Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007717

Physical Location & Seq

Genomic Coordinates Forward (+)

67245442 .. 67246311

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0543100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAATACACTATTGTGGTAGCTGAAGCGGCGGATTCCCCGGCTACATTACAGTATCTTGCTCCTTATACAGGAGCAGCTCTGGCTGAATATTTCATGTACCGTGAGCAACACACTTTAATCATTTATGACGATCTCTCCAAACAAGCGCAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCGCCGGGCCGCGAAGCGTATCCGGGAGATGTTTTTTATCTACATTCACGCCTTTTGGAAAGAGCCGCGAAATTAGGTTCTCTTTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCGGGGGATGTTTCGGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGACAAATATTCTTATCTGCTGATTTATTCAATGCTGGAATCAGACCAGCTATTAATGTGGGTATTTCTGTTTCCAGAGTGGGATCGGCAGCTCAAATTAAAGCCATGAAACAAGTAGCTGGAAAATTAAAATTGGAATTGGCGCAATTTGCAGAATTAGAAGCCTTTGCACAATTTGCTTCTGATCTCGATAAAGCTACTCAGAATCAATTGGCAAGAGGTCAACGATTACGTGAGTTGCTCAAACAATCTCAATCAGCCCCCCTTGCGGTAAGGAAATTTCTTGTTGAGTTACGTACTTATTTAAAAACGAATAAACCGCAGTTCCAAGAAATCATATCTTCTACCAAGACATTTACCGAGGAAGCGGAAACCCTTTTGAAAGAAGCTATTCAGGACCAGATGGAACGTTTTCTACTTCAGGAACAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

29.6

Weight (kDa)

5.85

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_ab	PF00006	1 - 147	5.8e-56	ATP synthase alpha/beta family, nucleotide-binding domain
ATP-synt_ab_C	PF00306	154 - 215	8.2e-28	ATP synthase alpha/beta chain, C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51430 AT3G28370 AT3G28370 AT3G28370 AT3G28370 AT3G28370
fragaria_vesca	FvH4_6g49740
malus_domestica	MD09G1042000.v1.1 MD17G1043300.v1.1
prunus_persica	Prupe.3G275800_v2.0.a1 Prupe.3G275800_v2.0.a1 Prupe.3G275800_v2.0.a1
pyrus_communis	pycom111g03290
rosa_chinensis	RchiOBHm_Chr2g0169771
rosa_laevigata	RLG00000021901
rosa_multiflora	Rmu_ssc0000389.1_g000028
rosa_roxburghii	Rroxscaffold_2G00081800 Rroxscaffold_5G00351560
rosa_rugosa	Rorug02G0543100
rosa_samantha	Rh2AG615100 Rh2BG627400 Rh2CG596800 Rh2DG638200
rosa_wichuraiana	Rw2G051000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	198, 254
AciI	CCGC	8 cut(s)	29, 32, 188, 196, 252, 635, 686, 734
AclI	AACGTT	1 cut(s)	775
AclWI	GGATC	1 cut(s)	457
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	2 cut(s)	45, 770
AfaI	GTAC	2 cut(s)	101, 664
AfiI	CCNNNNNNNGG	4 cut(s)	71, 318, 319, 634
AgsI	TTSAA	2 cut(s)	397, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AleI	CACNNNNGTG	1 cut(s)	14
AluBI	AGCT	7 cut(s)	23, 80, 416, 458, 485, 563, 755
AluI	AGCT	7 cut(s)	23, 80, 416, 458, 485, 563, 755
Alw26I	GTCTC	2 cut(s)	174, 302
AlwI	GGATC	1 cut(s)	457
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	77, 455
ApoI	RAATTY	1 cut(s)	644
AseI	ATTAAT	1 cut(s)	420
Asp700I	GAANNNNTTC	2 cut(s)	756, 777
AspLEI	GCGC	2 cut(s)	151, 511
AspS9I	GGNCC	2 cut(s)	193, 763
AsuC2I	CCSGG	3 cut(s)	41, 192, 210
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	763
BbsI	GAAGAC	1 cut(s)	190
BbvI	GCAGC	2 cut(s)	89, 467
BccI	CCATC	2 cut(s)	359, 763
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciVI	GTATCC	1 cut(s)	216
BcnI	CCSGG	3 cut(s)	41, 192, 210
BcoDI	GTCTC	2 cut(s)	174, 302
BfuI	GTATCC	1 cut(s)	216
BisI	GCNGC	5 cut(s)	30, 78, 196, 252, 456
BlsI	GCNGC	5 cut(s)	31, 79, 197, 253, 457
Bme1390I	CCNGG	3 cut(s)	41, 192, 210
Bme18I	GGWCC	1 cut(s)	763
BmgT120I	GGNCC	2 cut(s)	193, 763
BmrFI	CCNGG	3 cut(s)	41, 192, 210
BpiI	GAAGAC	1 cut(s)	190
BpuMI	CCSGG	3 cut(s)	41, 192, 210
BsaAI	YACGTR	2 cut(s)	599, 662
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	39, 726
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 318, 319, 634
BseDI	CCNNGG	2 cut(s)	39, 726
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	4 cut(s)	71, 318, 319, 634
BseMII	CTCAG	1 cut(s)	581
BseXI	GCAGC	2 cut(s)	89, 467
Bsh1236I	CGCG	2 cut(s)	198, 254
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	41, 191, 209
BslI	CCNNNNNNNGG	4 cut(s)	71, 318, 319, 634
BsmAI	GTCTC	2 cut(s)	174, 302
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	133, 449, 550
BspACI	CCGC	8 cut(s)	29, 32, 188, 196, 252, 635, 686, 734
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	580
BspFNI	CGCG	2 cut(s)	198, 254
BspPI	GGATC	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	39, 726
BssMI	GATC	3 cut(s)	133, 449, 550
Bst4CI	ACNGT	2 cut(s)	54, 104
Bst6I	CTCTTC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstBAI	YACGTR	2 cut(s)	599, 662
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	567
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	198, 254
BstHHI	GCGC	2 cut(s)	151, 511
BstKTI	GATC	3 cut(s)	136, 452, 553
BstMAI	GTCTC	2 cut(s)	174, 302
BstMBI	GATC	3 cut(s)	133, 449, 550
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 83, 515, 542, 632
BstSCI	CCNGG	3 cut(s)	39, 190, 208
BstSNI	TACGTA	1 cut(s)	662
BstUI	CGCG	2 cut(s)	198, 254
BstV1I	GCAGC	2 cut(s)	89, 467
BstV2I	GAAGAC	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	2 cut(s)	151, 511
Cfr13I	GGNCC	2 cut(s)	193, 763
Csp6I	GTAC	2 cut(s)	100, 663
CviAII	CATG	2 cut(s)	97, 472
CviQI	GTAC	2 cut(s)	100, 663
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	3 cut(s)	135, 451, 552
DpnII	GATC	3 cut(s)	133, 449, 550
DraI	TTTAAA	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	47
Eco105I	TACGTA	1 cut(s)	662
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	763
Eco57I	CTGAAG	2 cut(s)	45, 770
EcoNI	CCTNNNNNAGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	100, 475
FaiI	YATR	8 cut(s)	69, 98, 129, 287, 336, 473, 704, 799
FatI	CATG	2 cut(s)	96, 471
Fnu4HI	GCNGC	5 cut(s)	30, 78, 196, 252, 456
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	5 cut(s)	30, 78, 196, 252, 456
GlaI	GCGC	2 cut(s)	150, 510
GluI	GCNGC	5 cut(s)	30, 78, 196, 252, 456
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	3 cut(s)	41, 191, 209
HhaI	GCGC	2 cut(s)	151, 511
Hin1II	CATG	2 cut(s)	100, 475
Hin6I	GCGC	2 cut(s)	149, 509
HinP1I	GCGC	2 cut(s)	149, 509
HincII	GTYRAC	1 cut(s)	590
HindII	GTYRAC	1 cut(s)	590
HinfI	GANTC	3 cut(s)	35, 405, 571
HpaII	CCGG	3 cut(s)	41, 191, 209
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	3 cut(s)	410, 550, 570
Hpy188III	TCNNGA	4 cut(s)	441, 554, 761, 788
Hpy8I	GTNNAC	1 cut(s)	590
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	54, 104
HpyCH4IV	ACGT	3 cut(s)	598, 661, 775
HpyCH4V	TGCA	2 cut(s)	518, 536
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 83, 515, 542, 632
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	3 cut(s)	598, 661, 775
Hsp92II	CATG	2 cut(s)	100, 475
HspAI	GCGC	2 cut(s)	149, 509
Kzo9I	GATC	3 cut(s)	133, 449, 550
LmnI	GCTCC	2 cut(s)	67, 74
Lsp1109I	GCAGC	2 cut(s)	89, 467
MaeII	ACGT	3 cut(s)	598, 661, 775
MaeIII	GTNAC	1 cut(s)	657
MalI	GATC	3 cut(s)	135, 451, 552
MboI	GATC	3 cut(s)	133, 449, 550
MboII	GAAGA	3 cut(s)	164, 195, 699
MfeI	CAATTG	1 cut(s)	575
MnlI	CCTC	2 cut(s)	578, 721
MroXI	GAANNNNTTC	2 cut(s)	756, 777
MseI	TTAA	5 cut(s)	119, 420, 465, 494, 671
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	3 cut(s)	41, 191, 209
MspR9I	CCNGG	3 cut(s)	41, 192, 210
MunI	CAATTG	1 cut(s)	575
MvnI	CGCG	2 cut(s)	198, 254
MwoI	GCNNNNNNNGC	5 cut(s)	29, 83, 515, 542, 632
NciI	CCSGG	3 cut(s)	41, 192, 210
NdeII	GATC	3 cut(s)	133, 449, 550
NlaIII	CATG	2 cut(s)	100, 475
OliI	CACNNNNGTG	1 cut(s)	14
PdmI	GAANNNNTTC	2 cut(s)	756, 777
PfeI	GAWTC	3 cut(s)	35, 405, 571
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	5 cut(s)	31, 79, 197, 253, 457
Ppu21I	YACGTR	2 cut(s)	599, 662
PshBI	ATTAAT	1 cut(s)	420
Psp1406I	AACGTT	1 cut(s)	775
PspPI	GGNCC	2 cut(s)	193, 763
PsrI	GAACNNNNNNTAC	2 cut(s)	765, 797
RsaI	GTAC	2 cut(s)	101, 664
RsaNI	GTAC	2 cut(s)	100, 663
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	5 cut(s)	119, 420, 465, 494, 671
SatI	GCNGC	5 cut(s)	30, 78, 196, 252, 456
Sau3AI	GATC	3 cut(s)	133, 449, 550
Sau96I	GGNCC	2 cut(s)	193, 763
ScrFI	CCNGG	3 cut(s)	41, 192, 210
SinI	GGWCC	1 cut(s)	763
SmiMI	CAYNNNNRTG	1 cut(s)	14
SnaBI	TACGTA	1 cut(s)	662
SsiI	CCGC	8 cut(s)	29, 32, 188, 196, 252, 635, 686, 734
SspI	AATATT	2 cut(s)	92, 375
StyD4I	CCNGG	3 cut(s)	39, 190, 208
TaaI	ACNGT	2 cut(s)	54, 104
TaiI	ACGT	3 cut(s)	601, 664, 778
TaqI	TCGA	1 cut(s)	555
TauI	GCSGC	3 cut(s)	32, 198, 254
TfiI	GAWTC	3 cut(s)	35, 405, 571
Tru1I	TTAA	5 cut(s)	119, 420, 465, 494, 671
Tru9I	TTAA	5 cut(s)	119, 420, 465, 494, 671
TseI	GCWGC	2 cut(s)	77, 455
TspDTI	ATGAA	2 cut(s)	85, 488
VpaK11BI	GGWCC	1 cut(s)	763
VspI	ATTAAT	1 cut(s)	420
XagI	CCTNNNNNAGG	1 cut(s)	69
XapI	RAATTY	1 cut(s)	644
XmnI	GAANNNNTTC	2 cut(s)	756, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.