FvH4_6g49740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007717
Physical Location & Seq
Reverse (-)
37187530 .. 37192543
5014 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49740.t1

Sequence Viewer

Length: 795 bp
ATGGCGGGAAGCGACGCAAGGAAGCACCTCATGAACTTGATTCACGACTTCACCTCCGAGAAGTCTCAGGGAGAGCGAAGAGTGGTCGGCCTGAGGAAGCGAATCGAAGAGCTTACGTCAGAGCTTGAGGTCAGAAATGCGGAGCTCGAAGAGGCCAAGCGCATCAAGGAGTCGATTGAGCAAGAGGTTCGAGGCTACGAAGTTGAATTGGCTATGAATGAAGCTACGATTCAAACGCTGGAGTCCAGGATTTCGCTGACGCAAGAGGAGGTTTCGGCAGTTGGATCTGAATTGGAAGCTCTTAAGAACAAAGAAGCTGCTGCACGAGATGAGTTCATAAGCCAGATGTTTGAGCTCAACTCTAAGATAAGGGAGTTCCAAGAGTCAATTGCTGCGAAAATTCATGAGGAGAATTATATGGAAATTGAAGCTGGTGATGATGGTCATGAACTAATAAGGGAGGAGGTCTGTGAGGTATCTTTAAGAGAACTTGAGGAAATGCTTGCCTGTGTTGTATCTGAGACAGCTAAAGTTGAAGAAGAATACAAATCAGAGCAGAATATTCAAAAGCAGGTCCAGCAGGAGTTGATTGATCGTGAAAGGAAGGTATTCCTGATGGAAGAGACATTGAACACAACAAAGGAATTGCAAGACTTGACTAGGCAGACTTCTGAATTGGAACAGACTTATGCTACCCTTGGTGAGAACTTGCAGATGAGATGTGCATGTCCAAGTTGTCATCTAGACAATGTGGAGGCCCTGGGAGGACTTACTCGATCAAACGAAGCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

30.31

Weight (kDa)

4.62

Isoelectric Point (pI)

62.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 562
AciI CCGC 2 cut(s) 5, 140
AclWI GGATC 1 cut(s) 292
AcsI RAATTY 1 cut(s) 399
AflII CTTAAG 1 cut(s) 302
AgsI TTSAA 6 cut(s) 206, 233, 428, 536, 566, 631
AjnI CCWGG 2 cut(s) 245, 759
AluBI AGCT 9 cut(s) 112, 124, 145, 224, 299, 317, 355, 431, 527
AluI AGCT 9 cut(s) 112, 124, 145, 224, 299, 317, 355, 431, 527
Alw21I GWGCWC 2 cut(s) 147, 357
Alw26I GTCTC 3 cut(s) 69, 515, 617
AlwI GGATC 1 cut(s) 292
AoxI GGCC 3 cut(s) 88, 153, 756
ApeKI GCWGC 3 cut(s) 317, 320, 392
ApoI RAATTY 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 608
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 574, 757
AsuHPI GGTGA 3 cut(s) 43, 446, 713
AvaII GGWCC 1 cut(s) 574
AxyI CCTNAGG 1 cut(s) 92
BanII GRGCYC 2 cut(s) 147, 357
BauI CACGAG 1 cut(s) 324
Bbv12I GWGCWC 2 cut(s) 147, 357
BbvI GCAGC 3 cut(s) 304, 307, 379
BccI CCATC 2 cut(s) 434, 610
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 2 cut(s) 247, 761
BcoDI GTCTC 3 cut(s) 69, 515, 617
BfaI CTAG 2 cut(s) 660, 743
BfrI CTTAAG 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 562
BisI GCNGC 3 cut(s) 318, 321, 393
BlsI GCNGC 3 cut(s) 319, 322, 394
Bme1390I CCNGG 2 cut(s) 247, 761
Bme18I GGWCC 1 cut(s) 574
BmgT120I GGNCC 2 cut(s) 574, 757
BmrFI CCNGG 2 cut(s) 247, 761
BmsI GCATC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 344, 376
BpmI CTGGAG 1 cut(s) 260
BpuEI CTTGAG 2 cut(s) 146, 512
BsaJI CCNNGG 3 cut(s) 697, 759, 760
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bse21I CCTNAGG 1 cut(s) 92
BseBI CCWGG 2 cut(s) 247, 761
BseDI CCNNGG 3 cut(s) 697, 759, 760
BseMII CTCAG 3 cut(s) 80, 83, 510
BseRI GAGGAG 3 cut(s) 281, 422, 476
BseXI GCAGC 3 cut(s) 304, 307, 379
BsgI GTGCAG 1 cut(s) 306
BshFI GGCC 3 cut(s) 90, 155, 758
BsiHKAI GWGCWC 2 cut(s) 147, 357
BsmAI GTCTC 3 cut(s) 69, 515, 617
BsnI GGCC 3 cut(s) 90, 155, 758
Bsp1286I GDGCHC 2 cut(s) 147, 357
Bsp143I GATC 3 cut(s) 284, 592, 776
BspACI CCGC 2 cut(s) 5, 140
BspANI GGCC 3 cut(s) 90, 155, 758
BspCNI CTCAG 3 cut(s) 79, 84, 511
BspHI TCATGA 3 cut(s) 30, 403, 445
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 1 cut(s) 292
BspQI GCTCTTC 1 cut(s) 102
BspTI CTTAAG 1 cut(s) 302
BssECI CCNNGG 3 cut(s) 697, 759, 760
BssMI GATC 3 cut(s) 284, 592, 776
BssSI CACGAG 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 697
Bst2BI CACGAG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 247, 761
Bst6I CTCTTC 4 cut(s) 73, 102, 144, 615
BstAFI CTTAAG 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 4 cut(s) 66, 92, 363, 519
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 3 cut(s) 287, 595, 779
BstMAI GTCTC 3 cut(s) 69, 515, 617
BstMBI GATC 3 cut(s) 284, 592, 776
BstMWI GCNNNNNNNGC 1 cut(s) 577
BstNI CCWGG 2 cut(s) 247, 761
BstNSI RCATGY 1 cut(s) 729
BstSCI CCNGG 2 cut(s) 245, 759
BstV1I GCAGC 3 cut(s) 304, 307, 379
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
Bsu36I CCTNAGG 1 cut(s) 92
BsuRI GGCC 3 cut(s) 90, 155, 758
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 504
CciI TCATGA 3 cut(s) 30, 403, 445
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 574, 757
CseI GACGC 2 cut(s) 23, 268
CviAII CATG 4 cut(s) 31, 404, 446, 726
DdeI CTNAG 4 cut(s) 66, 92, 363, 519
DpnI GATC 3 cut(s) 286, 594, 778
DpnII GATC 3 cut(s) 284, 592, 776
Eam1104I CTCTTC 4 cut(s) 73, 102, 144, 615
EarI CTCTTC 4 cut(s) 73, 102, 144, 615
Ecl136II GAGCTC 2 cut(s) 145, 355
Eco130I CCWWGG 1 cut(s) 697
Eco24I GRGCYC 2 cut(s) 147, 357
Eco47I GGWCC 1 cut(s) 574
Eco53kI GAGCTC 2 cut(s) 145, 355
Eco81I CCTNAGG 1 cut(s) 92
EcoICRI GAGCTC 2 cut(s) 145, 355
EcoO109I RGGNCCY 1 cut(s) 757
EcoRII CCWGG 2 cut(s) 245, 759
EcoT14I CCWWGG 1 cut(s) 697
EcoT38I GRGCYC 2 cut(s) 147, 357
ErhI CCWWGG 1 cut(s) 697
FaeI CATG 4 cut(s) 34, 407, 449, 729
FatI CATG 4 cut(s) 30, 403, 445, 725
Fnu4HI GCNGC 3 cut(s) 318, 321, 393
FriOI GRGCYC 2 cut(s) 147, 357
Fsp4HI GCNGC 3 cut(s) 318, 321, 393
FspBI CTAG 2 cut(s) 660, 743
GlaI GCGC 1 cut(s) 161
GluI GCNGC 3 cut(s) 318, 321, 393
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 3 cut(s) 90, 155, 758
HgaI GACGC 2 cut(s) 23, 268
HhaI GCGC 1 cut(s) 162
Hin1II CATG 4 cut(s) 34, 407, 449, 729
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 6 cut(s) 40, 102, 170, 229, 242, 383
HphI GGTGA 3 cut(s) 43, 446, 713
Hpy188I TCNGA 7 cut(s) 58, 121, 134, 289, 520, 553, 673
Hpy188III TCNNGA 7 cut(s) 31, 44, 404, 446, 596, 613, 743
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 598
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 4 cut(s) 323, 649, 712, 725
HpyF10VI GCNNNNNNNGC 1 cut(s) 577
HpyF3I CTNAG 4 cut(s) 66, 92, 363, 519
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 4 cut(s) 34, 407, 449, 729
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 284, 592, 776
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 3 cut(s) 304, 307, 379
LweI GCATC 1 cut(s) 171
MaeI CTAG 2 cut(s) 660, 743
MaeII ACGT 1 cut(s) 116
MalI GATC 3 cut(s) 286, 594, 778
MboI GATC 3 cut(s) 284, 592, 776
MboII GAAGA 6 cut(s) 90, 119, 161, 548, 551, 632
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 2 cut(s) 147, 357
MluCI AATT 8 cut(s) 206, 290, 387, 399, 412, 423, 644, 674
MlyI GAGTC 3 cut(s) 179, 251, 392
MmeI TCCRAC 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 3 cut(s) 303, 482, 793
MspCI CTTAAG 1 cut(s) 302
MspR9I CCNGG 2 cut(s) 247, 761
MunI CAATTG 1 cut(s) 387
MvaI CCWGG 2 cut(s) 247, 761
MwoI GCNNNNNNNGC 1 cut(s) 577
NdeII GATC 3 cut(s) 284, 592, 776
NlaIII CATG 4 cut(s) 34, 407, 449, 729
NspI RCATGY 1 cut(s) 729
PagI TCATGA 3 cut(s) 30, 403, 445
PasI CCCWGGG 1 cut(s) 760
PciSI GCTCTTC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 608
PfeI GAWTC 3 cut(s) 40, 102, 229
PfoI TCCNGGA 1 cut(s) 245
PkrI GCNGC 3 cut(s) 319, 322, 394
PleI GAGTC 3 cut(s) 178, 250, 391
PpsI GAGTC 3 cut(s) 178, 250, 391
Psp124BI GAGCTC 2 cut(s) 147, 357
Psp6I CCWGG 2 cut(s) 245, 759
PspGI CCWGG 2 cut(s) 245, 759
PspPI GGNCC 2 cut(s) 574, 757
PsuI RGATCY 1 cut(s) 284
SacI GAGCTC 2 cut(s) 147, 357
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 303, 482, 793
SatI GCNGC 3 cut(s) 318, 321, 393
Sau3AI GATC 3 cut(s) 284, 592, 776
Sau96I GGNCC 2 cut(s) 574, 757
SchI GAGTC 3 cut(s) 179, 251, 392
ScrFI CCNGG 2 cut(s) 247, 761
SduI GDGCHC 2 cut(s) 147, 357
SfaNI GCATC 1 cut(s) 171
SinI GGWCC 1 cut(s) 574
SmlI CTYRAG 3 cut(s) 125, 302, 491
SmoI CTYRAG 3 cut(s) 125, 302, 491
Sse9I AATT 8 cut(s) 206, 290, 387, 399, 412, 423, 644, 674
SsiI CCGC 2 cut(s) 5, 140
SspI AATATT 1 cut(s) 562
SspMI CTAG 2 cut(s) 660, 743
SstI GAGCTC 2 cut(s) 147, 357
StyD4I CCNGG 2 cut(s) 245, 759
StyI CCWWGG 1 cut(s) 697
TaiI ACGT 1 cut(s) 119
TaqI TCGA 5 cut(s) 105, 147, 173, 190, 775
TasI AATT 8 cut(s) 206, 290, 387, 399, 412, 423, 644, 674
TfiI GAWTC 3 cut(s) 40, 102, 229
Tru1I TTAA 3 cut(s) 303, 482, 793
Tru9I TTAA 3 cut(s) 303, 482, 793
TseI GCWGC 3 cut(s) 317, 320, 392
TspDTI ATGAA 6 cut(s) 47, 230, 234, 325, 392, 462
Vha464I CTTAAG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 574
XapI RAATTY 1 cut(s) 399
XbaI TCTAGA 1 cut(s) 742
XceI RCATGY 1 cut(s) 729
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 2 cut(s) 660, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.