Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007717

Physical Location & Seq

Genomic Coordinates Reverse (-)

77226338 .. 77232012

Gene Structure 5675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG596800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGACTGGAATAGCGCGCCCTTATATAAAACGACGAGTCACTCAGATCGTCTCTCAGCACAAACGGAAGCGAAGCAGAGAGTCAAGTCGGTCAGTGATGGCGGGAAGCGACCCCCGGAAGCACCTCATGAACTTGATTCACGACTTCGCCTCCGAGAAGTCTCAGAGAGAGCGAAGAGTGGTCGGCCTGAGGAAGCGAATCGAAGAGCTGACGTCTGAGCTTGAGGTCAGAAATGCAGAGCTTGAAGAAGCCAAGCGCACCAAGGAGTCTATTGAGCAAGAGGTTCGAGGCTACGAAGTTGAATTGGCTATGAATGAAGCTACGATTCAAACGCTTGAGTCAAGGATTTTGCTGACGCAAGAGGAGGTTTCCACAGTTGGATCTAACTTGGAAGCTCTTAAGAACAAAGAAGCTGCTGCACGAGATGAGTTCATAAGCCAAATGTTTGAGCTAAACTCTAAGATAAGGAAGTTCCAAGAGTCAATTGCTGGGAAAATTCATGAGGAGAATTATATGGAAACTGAAGCTGGTGATGAAGGTCAGGAACTAGTAAGGGAGGAGGTTTCTGAGGTATCTTTAAGAGCACTTGAGGACATGCTTGCCTGTGTTGTATCTGAGACAGCTAAAGTAGAAGAAGAATACAAATCAGAACAGAATATTCAAAAGCAAGTAAGAAAGCGTTCCTTGAAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

26.72

Weight (kDa)

6.0

Isoelectric Point (pI)

68.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51430 AT3G28370 AT3G28370 AT3G28370 AT3G28370 AT3G28370
fragaria_vesca	FvH4_6g49740
malus_domestica	MD09G1042000.v1.1 MD17G1043300.v1.1
prunus_persica	Prupe.3G275800_v2.0.a1 Prupe.3G275800_v2.0.a1 Prupe.3G275800_v2.0.a1
pyrus_communis	pycom111g03290
rosa_chinensis	RchiOBHm_Chr2g0169771
rosa_laevigata	RLG00000021901
rosa_multiflora	Rmu_ssc0000389.1_g000028
rosa_roxburghii	Rroxscaffold_2G00081800 Rroxscaffold_5G00351560
rosa_rugosa	Rorug02G0543100
rosa_samantha	Rh2AG615100 Rh2BG627400 Rh2CG596800 Rh2DG638200
rosa_wichuraiana	Rw2G051000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	215
AccII	CGCG	1 cut(s)	16
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	543
AcyI	GRCGYC	1 cut(s)	212
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	245, 302, 329, 662, 688
AhlI	ACTAGT	1 cut(s)	547
AluBI	AGCT	9 cut(s)	208, 220, 241, 320, 395, 413, 451, 527, 623
AluI	AGCT	9 cut(s)	208, 220, 241, 320, 395, 413, 451, 527, 623
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	3 cut(s)	55, 165, 611
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	413, 416
ApoI	RAATTY	1 cut(s)	495
Asp700I	GAANNNNTTC	1 cut(s)	679
AspLEI	GCGC	3 cut(s)	16, 18, 258
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	542
AxyI	CCTNAGG	1 cut(s)	188
BauI	CACGAG	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	2 cut(s)	400, 403
BccI	CCATC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	3 cut(s)	55, 165, 611
BcuI	ACTAGT	1 cut(s)	547
BfaI	CTAG	1 cut(s)	548
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	2 cut(s)	414, 417
BlsI	GCNGC	2 cut(s)	415, 418
Bme1390I	CCNGG	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
BpuEI	CTTGAG	3 cut(s)	242, 356, 608
BpuMI	CCSGG	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	113, 261
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bse1I	ACTGG	1 cut(s)	10
Bse21I	CCTNAGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	113, 261
BseMII	CTCAG	7 cut(s)	56, 68, 176, 179, 207, 558, 606
BseNI	ACTGG	1 cut(s)	10
BsePI	GCGCGC	1 cut(s)	14
BseRI	GAGGAG	3 cut(s)	377, 518, 572
BseXI	GCAGC	2 cut(s)	400, 403
BseYI	CCCAGC	1 cut(s)	488
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	115
BsmAI	GTCTC	3 cut(s)	55, 165, 611
BsmBI	CGTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	2 cut(s)	45, 380
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	7 cut(s)	55, 67, 175, 180, 208, 559, 607
BspFNI	CGCG	1 cut(s)	16
BspHI	TCATGA	2 cut(s)	126, 499
BspPI	GGATC	1 cut(s)	388
BspQI	GCTCTTC	1 cut(s)	198
BspTI	CTTAAG	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	113, 261
BssHII	GCGCGC	1 cut(s)	14
BssMI	GATC	2 cut(s)	45, 380
BssNI	GRCGYC	1 cut(s)	212
BssSI	CACGAG	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	376, 693
Bst6I	CTCTTC	2 cut(s)	169, 198
BstACI	GRCGYC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	16, 600
BstDEI	CTNAG	8 cut(s)	42, 54, 162, 188, 216, 459, 567, 615
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	3 cut(s)	16, 18, 258
BstKTI	GATC	2 cut(s)	48, 383
BstMAI	GTCTC	3 cut(s)	55, 165, 611
BstMBI	GATC	2 cut(s)	45, 380
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	113
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	400, 403
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
Bsu36I	CCTNAGG	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	16, 600
CciI	TCATGA	2 cut(s)	126, 499
CfoI	GCGC	3 cut(s)	16, 18, 258
CseI	GACGC	1 cut(s)	364
CviAII	CATG	3 cut(s)	127, 500, 595
DdeI	CTNAG	8 cut(s)	42, 54, 162, 188, 216, 459, 567, 615
DpnI	GATC	2 cut(s)	47, 382
DpnII	GATC	2 cut(s)	45, 380
Eam1104I	CTCTTC	2 cut(s)	169, 198
EarI	CTCTTC	2 cut(s)	169, 198
Eco130I	CCWWGG	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	543
Eco81I	CCTNAGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	3 cut(s)	130, 503, 598
FaiI	YATR	9 cut(s)	24, 26, 128, 311, 434, 501, 513, 515, 596
FalI	AAGNNNNNCTT	1 cut(s)	668
FatI	CATG	3 cut(s)	126, 499, 594
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	414, 417
Fsp4HI	GCNGC	2 cut(s)	414, 417
FspBI	CTAG	1 cut(s)	548
GlaI	GCGC	3 cut(s)	15, 17, 257
GluI	GCNGC	2 cut(s)	414, 417
GsaI	CCCAGC	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	115
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	3 cut(s)	16, 18, 258
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	130, 503, 598
Hin6I	GCGC	3 cut(s)	14, 16, 256
HinP1I	GCGC	3 cut(s)	14, 16, 256
HinfI	GANTC	8 cut(s)	36, 80, 136, 198, 266, 325, 338, 479
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	1 cut(s)	542
Hpy188I	TCNGA	8 cut(s)	45, 154, 165, 217, 230, 568, 616, 649
Hpy188III	TCNNGA	4 cut(s)	127, 140, 500, 542
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	2 cut(s)	376, 693
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	236, 419
HpyF3I	CTNAG	8 cut(s)	42, 54, 162, 188, 216, 459, 567, 615
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	130, 503, 598
HspAI	GCGC	3 cut(s)	14, 16, 256
Kzo9I	GATC	2 cut(s)	45, 380
LguI	GCTCTTC	1 cut(s)	198
LpnPI	CCDG	6 cut(s)	128, 200, 474, 513, 527, 616
Lsp1109I	GCAGC	2 cut(s)	400, 403
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	47, 382
MboI	GATC	2 cut(s)	45, 380
MboII	GAAGA	5 cut(s)	186, 215, 257, 644, 647
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	4 cut(s)	302, 483, 495, 508
MlyI	GAGTC	5 cut(s)	45, 89, 275, 347, 488
MmeI	TCCRAC	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	679
MseI	TTAA	2 cut(s)	399, 578
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	115
MunI	CAATTG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	16
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	2 cut(s)	45, 380
NlaIII	CATG	3 cut(s)	130, 503, 598
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	598
PagI	TCATGA	2 cut(s)	126, 499
PauI	GCGCGC	1 cut(s)	14
PciSI	GCTCTTC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	679
PfeI	GAWTC	3 cut(s)	136, 198, 325
PkrI	GCNGC	2 cut(s)	415, 418
PleI	GAGTC	5 cut(s)	44, 88, 274, 346, 487
PpsI	GAGTC	5 cut(s)	44, 88, 274, 346, 487
PspFI	CCCAGC	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	380
PteI	GCGCGC	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	399, 578
SatI	GCNGC	2 cut(s)	414, 417
Sau3AI	GATC	2 cut(s)	45, 380
SchI	GAGTC	5 cut(s)	45, 89, 275, 347, 488
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	586
SmlI	CTYRAG	4 cut(s)	221, 335, 398, 587
SmoI	CTYRAG	4 cut(s)	221, 335, 398, 587
SpeI	ACTAGT	1 cut(s)	547
Sse9I	AATT	4 cut(s)	302, 483, 495, 508
SsiI	CCGC	1 cut(s)	101
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	1 cut(s)	548
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	376, 693
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	201, 286
TaqII	GACCGA	1 cut(s)	78
TasI	AATT	4 cut(s)	302, 483, 495, 508
TfiI	GAWTC	3 cut(s)	136, 198, 325
Tru1I	TTAA	2 cut(s)	399, 578
Tru9I	TTAA	2 cut(s)	399, 578
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	413, 416
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	6 cut(s)	143, 326, 330, 421, 488, 549
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	99
Vha464I	CTTAAG	1 cut(s)	398
XapI	RAATTY	1 cut(s)	495
XceI	RCATGY	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	679
XspI	CTAG	1 cut(s)	548
ZraI	GACGTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.