Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007717

Physical Location & Seq

Genomic Coordinates Forward (+)

4795169 .. 4797670

Gene Structure 2502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAACTTGATTCACGACTTCGCCTCCGAGAAGTCTCAGGGAGAGCGAAGAGTGGTCGGCCTGAGGAAGCGAATCGAGGAGCTGACGTCTGAGCTTGAGGTCAGAAATGCAGAGCTTGAAGAAGCCAAGCGCACCAAGGAGTCCATTGTGCAAGAGGTTCGAGGCTACGAAGTTGAATTGGCTATGAATGAAGCTACTATTCAAACGCTTGAGTCAAGGATTTTGCTGACGCAAGAGGAGGTTTCCACAGTTGGATCTGATTTGGAAGCTCTTAAGAACAAAGAAGCTGCTGCACGAGATGAGTTCATAAGCCAAATGTTTGAGCTAAACTCTAAGATAAGGAAGTTCCAAGAGTCAATTACTGGGAAAATTCATGAGGAGAATTATATGGAAACTGAAGCTGGTGATGAAGGTCAGGAACTAGTAAGGGAGGAGGTTTCTGAGGTATCTTTAAGAGCACTTGAGGAAATGCTTGCCTGTGTTGTATCTGAGACAGCTAAAGTAGAAGAAGAATACAAATCAGAGCAGAATATTCAAAAGCAAGTCCAGCAGGAGTTGGTTGATTGTGAAAGGAAGGTATTCCTGATGGAGGAGACATTGAACGCAACAAAGGAATTGCAAGATTTGACAAGATATCCTTTTCAAGATACCAGACTTTATGACTATCACTTCCACTTTGTTGTGGCTTTAACTGGAAACAAGCAGACTTCTGAATTGGAACAGACTTATGCTACCATTTGTGAGAACTTTCAGATGAGATGTGCATGTCCAAGTTGTCATCTAGACAATGTGGAGGCCCTGGGGGCACTTACTCAATCAAATGAAGCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

31.91

Weight (kDa)

4.62

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51430 AT3G28370 AT3G28370 AT3G28370 AT3G28370 AT3G28370
fragaria_vesca	FvH4_6g49740
malus_domestica	MD09G1042000.v1.1 MD17G1043300.v1.1
prunus_persica	Prupe.3G275800_v2.0.a1 Prupe.3G275800_v2.0.a1 Prupe.3G275800_v2.0.a1
pyrus_communis	pycom111g03290
rosa_chinensis	RchiOBHm_Chr2g0169771
rosa_laevigata	RLG00000021901
rosa_multiflora	Rmu_ssc0000389.1_g000028
rosa_roxburghii	Rroxscaffold_2G00081800 Rroxscaffold_5G00351560
rosa_rugosa	Rorug02G0543100
rosa_samantha	Rh2AG615100 Rh2BG627400 Rh2CG596800 Rh2DG638200
rosa_wichuraiana	Rw2G051000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	417
AcyI	GRCGYC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	589
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	6 cut(s)	119, 176, 203, 536, 601, 644
AhlI	ACTAGT	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	798
AluBI	AGCT	9 cut(s)	82, 94, 115, 194, 269, 287, 325, 401, 497
AluI	AGCT	9 cut(s)	82, 94, 115, 194, 269, 287, 325, 401, 497
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	3 cut(s)	39, 485, 587
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	2 cut(s)	58, 795
ApeKI	GCWGC	2 cut(s)	287, 290
ApoI	RAATTY	1 cut(s)	369
Asp700I	GAANNNNTTC	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	796
AsuHPI	GGTGA	1 cut(s)	416
AxyI	CCTNAGG	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	808
BauI	CACGAG	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	2 cut(s)	274, 277
BccI	CCATC	1 cut(s)	580
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	800
BcoDI	GTCTC	3 cut(s)	39, 485, 587
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	2 cut(s)	422, 782
BfrI	CTTAAG	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	803
BisI	GCNGC	2 cut(s)	288, 291
BlsI	GCNGC	2 cut(s)	289, 292
Bme1390I	CCNGG	1 cut(s)	800
BmgT120I	GGNCC	1 cut(s)	796
BmrFI	CCNGG	1 cut(s)	800
BmrI	ACTGGG	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	372
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpuEI	CTTGAG	3 cut(s)	116, 230, 482
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	135, 798, 799
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse1I	ACTGG	2 cut(s)	367, 697
Bse21I	CCTNAGG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	800
BseDI	CCNNGG	3 cut(s)	135, 798, 799
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMII	CTCAG	5 cut(s)	50, 53, 81, 432, 480
BseNI	ACTGG	2 cut(s)	367, 697
BseRI	GAGGAG	5 cut(s)	92, 251, 392, 446, 605
BseSI	GKGCMC	1 cut(s)	808
BseXI	GCAGC	2 cut(s)	274, 277
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	60, 797
BsiHKAI	GWGCWC	1 cut(s)	460
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	3 cut(s)	39, 485, 587
BsnI	GGCC	2 cut(s)	60, 797
Bsp1286I	GDGCHC	2 cut(s)	460, 808
Bsp143I	GATC	1 cut(s)	254
BspANI	GGCC	2 cut(s)	60, 797
BspCNI	CTCAG	5 cut(s)	49, 54, 82, 433, 481
BspHI	TCATGA	1 cut(s)	373
BspPI	GGATC	1 cut(s)	262
BspTI	CTTAAG	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	367, 697
BssECI	CCNNGG	3 cut(s)	135, 798, 799
BssMI	GATC	1 cut(s)	254
BssNI	GRCGYC	1 cut(s)	86
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	800
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	86
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	6 cut(s)	36, 62, 90, 333, 441, 489
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	1 cut(s)	257
BstMAI	GTCTC	3 cut(s)	39, 485, 587
BstMBI	GATC	1 cut(s)	254
BstMWI	GCNNNNNNNGC	2 cut(s)	547, 803
BstNI	CCWGG	1 cut(s)	800
BstNSI	RCATGY	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	798
BstSLI	GKGCMC	1 cut(s)	808
BstV1I	GCAGC	2 cut(s)	274, 277
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
Bsu36I	CCTNAGG	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	60, 797
Cac8I	GCNNGC	1 cut(s)	474
CciI	TCATGA	1 cut(s)	373
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	796
CseI	GACGC	1 cut(s)	238
CviAII	CATG	2 cut(s)	374, 765
DdeI	CTNAG	6 cut(s)	36, 62, 90, 333, 441, 489
DpnI	GATC	1 cut(s)	256
DpnII	GATC	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	62
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	796
EcoRII	CCWGG	1 cut(s)	798
EcoRV	GATATC	1 cut(s)	635
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	377, 768
FaiI	YATR	9 cut(s)	185, 308, 375, 387, 389, 660, 729, 766, 829
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FatI	CATG	2 cut(s)	373, 764
Fnu4HI	GCNGC	2 cut(s)	288, 291
Fsp4HI	GCNGC	2 cut(s)	288, 291
FspBI	CTAG	2 cut(s)	422, 782
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	2 cut(s)	288, 291
HaeIII	GGCC	2 cut(s)	60, 797
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	377, 768
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HinfI	GANTC	5 cut(s)	10, 72, 140, 212, 353
HphI	GGTGA	1 cut(s)	416
Hpy188I	TCNGA	9 cut(s)	28, 91, 104, 259, 442, 490, 523, 712, 753
Hpy188III	TCNNGA	6 cut(s)	14, 374, 416, 583, 644, 782
HpyAV	CCTTC	2 cut(s)	404, 568
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	5 cut(s)	110, 151, 293, 619, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	547, 803
HpyF3I	CTNAG	6 cut(s)	36, 62, 90, 333, 441, 489
HpySE526I	ACGT	1 cut(s)	86
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	377, 768
HspAI	GCGC	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	254
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	2 cut(s)	274, 277
MaeI	CTAG	2 cut(s)	422, 782
MaeII	ACGT	1 cut(s)	86
MalI	GATC	1 cut(s)	256
MboI	GATC	1 cut(s)	254
MboII	GAAGA	4 cut(s)	60, 131, 518, 521
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	2 cut(s)	460, 808
MluCI	AATT	6 cut(s)	176, 357, 369, 382, 614, 713
MlyI	GAGTC	3 cut(s)	149, 221, 362
MmeI	TCCRAC	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	578
MseI	TTAA	4 cut(s)	273, 452, 689, 832
MspCI	CTTAAG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	800
MvaI	CCWGG	1 cut(s)	800
MwoI	GCNNNNNNNGC	2 cut(s)	547, 803
NdeII	GATC	1 cut(s)	254
NlaIII	CATG	2 cut(s)	377, 768
NspI	RCATGY	1 cut(s)	768
PagI	TCATGA	1 cut(s)	373
PasI	CCCWGGG	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	2 cut(s)	10, 72
PkrI	GCNGC	2 cut(s)	289, 292
PleI	GAGTC	3 cut(s)	148, 220, 361
PpsI	GAGTC	3 cut(s)	148, 220, 361
Psp6I	CCWGG	1 cut(s)	798
PspGI	CCWGG	1 cut(s)	798
PspPI	GGNCC	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	254
SaqAI	TTAA	4 cut(s)	273, 452, 689, 832
SatI	GCNGC	2 cut(s)	288, 291
Sau3AI	GATC	1 cut(s)	254
Sau96I	GGNCC	1 cut(s)	796
SchI	GAGTC	3 cut(s)	149, 221, 362
ScrFI	CCNGG	1 cut(s)	800
SduI	GDGCHC	2 cut(s)	460, 808
SmlI	CTYRAG	4 cut(s)	95, 209, 272, 461
SmoI	CTYRAG	4 cut(s)	95, 209, 272, 461
SpeI	ACTAGT	1 cut(s)	421
Sse9I	AATT	6 cut(s)	176, 357, 369, 382, 614, 713
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	2 cut(s)	422, 782
StyD4I	CCNGG	1 cut(s)	798
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	75, 160
TasI	AATT	6 cut(s)	176, 357, 369, 382, 614, 713
TfiI	GAWTC	2 cut(s)	10, 72
Tru1I	TTAA	4 cut(s)	273, 452, 689, 832
Tru9I	TTAA	4 cut(s)	273, 452, 689, 832
TseI	GCWGC	2 cut(s)	287, 290
TspDTI	ATGAA	6 cut(s)	17, 200, 204, 295, 362, 423
Vha464I	CTTAAG	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	587
XapI	RAATTY	1 cut(s)	369
XbaI	TCTAGA	1 cut(s)	781
XceI	RCATGY	1 cut(s)	768
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	2 cut(s)	422, 782
ZraI	GACGTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.