAGCTTGACGACTATGAGAAGAAAATGTCACTCATGGAGGCCATTACAGACAAAACGAATTCAGTGCAAGTTCTCACTAGATATCCTTTAATTCTGTTAGCTGACATTGGCTTCACTTGGGGAGGAGCTGCAAAGGAGATGCCGATGCCAACATTGCGAGGCGGAAAATTTGGAAGTCCTGAGCTTACTTCTTCAGGGAGATCAAGATATGGAGGTGTCTTAGTTAAAAGCCGATCTCACTTGTGGTTACTGGGGAAAAGATTAATATACTCGGGTCTCAAGATGGATCTAAGAAACATACTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CENP-K

Protein Analysis

292

Amino Acids

32.49

Weight (kDa)

4.94

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51430 AT3G28370 AT3G28370 AT3G28370 AT3G28370 AT3G28370
fragaria_vesca	FvH4_6g49740
malus_domestica	MD09G1042000.v1.1 MD17G1043300.v1.1
prunus_persica	Prupe.3G275800_v2.0.a1 Prupe.3G275800_v2.0.a1 Prupe.3G275800_v2.0.a1
pyrus_communis	pycom111g03290
rosa_chinensis	RchiOBHm_Chr2g0169771
rosa_laevigata	RLG00000021901
rosa_multiflora	Rmu_ssc0000389.1_g000028
rosa_roxburghii	Rroxscaffold_2G00081800 Rroxscaffold_5G00351560
rosa_rugosa	Rorug02G0543100
rosa_samantha	Rh2AG615100 Rh2BG627400 Rh2CG596800 Rh2DG638200
rosa_wichuraiana	Rw2G051000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
AccII	CGCG	1 cut(s)	45
AciI	CCGC	4 cut(s)	5, 43, 176, 732
AclWI	GGATC	2 cut(s)	34, 864
AcsI	RAATTY	4 cut(s)	136, 502, 628, 737
AcuI	CTGAAG	4 cut(s)	245, 468, 516, 747
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	5 cut(s)	94, 128, 206, 217, 233
AjnI	CCWGG	1 cut(s)	534
Alw26I	GTCTC	1 cut(s)	851
AlwI	GGATC	2 cut(s)	34, 864
Ama87I	CYCGRG	2 cut(s)	239, 841
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	4 cut(s)	25, 131, 562, 698
ApoI	RAATTY	4 cut(s)	136, 502, 628, 737
AseI	ATTAAT	1 cut(s)	833
AsuHPI	GGTGA	1 cut(s)	43
AvaI	CYCGRG	2 cut(s)	239, 841
BauI	CACGAG	1 cut(s)	66
BbsI	GAAGAC	2 cut(s)	248, 456
BbvI	GCAGC	4 cut(s)	37, 143, 549, 685
BccI	CCATC	2 cut(s)	407, 847
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BciT130I	CCWGG	1 cut(s)	536
BciVI	GTATCC	1 cut(s)	524
BcoDI	GTCTC	1 cut(s)	851
BfaI	CTAG	2 cut(s)	648, 877
BfmI	CTRYAG	1 cut(s)	563
BfrI	CTTAAG	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	524
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	4 cut(s)	26, 132, 563, 699
BlsI	GCNGC	4 cut(s)	27, 133, 564, 700
Bme1390I	CCNGG	1 cut(s)	536
BmeT110I	CYCGRG	2 cut(s)	239, 841
BmrFI	CCNGG	1 cut(s)	536
BmrI	ACTGGG	1 cut(s)	830
BmsI	GCATC	4 cut(s)	211, 286, 699, 705
BmuI	ACTGGG	1 cut(s)	830
BpiI	GAAGAC	2 cut(s)	248, 456
BpmI	CTGGAG	1 cut(s)	480
Bpu10I	CCTNAGC	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	833
Bsa29I	ATCGAT	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	851
Bse1I	ACTGG	1 cut(s)	825
Bse3DI	GCAATG	1 cut(s)	722
BseBI	CCWGG	1 cut(s)	536
BseCI	ATCGAT	1 cut(s)	12
BseGI	GGATG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	2 cut(s)	337, 741
BseNI	ACTGG	1 cut(s)	825
BseRI	GAGGAG	2 cut(s)	197, 708
BseXI	GCAGC	4 cut(s)	37, 143, 549, 685
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	611
BshVI	ATCGAT	1 cut(s)	12
BsiHKCI	CYCGRG	2 cut(s)	239, 841
BsmAI	GTCTC	1 cut(s)	851
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	1 cut(s)	611
Bso31I	GGTCTC	1 cut(s)	851
BsoBI	CYCGRG	2 cut(s)	239, 841
Bsp143I	GATC	6 cut(s)	39, 62, 328, 770, 803, 856
BspACI	CCGC	4 cut(s)	5, 43, 176, 732
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	2 cut(s)	336, 742
BspDI	ATCGAT	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	567
BspPI	GGATC	2 cut(s)	34, 864
BspTI	CTTAAG	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	825
BssMI	GATC	6 cut(s)	39, 62, 328, 770, 803, 856
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	388, 455
Bst6I	CTCTTC	2 cut(s)	92, 174
BstAFI	CTTAAG	1 cut(s)	302
BstDEI	CTNAG	4 cut(s)	323, 750, 790, 860
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	45
BstKTI	GATC	6 cut(s)	42, 65, 331, 773, 806, 859
BstMAI	GTCTC	1 cut(s)	851
BstMBI	GATC	6 cut(s)	39, 62, 328, 770, 803, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 571, 724
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	534
BstSFI	CTRYAG	1 cut(s)	563
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	4 cut(s)	37, 143, 549, 685
BstV2I	GAAGAC	2 cut(s)	248, 456
BstX2I	RGATCY	2 cut(s)	62, 856
BstYI	RGATCY	2 cut(s)	62, 856
Bsu15I	ATCGAT	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	1 cut(s)	611
BsuTUI	ATCGAT	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	2 cut(s)	292, 412
BtsIMutI	CAGTG	3 cut(s)	292, 412, 639
ClaI	ATCGAT	1 cut(s)	12
CviAII	CATG	1 cut(s)	604
DdeI	CTNAG	4 cut(s)	323, 750, 790, 860
DpnI	GATC	6 cut(s)	41, 64, 330, 772, 805, 858
DpnII	GATC	6 cut(s)	39, 62, 328, 770, 803, 856
Eam1104I	CTCTTC	2 cut(s)	92, 174
EarI	CTCTTC	2 cut(s)	92, 174
EciI	GGCGGA	1 cut(s)	747
Eco31I	GGTCTC	1 cut(s)	851
Eco32I	GATATC	1 cut(s)	653
Eco57I	CTGAAG	4 cut(s)	245, 468, 516, 747
Eco88I	CYCGRG	2 cut(s)	239, 841
EcoRI	GAATTC	2 cut(s)	136, 628
EcoRII	CCWGG	1 cut(s)	534
EcoRV	GATATC	1 cut(s)	653
FaeI	CATG	1 cut(s)	607
FaiI	YATR	7 cut(s)	338, 479, 585, 605, 780, 838, 869
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	1 cut(s)	603
Fnu4HI	GCNGC	4 cut(s)	26, 132, 563, 699
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	4 cut(s)	26, 132, 563, 699
FspBI	CTAG	2 cut(s)	648, 877
GluI	GCNGC	4 cut(s)	26, 132, 563, 699
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	611
Hin1II	CATG	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	3 cut(s)	9, 229, 392
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	7 cut(s)	39, 58, 121, 142, 326, 448, 496
Hpy188III	TCNNGA	7 cut(s)	239, 263, 379, 459, 749, 774, 850
HpyAV	CCTTC	3 cut(s)	308, 521, 562
HpyCH4III	ACNGT	2 cut(s)	388, 455
HpyCH4V	TGCA	3 cut(s)	565, 637, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 571, 724
HpyF3I	CTNAG	4 cut(s)	323, 750, 790, 860
Hsp92II	CATG	1 cut(s)	607
Kzo9I	GATC	6 cut(s)	39, 62, 328, 770, 803, 856
LmnI	GCTCC	4 cut(s)	184, 461, 571, 695
LpnPI	CCDG	8 cut(s)	248, 392, 444, 521, 548, 750, 762, 806
Lsp1109I	GCAGC	4 cut(s)	37, 143, 549, 685
LweI	GCATC	4 cut(s)	211, 286, 699, 705
MaeI	CTAG	2 cut(s)	648, 877
MaeIII	GTNAC	4 cut(s)	194, 271, 597, 816
MalI	GATC	6 cut(s)	41, 64, 330, 772, 805, 858
MboI	GATC	6 cut(s)	39, 62, 328, 770, 803, 856
MfeI	CAATTG	1 cut(s)	509
MflI	RGATCY	2 cut(s)	62, 856
MluCI	AATT	7 cut(s)	136, 206, 502, 509, 628, 660, 737
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	8 cut(s)	64, 175, 235, 514, 601, 686, 722, 776
MseI	TTAA	5 cut(s)	189, 303, 659, 795, 833
MspA1I	CMGCKG	1 cut(s)	562
MspCI	CTTAAG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	509
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	25, 571, 724
NdeII	GATC	6 cut(s)	39, 62, 328, 770, 803, 856
NlaIII	CATG	1 cut(s)	607
NmuCI	GTSAC	1 cut(s)	597
PaeR7I	CTCGAG	1 cut(s)	239
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	3 cut(s)	9, 229, 392
PkrI	GCNGC	4 cut(s)	27, 133, 564, 700
PshBI	ATTAAT	1 cut(s)	833
PsiI	TTATAA	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PstI	CTGCAG	1 cut(s)	567
PsuI	RGATCY	2 cut(s)	62, 856
PvuII	CAGCTG	1 cut(s)	562
SaqAI	TTAA	5 cut(s)	189, 303, 659, 795, 833
SatI	GCNGC	4 cut(s)	26, 132, 563, 699
Sau3AI	GATC	6 cut(s)	39, 62, 328, 770, 803, 856
ScrFI	CCNGG	1 cut(s)	536
SfaNI	GCATC	4 cut(s)	211, 286, 699, 705
SfcI	CTRYAG	1 cut(s)	563
Sfr274I	CTCGAG	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	239
SmlI	CTYRAG	3 cut(s)	239, 302, 848
SmoI	CTYRAG	3 cut(s)	239, 302, 848
Sse9I	AATT	7 cut(s)	136, 206, 502, 509, 628, 660, 737
SsiI	CCGC	4 cut(s)	5, 43, 176, 732
SspMI	CTAG	2 cut(s)	648, 877
StyD4I	CCNGG	1 cut(s)	534
TaaI	ACNGT	2 cut(s)	388, 455
TaqI	TCGA	3 cut(s)	12, 240, 395
TasI	AATT	7 cut(s)	136, 206, 502, 509, 628, 660, 737
TfiI	GAWTC	3 cut(s)	9, 229, 392
Tru1I	TTAA	5 cut(s)	189, 303, 659, 795, 833
Tru9I	TTAA	5 cut(s)	189, 303, 659, 795, 833
TscAI	CASTG	3 cut(s)	292, 412, 639
TseFI	GTSAC	1 cut(s)	597
TseI	GCWGC	4 cut(s)	25, 131, 562, 698
Tsp45I	GTSAC	1 cut(s)	597
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	3 cut(s)	292, 412, 639
Vha464I	CTTAAG	1 cut(s)	302
VspI	ATTAAT	1 cut(s)	833
XapI	RAATTY	4 cut(s)	136, 502, 628, 737
XhoI	CTCGAG	1 cut(s)	239
XspI	CTAG	2 cut(s)	648, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.