Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007717

Physical Location & Seq

Genomic Coordinates Reverse (-)

78669857 .. 78672268

Gene Structure 2412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G051000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCGGGAAGCGACCCCCGGAAGCACCTCATGAACTTGATTCACGACTTCGCCTCCGAGAAGTCTCAGGAGCGAAGAGTGGTCGGCCTGAGGAAGCGAATCGAAGAGCTGACGTCTGAGCTTGAGGTCAGAAATGCAGAGCTTGAAGAAGCCAAGCGCTACGAAGTTGAATTGGCTATGAATGAAGCTACGTTTCAAACGCTTGAGTCAAGGATTTCGCTGACGCAAGAGGAGGTTTCCACAGTTGGATCTAACTTGGAAGCTCTTAAGAACAAAGAAGCTGCTGCACGAGATGAGTTCATAAGCCAAATGTTTGAGCTAAACTCTAAGATAAGGAAGTTCCAAGAGTCAATTGCTGGGAAAATTCATGAGGAGAATTATATGGAAACTGAAGCTGGTGATGAAGGTCAGGAACTAGTAAGGGAGGAGGTTTCTGAGGTATCTTTAAGAGCACTTGAGGACATGCTTGCCTGTGTTGTATCTGAGACAGCTAAAGTAGAAGAAGAATACAAATCAGAACAGAATATTCAAAAGCAAGTCCAGCAGGAGTTGGTTGATTGTGAAAGGAAGGTATTCCTGATGGAGGAGACATTGAACATAACAAAGGAATTGCAACAGACTTCTGAATTGGAACAGACTTATGCTACCCTTTGTGAGAACTTGCAGATGAGATGTGCATGTCCAAGTTGTCATCTAGACAATGTGGAGGCCCTGGGGGGACTTACTCAATCAAATGAAGCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

28.38

Weight (kDa)

4.6

Isoelectric Point (pI)

63.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51430 AT3G28370 AT3G28370 AT3G28370 AT3G28370 AT3G28370
fragaria_vesca	FvH4_6g49740
malus_domestica	MD09G1042000.v1.1 MD17G1043300.v1.1
prunus_persica	Prupe.3G275800_v2.0.a1 Prupe.3G275800_v2.0.a1 Prupe.3G275800_v2.0.a1
pyrus_communis	pycom111g03290
rosa_chinensis	RchiOBHm_Chr2g0169771
rosa_laevigata	RLG00000021901
rosa_multiflora	Rmu_ssc0000389.1_g000028
rosa_roxburghii	Rroxscaffold_2G00081800 Rroxscaffold_5G00351560
rosa_rugosa	Rorug02G0543100
rosa_samantha	Rh2AG615100 Rh2BG627400 Rh2CG596800 Rh2DG638200
rosa_wichuraiana	Rw2G051000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	116
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	113
AfeI	AGCGCT	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	583
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	5 cut(s)	146, 170, 197, 530, 595
AhlI	ACTAGT	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	711
AluBI	AGCT	9 cut(s)	109, 121, 142, 188, 263, 281, 319, 395, 491
AluI	AGCT	9 cut(s)	109, 121, 142, 188, 263, 281, 319, 395, 491
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	3 cut(s)	69, 479, 581
AlwI	GGATC	1 cut(s)	256
Aor51HI	AGCGCT	1 cut(s)	158
AoxI	GGCC	2 cut(s)	85, 708
ApeKI	GCWGC	2 cut(s)	281, 284
ApoI	RAATTY	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	709
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	410
AxyI	CCTNAGG	1 cut(s)	89
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	2 cut(s)	268, 271
BccI	CCATC	1 cut(s)	574
BciT130I	CCWGG	1 cut(s)	713
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	3 cut(s)	69, 479, 581
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	2 cut(s)	416, 695
BfoI	RGCGCY	1 cut(s)	160
BfrI	CTTAAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	282, 285
BlsI	GCNGC	2 cut(s)	283, 286
Bme1390I	CCNGG	2 cut(s)	19, 713
BmgT120I	GGNCC	1 cut(s)	709
BmrFI	CCNGG	2 cut(s)	19, 713
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BpuEI	CTTGAG	3 cut(s)	143, 224, 476
BpuMI	CCSGG	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	17, 711, 712
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse21I	CCTNAGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	713
BseDI	CCNNGG	3 cut(s)	17, 711, 712
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMII	CTCAG	5 cut(s)	80, 80, 108, 426, 474
BseRI	GAGGAG	4 cut(s)	245, 386, 440, 599
BseXI	GCAGC	2 cut(s)	268, 271
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	2 cut(s)	87, 710
BsiHKAI	GWGCWC	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmAI	GTCTC	3 cut(s)	69, 479, 581
BsmFI	GGGAC	1 cut(s)	732
BsnI	GGCC	2 cut(s)	87, 710
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	1 cut(s)	248
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	87, 710
BspCNI	CTCAG	5 cut(s)	79, 81, 109, 427, 475
BspHI	TCATGA	2 cut(s)	30, 367
BspPI	GGATC	1 cut(s)	256
BspQI	GCTCTTC	1 cut(s)	99
BspTI	CTTAAG	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	17, 711, 712
BssMI	GATC	1 cut(s)	248
BssNI	GRCGYC	1 cut(s)	113
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	713
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	70, 99
BstACI	GRCGYC	1 cut(s)	113
BstAFI	CTTAAG	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	6 cut(s)	66, 89, 117, 327, 435, 483
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	1 cut(s)	251
BstMAI	GTCTC	3 cut(s)	69, 479, 581
BstMBI	GATC	1 cut(s)	248
BstMWI	GCNNNNNNNGC	1 cut(s)	541
BstNI	CCWGG	1 cut(s)	713
BstNSI	RCATGY	2 cut(s)	466, 681
BstSCI	CCNGG	2 cut(s)	17, 711
BstV1I	GCAGC	2 cut(s)	268, 271
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
Bsu36I	CCTNAGG	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	87, 710
Cac8I	GCNNGC	1 cut(s)	468
CciI	TCATGA	2 cut(s)	30, 367
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	709
CseI	GACGC	1 cut(s)	232
CviAII	CATG	4 cut(s)	31, 368, 463, 678
DdeI	CTNAG	6 cut(s)	66, 89, 117, 327, 435, 483
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
Eam1104I	CTCTTC	2 cut(s)	70, 99
EarI	CTCTTC	2 cut(s)	70, 99
Eco47III	AGCGCT	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	411
Eco81I	CCTNAGG	1 cut(s)	89
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	711
FaeI	CATG	4 cut(s)	34, 371, 466, 681
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	4 cut(s)	30, 367, 462, 677
Fnu4HI	GCNGC	2 cut(s)	282, 285
Fsp4HI	GCNGC	2 cut(s)	282, 285
FspBI	CTAG	2 cut(s)	416, 695
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	2 cut(s)	282, 285
GsaI	CCCAGC	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	87, 710
HapII	CCGG	1 cut(s)	19
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	4 cut(s)	34, 371, 466, 681
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HinfI	GANTC	4 cut(s)	40, 99, 206, 347
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	1 cut(s)	410
Hpy188I	TCNGA	7 cut(s)	58, 118, 131, 436, 484, 517, 625
Hpy188III	TCNNGA	7 cut(s)	31, 44, 68, 368, 410, 577, 695
HpyAV	CCTTC	2 cut(s)	398, 562
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	113, 191
HpyCH4V	TGCA	5 cut(s)	137, 287, 613, 664, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	541
HpyF3I	CTNAG	6 cut(s)	66, 89, 117, 327, 435, 483
HpySE526I	ACGT	2 cut(s)	113, 191
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	4 cut(s)	34, 371, 466, 681
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	248
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	2 cut(s)	268, 271
MaeI	CTAG	2 cut(s)	416, 695
MaeII	ACGT	2 cut(s)	113, 191
MalI	GATC	1 cut(s)	250
MboI	GATC	1 cut(s)	248
MboII	GAAGA	5 cut(s)	87, 116, 158, 512, 515
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	6 cut(s)	170, 351, 363, 376, 608, 626
MlyI	GAGTC	2 cut(s)	215, 356
MmeI	TCCRAC	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	572
MseI	TTAA	3 cut(s)	267, 446, 745
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	2 cut(s)	19, 713
MunI	CAATTG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	713
MwoI	GCNNNNNNNGC	1 cut(s)	541
NciI	CCSGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	248
NlaIII	CATG	4 cut(s)	34, 371, 466, 681
NspI	RCATGY	2 cut(s)	466, 681
PagI	TCATGA	2 cut(s)	30, 367
PasI	CCCWGGG	1 cut(s)	712
PciSI	GCTCTTC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	40, 99
PkrI	GCNGC	2 cut(s)	283, 286
PleI	GAGTC	2 cut(s)	214, 355
PpsI	GAGTC	2 cut(s)	214, 355
Psp6I	CCWGG	1 cut(s)	711
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	711
PspPI	GGNCC	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	267, 446, 745
SatI	GCNGC	2 cut(s)	282, 285
Sau3AI	GATC	1 cut(s)	248
Sau96I	GGNCC	1 cut(s)	709
SchI	GAGTC	2 cut(s)	215, 356
ScrFI	CCNGG	2 cut(s)	19, 713
SduI	GDGCHC	1 cut(s)	454
SmlI	CTYRAG	4 cut(s)	122, 203, 266, 455
SmoI	CTYRAG	4 cut(s)	122, 203, 266, 455
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	6 cut(s)	170, 351, 363, 376, 608, 626
SsiI	CCGC	1 cut(s)	5
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	2 cut(s)	416, 695
StyD4I	CCNGG	2 cut(s)	17, 711
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	2 cut(s)	116, 194
TaqI	TCGA	1 cut(s)	102
TasI	AATT	6 cut(s)	170, 351, 363, 376, 608, 626
TfiI	GAWTC	2 cut(s)	40, 99
Tru1I	TTAA	3 cut(s)	267, 446, 745
Tru9I	TTAA	3 cut(s)	267, 446, 745
TseI	GCWGC	2 cut(s)	281, 284
TspDTI	ATGAA	6 cut(s)	47, 194, 198, 289, 356, 417
Vha464I	CTTAAG	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	1 cut(s)	363
XbaI	TCTAGA	1 cut(s)	694
XceI	RCATGY	2 cut(s)	466, 681
XmnI	GAANNNNTTC	1 cut(s)	572
XspI	CTAG	2 cut(s)	416, 695
ZraI	GACGTC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.