Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007717

Physical Location & Seq

Genomic Coordinates Reverse (-)

79149024 .. 79150905

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGGGAAGCGACCCCCGGAAGCACCTCATGAACTTGATTCACGACTTCGCCTTGGAGAAGTCTCAGGGAGAGCGAAGAGTGGTCGGCCTGAGGAAGCGAATCGAAGAGCTGACGTCTGAGCTTGAGGTCAGAAATGCGGAGCTTGAAGAAGCCAAGCGCACCAAGGAGTCTATTGAGCAAGAGGTTCGAGGCTACGAAGTTGAATTGGCTATGAATGAAGCTACTATTCAAACGCTTGAGTCAAGGATTTCACTGACGCAAGAGGAGGTTTCCACAGTTGGATCTAACTCGGAAGCTCTTAAGAACAAAGAAGCTGCTGCACGAGATGAGTTCATAAGCCAAATGTTTGAGCTAAACTCTAAGATAAGGAAGTTCCAAGAGTCAATTGCTGGGAAAATTCATGAGGAGAATTATATGGAAACTGAAGCTGGTGATGAAGGTCAGGAACTAGTAAGGGAGGAGGTTTCTGAGGTATCTTTAAGAGCACTTGAGGAAATGCTTGCCTGTGTTGTATCTGAGACAGCTAAAGTAGAAGAAGAATACAAATCAGAGCAGAATATTCAAAAGCAAGTCCAGCAGGAGTTGGTTGATTGTGAAAGGAAGGTATTCCTGATGGAGGAGACATTGAACGCAACAAAGGAATTGCAAGATTTGACAAGATATCCTTTTCAAGAGTGCATTGATTACCAAAATTACTCAATATTTAGCGCTATATACTCCCCTAGAACACGGAAAATTCTAAATCCAAAGAAAATCATTGTTTACATAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

29.85

Weight (kDa)

4.83

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51430 AT3G28370 AT3G28370 AT3G28370 AT3G28370 AT3G28370
fragaria_vesca	FvH4_6g49740
malus_domestica	MD09G1042000.v1.1 MD17G1043300.v1.1
prunus_persica	Prupe.3G275800_v2.0.a1 Prupe.3G275800_v2.0.a1 Prupe.3G275800_v2.0.a1
pyrus_communis	pycom111g03290
rosa_chinensis	RchiOBHm_Chr2g0169771
rosa_laevigata	RLG00000021901
rosa_multiflora	Rmu_ssc0000389.1_g000028
rosa_roxburghii	Rroxscaffold_2G00081800 Rroxscaffold_5G00351560
rosa_rugosa	Rorug02G0543100
rosa_samantha	Rh2AG615100 Rh2BG627400 Rh2CG596800 Rh2DG638200
rosa_wichuraiana	Rw2G051000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	119
AciI	CCGC	2 cut(s)	5, 140
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	399, 738
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	1 cut(s)	116
AfeI	AGCGCT	1 cut(s)	712
AfiI	CCNNNNNNNGG	1 cut(s)	619
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	6 cut(s)	149, 206, 233, 566, 631, 674
AhlI	ACTAGT	1 cut(s)	451
AluBI	AGCT	9 cut(s)	112, 124, 145, 224, 299, 317, 355, 431, 527
AluI	AGCT	9 cut(s)	112, 124, 145, 224, 299, 317, 355, 431, 527
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	3 cut(s)	69, 515, 617
AlwI	GGATC	1 cut(s)	292
Aor51HI	AGCGCT	1 cut(s)	712
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	317, 320
ApoI	RAATTY	2 cut(s)	399, 738
Asp700I	GAANNNNTTC	1 cut(s)	608
AspLEI	GCGC	2 cut(s)	162, 713
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	446
AxyI	CCTNAGG	1 cut(s)	92
BauI	CACGAG	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	2 cut(s)	304, 307
BccI	CCATC	1 cut(s)	610
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	3 cut(s)	69, 515, 617
BcuI	ACTAGT	1 cut(s)	451
BfaI	CTAG	2 cut(s)	452, 726
BfoI	RGCGCY	1 cut(s)	714
BfrI	CTTAAG	1 cut(s)	302
BisI	GCNGC	2 cut(s)	318, 321
BlsI	GCNGC	2 cut(s)	319, 322
Bme1390I	CCNGG	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpuEI	CTTGAG	3 cut(s)	146, 260, 512
BpuMI	CCSGG	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	17, 54, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse21I	CCTNAGG	1 cut(s)	92
BseDI	CCNNGG	3 cut(s)	17, 54, 165
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMII	CTCAG	5 cut(s)	80, 83, 111, 462, 510
BseRI	GAGGAG	4 cut(s)	281, 422, 476, 635
BseXI	GCAGC	2 cut(s)	304, 307
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	490
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmAI	GTCTC	3 cut(s)	69, 515, 617
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	1 cut(s)	284
BspACI	CCGC	2 cut(s)	5, 140
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	5 cut(s)	79, 84, 112, 463, 511
BspHI	TCATGA	2 cut(s)	30, 403
BspPI	GGATC	1 cut(s)	292
BspQI	GCTCTTC	1 cut(s)	102
BspTI	CTTAAG	1 cut(s)	302
BssECI	CCNNGG	3 cut(s)	17, 54, 165
BssMI	GATC	1 cut(s)	284
BssNI	GRCGYC	1 cut(s)	116
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	2 cut(s)	54, 165
Bst2BI	CACGAG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	2 cut(s)	73, 102
BstACI	GRCGYC	1 cut(s)	116
BstAFI	CTTAAG	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	6 cut(s)	66, 92, 120, 363, 471, 519
BstENI	CCTNNNNNAGG	1 cut(s)	617
BstH2I	RGCGCY	1 cut(s)	714
BstHHI	GCGC	2 cut(s)	162, 713
BstKTI	GATC	1 cut(s)	287
BstMAI	GTCTC	3 cut(s)	69, 515, 617
BstMBI	GATC	1 cut(s)	284
BstMWI	GCNNNNNNNGC	1 cut(s)	577
BstSCI	CCNGG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	304, 307
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
Bsu36I	CCTNAGG	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	504
CciI	TCATGA	2 cut(s)	30, 403
CfoI	GCGC	2 cut(s)	162, 713
CseI	GACGC	1 cut(s)	268
CviAII	CATG	2 cut(s)	31, 404
DdeI	CTNAG	6 cut(s)	66, 92, 120, 363, 471, 519
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
Eam1104I	CTCTTC	2 cut(s)	73, 102
EarI	CTCTTC	2 cut(s)	73, 102
Eco130I	CCWWGG	2 cut(s)	54, 165
Eco32I	GATATC	1 cut(s)	665
Eco47III	AGCGCT	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	447
Eco81I	CCTNAGG	1 cut(s)	92
EcoNI	CCTNNNNNAGG	1 cut(s)	617
EcoRV	GATATC	1 cut(s)	665
EcoT14I	CCWWGG	2 cut(s)	54, 165
ErhI	CCWWGG	2 cut(s)	54, 165
FaeI	CATG	2 cut(s)	34, 407
FaiI	YATR	9 cut(s)	32, 215, 338, 405, 417, 419, 716, 718, 770
FalI	AAGNNNNNCTT	2 cut(s)	652, 684
FatI	CATG	2 cut(s)	30, 403
Fnu4HI	GCNGC	2 cut(s)	318, 321
Fsp4HI	GCNGC	2 cut(s)	318, 321
FspBI	CTAG	2 cut(s)	452, 726
GlaI	GCGC	2 cut(s)	161, 712
GluI	GCNGC	2 cut(s)	318, 321
GsaI	CCCAGC	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	714
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	1 cut(s)	19
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	2 cut(s)	162, 713
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	34, 407
Hin6I	GCGC	2 cut(s)	160, 711
HinP1I	GCGC	2 cut(s)	160, 711
HinfI	GANTC	5 cut(s)	40, 102, 170, 242, 383
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	1 cut(s)	766
Hpy188I	TCNGA	6 cut(s)	121, 134, 295, 472, 520, 553
Hpy188III	TCNNGA	6 cut(s)	31, 44, 404, 446, 613, 674
Hpy8I	GTNNAC	1 cut(s)	766
HpyAV	CCTTC	2 cut(s)	434, 598
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	323, 649, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	577
HpyF3I	CTNAG	6 cut(s)	66, 92, 120, 363, 471, 519
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	34, 407
HspAI	GCGC	2 cut(s)	160, 711
Kzo9I	GATC	1 cut(s)	284
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	2 cut(s)	304, 307
MaeI	CTAG	2 cut(s)	452, 726
MaeII	ACGT	1 cut(s)	116
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	5 cut(s)	90, 119, 161, 548, 551
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	490
MluCI	AATT	7 cut(s)	206, 387, 399, 412, 644, 694, 738
MlyI	GAGTC	3 cut(s)	179, 251, 392
MmeI	TCCRAC	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	608
MseI	TTAA	3 cut(s)	303, 482, 775
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	19
MunI	CAATTG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	577
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	34, 407
PagI	TCATGA	2 cut(s)	30, 403
PciSI	GCTCTTC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	2 cut(s)	40, 102
PkrI	GCNGC	2 cut(s)	319, 322
PleI	GAGTC	3 cut(s)	178, 250, 391
PpsI	GAGTC	3 cut(s)	178, 250, 391
PspFI	CCCAGC	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	303, 482, 775
SatI	GCNGC	2 cut(s)	318, 321
Sau3AI	GATC	1 cut(s)	284
SchI	GAGTC	3 cut(s)	179, 251, 392
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	490
SmlI	CTYRAG	4 cut(s)	125, 239, 302, 491
SmoI	CTYRAG	4 cut(s)	125, 239, 302, 491
SpeI	ACTAGT	1 cut(s)	451
Sse9I	AATT	7 cut(s)	206, 387, 399, 412, 644, 694, 738
SsiI	CCGC	2 cut(s)	5, 140
SspI	AATATT	2 cut(s)	562, 705
SspMI	CTAG	2 cut(s)	452, 726
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	2 cut(s)	54, 165
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	2 cut(s)	105, 190
TasI	AATT	7 cut(s)	206, 387, 399, 412, 644, 694, 738
TfiI	GAWTC	2 cut(s)	40, 102
Tru1I	TTAA	3 cut(s)	303, 482, 775
Tru9I	TTAA	3 cut(s)	303, 482, 775
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	2 cut(s)	317, 320
TspDTI	ATGAA	6 cut(s)	47, 230, 234, 325, 392, 453
TspGWI	ACGGA	1 cut(s)	748
TspRI	CASTG	1 cut(s)	261
Vha464I	CTTAAG	1 cut(s)	302
XagI	CCTNNNNNAGG	1 cut(s)	617
XapI	RAATTY	2 cut(s)	399, 738
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	2 cut(s)	452, 726
ZraI	GACGTC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.